Gcaud2098.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2098.t1
Unique Name	Gcaud2098.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	266

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_112_length_49450_cov_4.312142	contig	NODE_112_length_49450_cov_4.312142:8193..8990 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	246437.XP_006170742.1
Preferred name	METTL6
PFAMs	Methyltransf_12,Methyltransf_23
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00003,RC00113,RC00392,RC01244
KEGG ko	ko:K00599
KEGG Reaction	R02671,R02912,R03955,R04939
GOs	GO:0001510,GO:0002946,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016427,GO:0016428,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Evalue	4.39e-63
EggNOG OGs	KOG2361@1\|root,KOG2361@2759\|Eukaryota,38CN0@33154\|Opisthokonta,3BCF5@33208\|Metazoa,3CSAG@33213\|Bilateria,4819Y@7711\|Chordata,48YE6@7742\|Vertebrata,3J3RE@40674\|Mammalia,35FKX@314146\|Euarchontoglires
Description	tRNA C5-cytosine methylation
COG category	S
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2098	Gcaud2098	Gracilaria caudata M_176_S67 male	gene	NODE_112_length_49450_cov_4.312142 8193..8990 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2098.t1.stop1	Gcaud2098.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_112_length_49450_cov_4.312142 8193..8195 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2098.t1.CDS1	Gcaud2098.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_112_length_49450_cov_4.312142 8193..8990 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2098.t1.exon1	Gcaud2098.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_112_length_49450_cov_4.312142 8193..8990 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2098.t1.start1	Gcaud2098.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_112_length_49450_cov_4.312142 8988..8990 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2098.t1	Gcaud2098.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_112_length_49450_cov_4.312142 8193..8990 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_112_length_49450_cov_4.312142:8193..8990-
coding sequence from alignment at NODE_112_length_49450_cov_4.312142:8193..8990-

mRNA sequence

>Gcaud2098.t1 ID=Gcaud2098.t1|Name=Gcaud2098.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=266bp
MDPDLYRSAQTQSGVPAFWANKYEKDALKNWDKFYKRNATNFFKDRHWTA
MESTDGFPCLAEPSEGIRIVVEAGCGVANCAFPLLDVNECLFIYAFDFAP
SAVSLIKEEDQYDENRMKAFSWDFCTHPFSSIDPHQRGLLSDGKADFCLL
VFVLSAVPPAKQAYGIRNLYALLKPGGRLLFRDYATGDLAQNRFASRNRI
DKNYFVRQDRTLSFFFDEETLRSRMTEVGFEEIYVRRVSRVIQNRKENLQ
MSRVFLQAEFVKPML*

spliced messenger RNA

>Gcaud2098.t1 ID=Gcaud2098.t1|Name=Gcaud2098.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=798bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:8193..8990- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCTGATCTTTACCGTTCGGCACAGACGCAAAGCGGCGTGCCCGC
CTTTTGGGCTAATAAATATGAAAAAGATGCTTTGAAGAACTGGGATAAGT
TTTACAAACGCAATGCGACAAACTTTTTCAAGGACCGGCACTGGACTGCC
ATGGAGTCCACAGATGGCTTTCCGTGTCTTGCTGAACCCTCGGAGGGTAT
TAGAATTGTTGTGGAAGCTGGATGTGGTGTAGCAAACTGCGCTTTTCCTC
TTTTGGACGTCAATGAGTGTCTATTTATATATGCTTTTGACTTTGCTCCA
TCTGCCGTAAGCCTGATTAAGGAGGAAGATCAATATGACGAGAACCGCAT
GAAAGCGTTTTCATGGGACTTCTGTACGCACCCCTTCAGCTCCATAGATC
CACACCAGCGGGGCCTTTTGTCCGATGGAAAGGCGGACTTCTGCTTACTT
GTTTTTGTATTGAGTGCAGTCCCTCCGGCGAAGCAGGCATATGGCATACG
CAACCTGTACGCTCTTCTCAAGCCTGGAGGAAGGCTTTTGTTTCGTGACT
ACGCAACTGGTGACTTAGCGCAGAATCGCTTTGCATCACGGAATAGGATT
GACAAGAACTATTTTGTTCGTCAGGATAGAACTCTTTCTTTCTTCTTTGA
CGAAGAAACCTTGCGTTCTCGCATGACAGAAGTTGGCTTCGAAGAGATTT
ACGTTCGAAGAGTCTCGCGAGTGATACAAAACCGCAAGGAAAACTTGCAA
ATGAGCAGAGTCTTCCTGCAAGCAGAATTCGTGAAACCCATGCTTTGA

