Gcaud2084.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2084.t1
Unique Name	Gcaud2084.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	451

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_906_length_16253_cov_4.271192	contig	NODE_906_length_16253_cov_4.271192:14542..15894 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1279017.AQYJ01000029_gene3508
Max annot lvl	1224\|Proteobacteria
Evalue	1.01e-27
EggNOG OGs	2F92Y@1\|root,341EJ@2\|Bacteria,1NYJZ@1224\|Proteobacteria

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2084	Gcaud2084	Gracilaria caudata M_176_S67 male	gene	NODE_906_length_16253_cov_4.271192 14542..15894 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2084.t1.stop1	Gcaud2084.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_906_length_16253_cov_4.271192 14542..14544 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2084.t1.CDS1	Gcaud2084.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_906_length_16253_cov_4.271192 14542..15894 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2084.t1.exon1	Gcaud2084.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_906_length_16253_cov_4.271192 14542..15894 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2084.t1.start1	Gcaud2084.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_906_length_16253_cov_4.271192 15892..15894 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2084.t1	Gcaud2084.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_906_length_16253_cov_4.271192 14542..15894 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_906_length_16253_cov_4.271192:14542..15894-
coding sequence from alignment at NODE_906_length_16253_cov_4.271192:14542..15894-

mRNA sequence

>Gcaud2084.t1 ID=Gcaud2084.t1|Name=Gcaud2084.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=451bp
MEPVSREIFVNTEILGYARDENSPKAIDSTKTGCVQLFSLLTECFYRSSS
LNVSEDVVDSSVAHDGNANVGAVPKPAIEDNESYVSPTACQVACKVDEPD
DIDGTEVSSLETLYPTPRSPDEMPTTITLDRVRACQNGRWFWNSVVTRPE
YLVFGVEKMSRKHQKKLYISQVNVPPKGSTKNIVLAVAAQQNVWQKGGSS
CGLTGQCAGYKLGFKKETGSLQNKIDPSGVVSDIMRTGYLSLADTFVGLV
FDSRFHYLYRKETNNRHENGFYHFLLQRLGSEAGTIYLAGHSRGGCLVMR
LASRLSCQFPNARIIVHNFDGVCIKSSPFQSGEFGLTKAPTRVNPLNEDW
FVYTSNITERFHSTKNLSILSVLSGQHPQLRIPTFGLSRIVRSFGHSALA
TGSQVVENLKDESGRVWYEEVMTPFEHNAVHNTNHLRAVIHFQAAMESFA
*

spliced messenger RNA

>Gcaud2084.t1 ID=Gcaud2084.t1|Name=Gcaud2084.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at NODE_906_length_16253_cov_4.271192:14542..15894- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCCGTTTCTCGTGAAATTTTCGTGAACACGGAGATCCTGGGTTA
TGCCCGAGATGAGAATTCGCCGAAAGCCATTGACAGCACAAAAACCGGTT
GTGTACAACTTTTTTCTCTTCTAACAGAGTGTTTTTACCGAAGCTCTTCA
CTTAACGTCTCGGAAGATGTCGTGGACAGTTCCGTCGCACATGATGGAAA
CGCCAACGTTGGTGCAGTCCCCAAGCCTGCAATTGAAGACAATGAGTCCT
ACGTGTCCCCAACTGCGTGTCAAGTGGCGTGCAAAGTTGATGAGCCCGAC
GACATCGACGGTACTGAAGTGAGCTCTCTCGAAACGCTGTACCCCACACC
CCGCTCACCAGATGAGATGCCCACTACCATAACCTTAGATCGCGTTCGAG
CATGTCAAAATGGAAGATGGTTTTGGAACTCTGTCGTGACAAGACCTGAG
TATCTTGTGTTCGGCGTGGAGAAGATGAGCAGGAAGCATCAGAAGAAGTT
GTACATTTCACAAGTGAATGTGCCACCGAAAGGATCTACAAAAAATATAG
TTCTCGCCGTTGCCGCACAGCAAAATGTATGGCAGAAAGGTGGTTCTAGT
TGCGGGTTAACGGGGCAGTGTGCCGGATACAAGTTAGGATTCAAGAAAGA
GACGGGCTCGTTACAAAACAAAATCGATCCAAGTGGTGTTGTTTCTGATA
TTATGAGAACTGGATACTTGTCACTGGCCGATACGTTCGTTGGACTCGTG
TTTGATTCAAGATTCCATTATCTGTATAGAAAGGAGACGAATAATCGACA
TGAAAATGGTTTTTATCACTTCCTCTTGCAACGACTGGGAAGTGAAGCGG
GCACTATATATCTCGCCGGGCATAGTCGAGGCGGGTGTTTGGTTATGCGA
CTGGCATCGCGATTAAGTTGTCAGTTTCCGAACGCGAGGATCATTGTTCA
TAACTTTGATGGTGTATGCATTAAGTCAAGCCCTTTCCAATCAGGTGAGT
TTGGCTTAACCAAAGCGCCGACCCGGGTGAATCCTTTAAACGAAGATTGG
TTCGTATATACAAGCAACATCACGGAACGCTTTCACTCAACAAAAAACCT
GTCCATTTTAAGCGTGCTATCTGGACAGCATCCCCAGCTTCGTATTCCAA
CTTTTGGCCTAAGCAGGATAGTACGTAGCTTTGGACACAGTGCCCTCGCG
ACCGGCTCTCAAGTTGTGGAGAATTTGAAAGATGAGAGTGGACGTGTTTG
GTATGAAGAAGTAATGACCCCCTTCGAGCACAATGCTGTTCACAATACCA
ACCACCTTCGCGCAGTAATCCATTTCCAGGCCGCGATGGAATCCTTTGCA
TGA

