Gcaud2092.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2092.t1
Unique Name	Gcaud2092.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	480

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_781_length_18128_cov_4.694018	contig	NODE_781_length_18128_cov_4.694018:4371..5810 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005648881.1
Preferred name	NELFB
PFAMs	COBRA1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15180
GOs	GO:0000122,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0017053,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032021,GO:0032774,GO:0032784,GO:0032785,GO:0032991,GO:0034243,GO:0034244,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
Evalue	8.39e-07
EggNOG OGs	2C1MK@1\|root,2QTMJ@2759\|Eukaryota
Description	negative regulation of transcription elongation from RNA polymerase II promoter
COG category	S
BRITE	ko00000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2092	Gcaud2092	Gracilaria caudata M_176_S67 male	gene	NODE_781_length_18128_cov_4.694018 4371..5810 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2092.t1.start1	Gcaud2092.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_781_length_18128_cov_4.694018 4371..4373 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2092.t1.CDS1	Gcaud2092.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_781_length_18128_cov_4.694018 4371..5810 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2092.t1.exon1	Gcaud2092.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_781_length_18128_cov_4.694018 4371..5810 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2092.t1.stop1	Gcaud2092.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_781_length_18128_cov_4.694018 5808..5810 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2092.t1	Gcaud2092.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_781_length_18128_cov_4.694018 4371..5810 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_781_length_18128_cov_4.694018:4371..5810+
coding sequence from alignment at NODE_781_length_18128_cov_4.694018:4371..5810+

mRNA sequence

>Gcaud2092.t1 ID=Gcaud2092.t1|Name=Gcaud2092.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp
MEQALDPKIFQIGYAGKDAVKECFENRDFEIERIAEFIMEFRNLRGVQVG
STPLTLLKKGGFPPSRALSEVLKIVIDRMKRDVSTLSHDKLDCLLEKSFT
YLTVPHLAEIPIATLERINVVDPNIWKQIVDNGLNDSPYTDLPLSIKKRI
WSFEPKALDHEIDVLIDGLPEKGNPENLDDLGSNRDRHRMRSTNAKLNEL
LRMLEGMGENEVMQVLEKMVERAAVEQVPPKLDAIANFYHDLVLRLPTAA
VSGPNLMTIRKMAKFLDTKAGHDITLDTHLLKEIREAMSTEHPTGAVALL
LGSTYSRDFLADQLVYGLISRRGPINDFADENILKSAATHLRADPHVEDL
TFLNICNMKTGPLLSGSGSITEAEIEEPFQLFFQLMMDEIHVEITHMHEH
FFSGNLGLPNALLVEAVQKGRLQRRVLTSYCFQQSAYGNFTGLSRYRLLL
EDVLRAADNTAEPREVTLAYQLILKIIGP*

spliced messenger RNA

>Gcaud2092.t1 ID=Gcaud2092.t1|Name=Gcaud2092.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:4371..5810+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAAGCATTGGACCCAAAAATATTTCAAATCGGATACGCGGGGAA
AGACGCAGTGAAGGAGTGTTTTGAAAACCGGGACTTTGAAATAGAAAGAA
TCGCAGAGTTCATCATGGAGTTTAGAAATCTTAGAGGCGTACAGGTTGGG
AGTACCCCCTTGACACTTCTGAAGAAGGGCGGATTCCCCCCCAGTCGTGC
GTTAAGCGAGGTGTTAAAGATTGTCATAGACAGGATGAAGCGAGATGTTT
CTACTCTCTCGCACGATAAGCTGGACTGTTTGTTGGAAAAGAGTTTCACC
TATCTCACTGTCCCACACCTTGCTGAGATTCCCATTGCAACTCTGGAGCG
TATAAATGTTGTCGACCCCAACATATGGAAGCAGATTGTTGACAATGGAC
TTAACGACTCTCCTTATACGGATCTTCCTCTTTCTATCAAGAAGCGAATA
TGGTCGTTCGAACCGAAAGCTCTAGACCACGAAATAGACGTTTTGATTGA
CGGTCTACCAGAAAAGGGGAATCCTGAAAACCTTGATGATCTAGGTTCCA
ATCGTGACCGACATAGGATGCGTTCAACTAACGCCAAGCTTAACGAACTA
TTGCGGATGTTAGAAGGAATGGGTGAAAATGAAGTGATGCAGGTCTTAGA
GAAAATGGTTGAGAGGGCTGCGGTGGAGCAAGTCCCCCCTAAACTTGATG
CAATTGCTAACTTCTACCACGACCTAGTTCTTCGTCTTCCGACTGCAGCC
GTATCAGGGCCAAATCTAATGACCATACGAAAAATGGCGAAGTTTCTCGA
CACTAAGGCAGGTCATGATATTACTCTGGACACACATTTGCTGAAAGAAA
TCCGCGAAGCCATGTCCACAGAGCATCCTACCGGAGCGGTTGCCTTATTG
CTTGGGTCGACCTACTCACGTGATTTCTTAGCCGACCAGTTGGTATACGG
ATTGATATCTAGAAGAGGTCCAATCAATGACTTTGCGGACGAAAACATAT
TGAAATCGGCTGCCACGCACTTGAGAGCAGATCCGCACGTAGAAGATCTA
ACGTTTCTGAACATCTGCAACATGAAAACCGGACCACTGCTATCAGGTTC
TGGTTCAATAACCGAGGCAGAAATTGAGGAACCTTTTCAACTGTTTTTCC
AGCTCATGATGGACGAAATCCATGTGGAAATCACTCACATGCATGAACAC
TTTTTCTCTGGTAATTTGGGGTTGCCGAACGCGCTTCTTGTTGAGGCGGT
GCAGAAAGGAAGGTTGCAAAGAAGAGTACTCACGTCTTACTGCTTTCAGC
AAAGTGCGTATGGGAATTTTACGGGGTTGTCGCGATACAGATTACTTCTG
GAAGACGTTCTACGCGCAGCTGATAACACTGCAGAGCCACGAGAAGTCAC
GTTAGCCTACCAACTGATCTTGAAGATTATTGGCCCGTGA

