Gcaud2085.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2085.t1
Unique NameGcaud2085.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length97
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2442_length_5645_cov_4.400612contigNODE_2442_length_5645_cov_4.400612:563..1112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2085Gcaud2085Gracilaria caudata M_176_S67 malegeneNODE_2442_length_5645_cov_4.400612 563..1112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2085.t1Gcaud2085.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2442_length_5645_cov_4.400612 563..1112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2085.t1.CDS1Gcaud2085.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2442_length_5645_cov_4.400612 563..609 +
Gcaud2085.t1.CDS2Gcaud2085.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2442_length_5645_cov_4.400612 781..837 +
Gcaud2085.t1.CDS3Gcaud2085.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2442_length_5645_cov_4.400612 927..1112 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2085.t1.exon1Gcaud2085.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2442_length_5645_cov_4.400612 563..609 +
Gcaud2085.t1.exon2Gcaud2085.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2442_length_5645_cov_4.400612 781..837 +
Gcaud2085.t1.exon3Gcaud2085.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2442_length_5645_cov_4.400612 927..1112 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2085.t1.intron1Gcaud2085.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2442_length_5645_cov_4.400612 610..780 +
Gcaud2085.t1.intron2Gcaud2085.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2442_length_5645_cov_4.400612 838..926 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2085.t1.stop1Gcaud2085.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2442_length_5645_cov_4.400612 1110..1112 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2085.t1 ID=Gcaud2085.t1|Name=Gcaud2085.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=97bp
XLLSFTRTVLSGSVVFFAAALLPMLPIAAQRFCHSWFDWALTKAMFRGAA
SRRCVEVLLIQTPTCVVHCFQRDIIIAQNNRLCYSKSFCSKDIDGV*
back to top

spliced messenger RNA

>Gcaud2085.t1 ID=Gcaud2085.t1|Name=Gcaud2085.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=290bp|location=Sequence derived from alignment at NODE_2442_length_5645_cov_4.400612:563..1112+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
AGCTGCTTTCGTTCACTCGGACTGTGCTCTCCGGGAGTGTCGTGTTTTTT
GCCGCCGCGCTCCTGCCGATGCTGCCTATTGCCGCGCAGCGCTTCTGTCA
CTCATGGTTCGATTGGGCTCTTACAAAGGCTATGTTCCGCGGCGCTGCAT
CTCGCCGTTGTGTTGAGGTCTTGCTTATACAAACACCAACATGTGTGGTG
CACTGCTTTCAACGTGACATCATAATCGCGCAGAACAACAGGCTTTGCTA
CTCAAAGAGCTTTTGCTCAAAGGACATTGACGGTGTATAA
back to top

protein sequence of Gcaud2085.t1

>Gcaud2085.t1 ID=Gcaud2085.t1|Name=Gcaud2085.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=97bp
XLLSFTRTVLSGSVVFFAAALLPMLPIAAQRFCHSWFDWALTKAMFRGAA
SRRCVEVLLIQTPTCVVHCFQRDIIIAQNNRLCYSKSFCSKDIDGV*
back to top

mRNA from alignment at NODE_2442_length_5645_cov_4.400612:563..1112+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2085.t1 ID=Gcaud2085.t1|Name=Gcaud2085.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=550bp|location=Sequence derived from alignment at NODE_2442_length_5645_cov_4.400612:563..1112+ (Gracilaria caudata M_176_S67 male)
AGCTGCTTTCGTTCACTCGGACTGTGCTCTCCGGGAGTGTCGTGTTTGTA
CGCTCGCGTCATGGTCTTGGCTAGCGCCGCAATTGAGCGTTCGTACAACG
CCTCTTGCTTGCCCCTTGCTGTTGCTCTGACTCTCCGCCTCTTGCTTTTG
CTTTTACGCCGCCCTCCTGGCAAAACAACCATCCGCCGCGTGGTGTTCTT
CTCATTTTTACCATATAGTTTGCCGCCGCGCTCCTGCCGATGCTGCCTAT
TGCCGCGCAGCGCTTCTGTCACTCAGTATATTGCCCTGCCGCGCTCCTGT
TAACGCCATCGCGCTGATGCTTTTGTCAAAATCTGACGCTCTCTGTTTCT
GACGCTCATATTAGTGGTTCGATTGGGCTCTTACAAAGGCTATGTTCCGC
GGCGCTGCATCTCGCCGTTGTGTTGAGGTCTTGCTTATACAAACACCAAC
ATGTGTGGTGCACTGCTTTCAACGTGACATCATAATCGCGCAGAACAACA
GGCTTTGCTACTCAAAGAGCTTTTGCTCAAAGGACATTGACGGTGTATAA
back to top

Coding sequence (CDS) from alignment at NODE_2442_length_5645_cov_4.400612:563..1112+

>Gcaud2085.t1 ID=Gcaud2085.t1|Name=Gcaud2085.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=290bp|location=Sequence derived from alignment at NODE_2442_length_5645_cov_4.400612:563..1112+ (Gracilaria caudata M_176_S67 male)
AGCTGCTTTCGTTCACTCGGACTGTGCTCTCCGGGAGTGTCGTGTTTTTT
GCCGCCGCGCTCCTGCCGATGCTGCCTATTGCCGCGCAGCGCTTCTGTCA
CTCATGGTTCGATTGGGCTCTTACAAAGGCTATGTTCCGCGGCGCTGCAT
CTCGCCGTTGTGTTGAGGTCTTGCTTATACAAACACCAACATGTGTGGTG
CACTGCTTTCAACGTGACATCATAATCGCGCAGAACAACAGGCTTTGCTA
CTCAAAGAGCTTTTGCTCAAAGGACATTGACGGTGTATAA
back to top