protein sequence of Gcaud2084.t1

>Gcaud2084.t1 ID=Gcaud2084.t1|Name=Gcaud2084.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=451bp
MEPVSREIFVNTEILGYARDENSPKAIDSTKTGCVQLFSLLTECFYRSSS
LNVSEDVVDSSVAHDGNANVGAVPKPAIEDNESYVSPTACQVACKVDEPD
DIDGTEVSSLETLYPTPRSPDEMPTTITLDRVRACQNGRWFWNSVVTRPE
YLVFGVEKMSRKHQKKLYISQVNVPPKGSTKNIVLAVAAQQNVWQKGGSS
CGLTGQCAGYKLGFKKETGSLQNKIDPSGVVSDIMRTGYLSLADTFVGLV
FDSRFHYLYRKETNNRHENGFYHFLLQRLGSEAGTIYLAGHSRGGCLVMR
LASRLSCQFPNARIIVHNFDGVCIKSSPFQSGEFGLTKAPTRVNPLNEDW
FVYTSNITERFHSTKNLSILSVLSGQHPQLRIPTFGLSRIVRSFGHSALA
TGSQVVENLKDESGRVWYEEVMTPFEHNAVHNTNHLRAVIHFQAAMESFA
*

mRNA from alignment at NODE_906_length_16253_cov_4.271192:14542..15894-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2084.t1 ID=Gcaud2084.t1|Name=Gcaud2084.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at NODE_906_length_16253_cov_4.271192:14542..15894- (Gracilaria caudata M_176_S67 male)
ATGGAGCCCGTTTCTCGTGAAATTTTCGTGAACACGGAGATCCTGGGTTA
TGCCCGAGATGAGAATTCGCCGAAAGCCATTGACAGCACAAAAACCGGTT
GTGTACAACTTTTTTCTCTTCTAACAGAGTGTTTTTACCGAAGCTCTTCA
CTTAACGTCTCGGAAGATGTCGTGGACAGTTCCGTCGCACATGATGGAAA
CGCCAACGTTGGTGCAGTCCCCAAGCCTGCAATTGAAGACAATGAGTCCT
ACGTGTCCCCAACTGCGTGTCAAGTGGCGTGCAAAGTTGATGAGCCCGAC
GACATCGACGGTACTGAAGTGAGCTCTCTCGAAACGCTGTACCCCACACC
CCGCTCACCAGATGAGATGCCCACTACCATAACCTTAGATCGCGTTCGAG
CATGTCAAAATGGAAGATGGTTTTGGAACTCTGTCGTGACAAGACCTGAG
TATCTTGTGTTCGGCGTGGAGAAGATGAGCAGGAAGCATCAGAAGAAGTT
GTACATTTCACAAGTGAATGTGCCACCGAAAGGATCTACAAAAAATATAG
TTCTCGCCGTTGCCGCACAGCAAAATGTATGGCAGAAAGGTGGTTCTAGT
TGCGGGTTAACGGGGCAGTGTGCCGGATACAAGTTAGGATTCAAGAAAGA
GACGGGCTCGTTACAAAACAAAATCGATCCAAGTGGTGTTGTTTCTGATA
TTATGAGAACTGGATACTTGTCACTGGCCGATACGTTCGTTGGACTCGTG
TTTGATTCAAGATTCCATTATCTGTATAGAAAGGAGACGAATAATCGACA
TGAAAATGGTTTTTATCACTTCCTCTTGCAACGACTGGGAAGTGAAGCGG
GCACTATATATCTCGCCGGGCATAGTCGAGGCGGGTGTTTGGTTATGCGA
CTGGCATCGCGATTAAGTTGTCAGTTTCCGAACGCGAGGATCATTGTTCA
TAACTTTGATGGTGTATGCATTAAGTCAAGCCCTTTCCAATCAGGTGAGT
TTGGCTTAACCAAAGCGCCGACCCGGGTGAATCCTTTAAACGAAGATTGG
TTCGTATATACAAGCAACATCACGGAACGCTTTCACTCAACAAAAAACCT
GTCCATTTTAAGCGTGCTATCTGGACAGCATCCCCAGCTTCGTATTCCAA
CTTTTGGCCTAAGCAGGATAGTACGTAGCTTTGGACACAGTGCCCTCGCG
ACCGGCTCTCAAGTTGTGGAGAATTTGAAAGATGAGAGTGGACGTGTTTG
GTATGAAGAAGTAATGACCCCCTTCGAGCACAATGCTGTTCACAATACCA
ACCACCTTCGCGCAGTAATCCATTTCCAGGCCGCGATGGAATCCTTTGCA
TGA