protein sequence of Gcaud2092.t1

>Gcaud2092.t1 ID=Gcaud2092.t1|Name=Gcaud2092.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=480bp
MEQALDPKIFQIGYAGKDAVKECFENRDFEIERIAEFIMEFRNLRGVQVG
STPLTLLKKGGFPPSRALSEVLKIVIDRMKRDVSTLSHDKLDCLLEKSFT
YLTVPHLAEIPIATLERINVVDPNIWKQIVDNGLNDSPYTDLPLSIKKRI
WSFEPKALDHEIDVLIDGLPEKGNPENLDDLGSNRDRHRMRSTNAKLNEL
LRMLEGMGENEVMQVLEKMVERAAVEQVPPKLDAIANFYHDLVLRLPTAA
VSGPNLMTIRKMAKFLDTKAGHDITLDTHLLKEIREAMSTEHPTGAVALL
LGSTYSRDFLADQLVYGLISRRGPINDFADENILKSAATHLRADPHVEDL
TFLNICNMKTGPLLSGSGSITEAEIEEPFQLFFQLMMDEIHVEITHMHEH
FFSGNLGLPNALLVEAVQKGRLQRRVLTSYCFQQSAYGNFTGLSRYRLLL
EDVLRAADNTAEPREVTLAYQLILKIIGP*

mRNA from alignment at NODE_781_length_18128_cov_4.694018:4371..5810+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2092.t1 ID=Gcaud2092.t1|Name=Gcaud2092.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:4371..5810+ (Gracilaria caudata M_176_S67 male)
ATGGAGCAAGCATTGGACCCAAAAATATTTCAAATCGGATACGCGGGGAA
AGACGCAGTGAAGGAGTGTTTTGAAAACCGGGACTTTGAAATAGAAAGAA
TCGCAGAGTTCATCATGGAGTTTAGAAATCTTAGAGGCGTACAGGTTGGG
AGTACCCCCTTGACACTTCTGAAGAAGGGCGGATTCCCCCCCAGTCGTGC
GTTAAGCGAGGTGTTAAAGATTGTCATAGACAGGATGAAGCGAGATGTTT
CTACTCTCTCGCACGATAAGCTGGACTGTTTGTTGGAAAAGAGTTTCACC
TATCTCACTGTCCCACACCTTGCTGAGATTCCCATTGCAACTCTGGAGCG
TATAAATGTTGTCGACCCCAACATATGGAAGCAGATTGTTGACAATGGAC
TTAACGACTCTCCTTATACGGATCTTCCTCTTTCTATCAAGAAGCGAATA
TGGTCGTTCGAACCGAAAGCTCTAGACCACGAAATAGACGTTTTGATTGA
CGGTCTACCAGAAAAGGGGAATCCTGAAAACCTTGATGATCTAGGTTCCA
ATCGTGACCGACATAGGATGCGTTCAACTAACGCCAAGCTTAACGAACTA
TTGCGGATGTTAGAAGGAATGGGTGAAAATGAAGTGATGCAGGTCTTAGA
GAAAATGGTTGAGAGGGCTGCGGTGGAGCAAGTCCCCCCTAAACTTGATG
CAATTGCTAACTTCTACCACGACCTAGTTCTTCGTCTTCCGACTGCAGCC
GTATCAGGGCCAAATCTAATGACCATACGAAAAATGGCGAAGTTTCTCGA
CACTAAGGCAGGTCATGATATTACTCTGGACACACATTTGCTGAAAGAAA
TCCGCGAAGCCATGTCCACAGAGCATCCTACCGGAGCGGTTGCCTTATTG
CTTGGGTCGACCTACTCACGTGATTTCTTAGCCGACCAGTTGGTATACGG
ATTGATATCTAGAAGAGGTCCAATCAATGACTTTGCGGACGAAAACATAT
TGAAATCGGCTGCCACGCACTTGAGAGCAGATCCGCACGTAGAAGATCTA
ACGTTTCTGAACATCTGCAACATGAAAACCGGACCACTGCTATCAGGTTC
TGGTTCAATAACCGAGGCAGAAATTGAGGAACCTTTTCAACTGTTTTTCC
AGCTCATGATGGACGAAATCCATGTGGAAATCACTCACATGCATGAACAC
TTTTTCTCTGGTAATTTGGGGTTGCCGAACGCGCTTCTTGTTGAGGCGGT
GCAGAAAGGAAGGTTGCAAAGAAGAGTACTCACGTCTTACTGCTTTCAGC
AAAGTGCGTATGGGAATTTTACGGGGTTGTCGCGATACAGATTACTTCTG
GAAGACGTTCTACGCGCAGCTGATAACACTGCAGAGCCACGAGAAGTCAC
GTTAGCCTACCAACTGATCTTGAAGATTATTGGCCCGTGA