protein sequence of Gcaud2098.t1

>Gcaud2098.t1 ID=Gcaud2098.t1|Name=Gcaud2098.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=266bp
MDPDLYRSAQTQSGVPAFWANKYEKDALKNWDKFYKRNATNFFKDRHWTA
MESTDGFPCLAEPSEGIRIVVEAGCGVANCAFPLLDVNECLFIYAFDFAP
SAVSLIKEEDQYDENRMKAFSWDFCTHPFSSIDPHQRGLLSDGKADFCLL
VFVLSAVPPAKQAYGIRNLYALLKPGGRLLFRDYATGDLAQNRFASRNRI
DKNYFVRQDRTLSFFFDEETLRSRMTEVGFEEIYVRRVSRVIQNRKENLQ
MSRVFLQAEFVKPML*

mRNA from alignment at NODE_112_length_49450_cov_4.312142:8193..8990-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2098.t1 ID=Gcaud2098.t1|Name=Gcaud2098.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=798bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:8193..8990- (Gracilaria caudata M_176_S67 male)
ATGGATCCTGATCTTTACCGTTCGGCACAGACGCAAAGCGGCGTGCCCGC
CTTTTGGGCTAATAAATATGAAAAAGATGCTTTGAAGAACTGGGATAAGT
TTTACAAACGCAATGCGACAAACTTTTTCAAGGACCGGCACTGGACTGCC
ATGGAGTCCACAGATGGCTTTCCGTGTCTTGCTGAACCCTCGGAGGGTAT
TAGAATTGTTGTGGAAGCTGGATGTGGTGTAGCAAACTGCGCTTTTCCTC
TTTTGGACGTCAATGAGTGTCTATTTATATATGCTTTTGACTTTGCTCCA
TCTGCCGTAAGCCTGATTAAGGAGGAAGATCAATATGACGAGAACCGCAT
GAAAGCGTTTTCATGGGACTTCTGTACGCACCCCTTCAGCTCCATAGATC
CACACCAGCGGGGCCTTTTGTCCGATGGAAAGGCGGACTTCTGCTTACTT
GTTTTTGTATTGAGTGCAGTCCCTCCGGCGAAGCAGGCATATGGCATACG
CAACCTGTACGCTCTTCTCAAGCCTGGAGGAAGGCTTTTGTTTCGTGACT
ACGCAACTGGTGACTTAGCGCAGAATCGCTTTGCATCACGGAATAGGATT
GACAAGAACTATTTTGTTCGTCAGGATAGAACTCTTTCTTTCTTCTTTGA
CGAAGAAACCTTGCGTTCTCGCATGACAGAAGTTGGCTTCGAAGAGATTT
ACGTTCGAAGAGTCTCGCGAGTGATACAAAACCGCAAGGAAAACTTGCAA
ATGAGCAGAGTCTTCCTGCAAGCAGAATTCGTGAAACCCATGCTTTGA

Coding sequence (CDS) from alignment at NODE_112_length_49450_cov_4.312142:8193..8990-

>Gcaud2098.t1 ID=Gcaud2098.t1|Name=Gcaud2098.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=798bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:8193..8990- (Gracilaria caudata M_176_S67 male)
ATGGATCCTGATCTTTACCGTTCGGCACAGACGCAAAGCGGCGTGCCCGC
CTTTTGGGCTAATAAATATGAAAAAGATGCTTTGAAGAACTGGGATAAGT
TTTACAAACGCAATGCGACAAACTTTTTCAAGGACCGGCACTGGACTGCC
ATGGAGTCCACAGATGGCTTTCCGTGTCTTGCTGAACCCTCGGAGGGTAT
TAGAATTGTTGTGGAAGCTGGATGTGGTGTAGCAAACTGCGCTTTTCCTC
TTTTGGACGTCAATGAGTGTCTATTTATATATGCTTTTGACTTTGCTCCA
TCTGCCGTAAGCCTGATTAAGGAGGAAGATCAATATGACGAGAACCGCAT
GAAAGCGTTTTCATGGGACTTCTGTACGCACCCCTTCAGCTCCATAGATC
CACACCAGCGGGGCCTTTTGTCCGATGGAAAGGCGGACTTCTGCTTACTT
GTTTTTGTATTGAGTGCAGTCCCTCCGGCGAAGCAGGCATATGGCATACG
CAACCTGTACGCTCTTCTCAAGCCTGGAGGAAGGCTTTTGTTTCGTGACT
ACGCAACTGGTGACTTAGCGCAGAATCGCTTTGCATCACGGAATAGGATT
GACAAGAACTATTTTGTTCGTCAGGATAGAACTCTTTCTTTCTTCTTTGA
CGAAGAAACCTTGCGTTCTCGCATGACAGAAGTTGGCTTCGAAGAGATTT
ACGTTCGAAGAGTCTCGCGAGTGATACAAAACCGCAAGGAAAACTTGCAA
ATGAGCAGAGTCTTCCTGCAAGCAGAATTCGTGAAACCCATGCTTTGA