Coding sequence (CDS) from alignment at NODE_906_length_16253_cov_4.271192:14542..15894-

>Gcaud2084.t1 ID=Gcaud2084.t1|Name=Gcaud2084.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1353bp|location=Sequence derived from alignment at NODE_906_length_16253_cov_4.271192:14542..15894- (Gracilaria caudata M_176_S67 male)
ATGGAGCCCGTTTCTCGTGAAATTTTCGTGAACACGGAGATCCTGGGTTA
TGCCCGAGATGAGAATTCGCCGAAAGCCATTGACAGCACAAAAACCGGTT
GTGTACAACTTTTTTCTCTTCTAACAGAGTGTTTTTACCGAAGCTCTTCA
CTTAACGTCTCGGAAGATGTCGTGGACAGTTCCGTCGCACATGATGGAAA
CGCCAACGTTGGTGCAGTCCCCAAGCCTGCAATTGAAGACAATGAGTCCT
ACGTGTCCCCAACTGCGTGTCAAGTGGCGTGCAAAGTTGATGAGCCCGAC
GACATCGACGGTACTGAAGTGAGCTCTCTCGAAACGCTGTACCCCACACC
CCGCTCACCAGATGAGATGCCCACTACCATAACCTTAGATCGCGTTCGAG
CATGTCAAAATGGAAGATGGTTTTGGAACTCTGTCGTGACAAGACCTGAG
TATCTTGTGTTCGGCGTGGAGAAGATGAGCAGGAAGCATCAGAAGAAGTT
GTACATTTCACAAGTGAATGTGCCACCGAAAGGATCTACAAAAAATATAG
TTCTCGCCGTTGCCGCACAGCAAAATGTATGGCAGAAAGGTGGTTCTAGT
TGCGGGTTAACGGGGCAGTGTGCCGGATACAAGTTAGGATTCAAGAAAGA
GACGGGCTCGTTACAAAACAAAATCGATCCAAGTGGTGTTGTTTCTGATA
TTATGAGAACTGGATACTTGTCACTGGCCGATACGTTCGTTGGACTCGTG
TTTGATTCAAGATTCCATTATCTGTATAGAAAGGAGACGAATAATCGACA
TGAAAATGGTTTTTATCACTTCCTCTTGCAACGACTGGGAAGTGAAGCGG
GCACTATATATCTCGCCGGGCATAGTCGAGGCGGGTGTTTGGTTATGCGA
CTGGCATCGCGATTAAGTTGTCAGTTTCCGAACGCGAGGATCATTGTTCA
TAACTTTGATGGTGTATGCATTAAGTCAAGCCCTTTCCAATCAGGTGAGT
TTGGCTTAACCAAAGCGCCGACCCGGGTGAATCCTTTAAACGAAGATTGG
TTCGTATATACAAGCAACATCACGGAACGCTTTCACTCAACAAAAAACCT
GTCCATTTTAAGCGTGCTATCTGGACAGCATCCCCAGCTTCGTATTCCAA
CTTTTGGCCTAAGCAGGATAGTACGTAGCTTTGGACACAGTGCCCTCGCG
ACCGGCTCTCAAGTTGTGGAGAATTTGAAAGATGAGAGTGGACGTGTTTG
GTATGAAGAAGTAATGACCCCCTTCGAGCACAATGCTGTTCACAATACCA
ACCACCTTCGCGCAGTAATCCATTTCCAGGCCGCGATGGAATCCTTTGCA
TGA