Coding sequence (CDS) from alignment at NODE_781_length_18128_cov_4.694018:4371..5810+

>Gcaud2092.t1 ID=Gcaud2092.t1|Name=Gcaud2092.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1440bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:4371..5810+ (Gracilaria caudata M_176_S67 male)
ATGGAGCAAGCATTGGACCCAAAAATATTTCAAATCGGATACGCGGGGAA
AGACGCAGTGAAGGAGTGTTTTGAAAACCGGGACTTTGAAATAGAAAGAA
TCGCAGAGTTCATCATGGAGTTTAGAAATCTTAGAGGCGTACAGGTTGGG
AGTACCCCCTTGACACTTCTGAAGAAGGGCGGATTCCCCCCCAGTCGTGC
GTTAAGCGAGGTGTTAAAGATTGTCATAGACAGGATGAAGCGAGATGTTT
CTACTCTCTCGCACGATAAGCTGGACTGTTTGTTGGAAAAGAGTTTCACC
TATCTCACTGTCCCACACCTTGCTGAGATTCCCATTGCAACTCTGGAGCG
TATAAATGTTGTCGACCCCAACATATGGAAGCAGATTGTTGACAATGGAC
TTAACGACTCTCCTTATACGGATCTTCCTCTTTCTATCAAGAAGCGAATA
TGGTCGTTCGAACCGAAAGCTCTAGACCACGAAATAGACGTTTTGATTGA
CGGTCTACCAGAAAAGGGGAATCCTGAAAACCTTGATGATCTAGGTTCCA
ATCGTGACCGACATAGGATGCGTTCAACTAACGCCAAGCTTAACGAACTA
TTGCGGATGTTAGAAGGAATGGGTGAAAATGAAGTGATGCAGGTCTTAGA
GAAAATGGTTGAGAGGGCTGCGGTGGAGCAAGTCCCCCCTAAACTTGATG
CAATTGCTAACTTCTACCACGACCTAGTTCTTCGTCTTCCGACTGCAGCC
GTATCAGGGCCAAATCTAATGACCATACGAAAAATGGCGAAGTTTCTCGA
CACTAAGGCAGGTCATGATATTACTCTGGACACACATTTGCTGAAAGAAA
TCCGCGAAGCCATGTCCACAGAGCATCCTACCGGAGCGGTTGCCTTATTG
CTTGGGTCGACCTACTCACGTGATTTCTTAGCCGACCAGTTGGTATACGG
ATTGATATCTAGAAGAGGTCCAATCAATGACTTTGCGGACGAAAACATAT
TGAAATCGGCTGCCACGCACTTGAGAGCAGATCCGCACGTAGAAGATCTA
ACGTTTCTGAACATCTGCAACATGAAAACCGGACCACTGCTATCAGGTTC
TGGTTCAATAACCGAGGCAGAAATTGAGGAACCTTTTCAACTGTTTTTCC
AGCTCATGATGGACGAAATCCATGTGGAAATCACTCACATGCATGAACAC
TTTTTCTCTGGTAATTTGGGGTTGCCGAACGCGCTTCTTGTTGAGGCGGT
GCAGAAAGGAAGGTTGCAAAGAAGAGTACTCACGTCTTACTGCTTTCAGC
AAAGTGCGTATGGGAATTTTACGGGGTTGTCGCGATACAGATTACTTCTG
GAAGACGTTCTACGCGCAGCTGATAACACTGCAGAGCCACGAGAAGTCAC
GTTAGCCTACCAACTGATCTTGAAGATTATTGGCCCGTGA