Gcaud2082.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2082.t1
Unique Name	Gcaud2082.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	494

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_906_length_16253_cov_4.271192	contig	NODE_906_length_16253_cov_4.271192:9053..10534 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	443598.AUFA01000009_gene5718
PFAMs	Cupin_4
Max annot lvl	28211\|Alphaproteobacteria
Evalue	5.17e-05
EggNOG OGs	COG2850@1\|root,COG2850@2\|Bacteria,1Q98G@1224\|Proteobacteria,2U2EG@28211\|Alphaproteobacteria
Description	Cupin superfamily protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2082	Gcaud2082	Gracilaria caudata M_176_S67 male	gene	NODE_906_length_16253_cov_4.271192 9053..10534 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2082.t1.stop1	Gcaud2082.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_906_length_16253_cov_4.271192 9053..9055 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2082.t1.CDS1	Gcaud2082.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_906_length_16253_cov_4.271192 9053..10534 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2082.t1.exon1	Gcaud2082.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_906_length_16253_cov_4.271192 9053..10534 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2082.t1.start1	Gcaud2082.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_906_length_16253_cov_4.271192 10532..10534 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2082.t1	Gcaud2082.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_906_length_16253_cov_4.271192 9053..10534 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_906_length_16253_cov_4.271192:9053..10534-
coding sequence from alignment at NODE_906_length_16253_cov_4.271192:9053..10534-

mRNA sequence

>Gcaud2082.t1 ID=Gcaud2082.t1|Name=Gcaud2082.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=494bp
MLTLITLVLAPVLCLATIDKHPSSKCKVKLPSPTITSRPPHLPAMQMLLN
DEDTYETFFSHNFERHALHVDDSYRSNRAVWMRMHRRFIPNHDIDNLLNM
SSRTFSLTIPTDLELTRYNSSSLVHEHLPPGRAPDLLTIQDFFRDGFELV
LHRMQMRSATIARFADSLSAFWHVSVEPSLHFCPPTSSTKHVQHPRAATL
RNGELFIVVLDGELVASVHEAAHEFPLPYETGHNSHNILSSIQNPSPKTI
SLDEGDVLYVPRGSAVYFVARGSPALYLSFHIRTDEIPATMVLRSMLSVA
QKRSEGPLGEFAATHLHWSDVVDCAIRVAHNVVPPLRRFFPLSGAIVDAL
EDAGKPVGQDVAVDVLQKFVVSAVNTFFDPFVTAITEGDVNVEDSLLRWA
KQISRERHDSSSYRQAKEMFRLCLDWLGRQSEAPSDGISQLALDWFTAME
AKRKPELEERYYAFQAQRIEEDKVEDDLICSEEEDFCSLASTV*

spliced messenger RNA

>Gcaud2082.t1 ID=Gcaud2082.t1|Name=Gcaud2082.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at NODE_906_length_16253_cov_4.271192:9053..10534- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTACCCTCATCACTCTTGTGCTCGCACCAGTGCTGTGCCTCGCAAC
CATCGATAAGCACCCATCGTCCAAATGTAAGGTGAAGCTGCCTTCGCCCA
CAATCACTTCGAGACCGCCCCATCTGCCGGCCATGCAAATGCTCCTTAAC
GATGAAGACACCTACGAGACTTTCTTTTCTCATAACTTTGAGCGTCATGC
ACTGCATGTGGATGACTCATATCGGTCCAACAGAGCTGTTTGGATGCGCA
TGCACCGTCGCTTTATCCCCAACCATGATATAGATAACCTCCTTAACATG
TCCTCAAGAACCTTTTCACTTACTATTCCCACCGATCTGGAATTAACTCG
TTACAATTCGTCAAGCTTGGTCCATGAACATCTTCCACCGGGACGTGCTC
CAGACTTGCTAACTATACAAGACTTCTTTCGAGATGGCTTCGAGCTTGTC
CTCCACCGCATGCAGATGCGCTCTGCGACTATAGCACGATTTGCTGATTC
TTTGTCCGCCTTTTGGCACGTCTCCGTTGAACCTTCTCTGCATTTTTGTC
CACCAACCTCGTCGACAAAACATGTACAACATCCTCGCGCAGCCACGTTA
CGCAACGGTGAACTGTTCATTGTTGTCTTGGACGGTGAACTGGTCGCTAG
TGTTCATGAAGCAGCCCATGAATTTCCACTGCCATACGAAACTGGACACA
ATTCTCACAACATTCTCTCATCGATTCAAAACCCCTCACCAAAAACTATC
TCACTCGATGAGGGCGATGTGTTGTATGTACCACGTGGTTCTGCCGTATA
CTTCGTAGCGCGCGGTTCTCCGGCCCTCTACCTTAGTTTTCATATTCGCA
CTGACGAAATACCGGCCACGATGGTATTGCGATCTATGTTGTCCGTAGCG
CAAAAACGCTCAGAAGGGCCTTTAGGTGAGTTTGCTGCAACTCACTTGCA
CTGGTCTGATGTGGTGGACTGCGCTATACGTGTGGCACACAATGTCGTTC
CCCCTTTGCGACGATTCTTTCCTCTTTCGGGTGCAATCGTCGACGCGCTT
GAAGATGCTGGAAAACCCGTGGGACAAGATGTAGCTGTGGATGTGCTACA
GAAATTTGTTGTTTCTGCCGTGAATACATTTTTTGACCCCTTCGTCACGG
CTATAACGGAAGGCGACGTTAACGTCGAAGATTCTTTGCTCAGATGGGCA
AAGCAAATATCCCGTGAAAGACATGATTCATCATCATATCGTCAAGCAAA
GGAGATGTTTAGATTGTGTTTAGATTGGCTCGGACGACAGAGTGAGGCTC
CAAGTGACGGTATTTCACAGCTAGCCCTCGATTGGTTTACGGCAATGGAA
GCTAAGAGAAAACCAGAATTAGAGGAGCGTTATTATGCCTTTCAAGCTCA
AAGGATTGAGGAAGACAAAGTTGAAGATGATTTGATATGCTCCGAAGAAG
AGGATTTTTGCTCTCTCGCTTCCACTGTGTGA

protein sequence of Gcaud2082.t1

>Gcaud2082.t1 ID=Gcaud2082.t1|Name=Gcaud2082.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=494bp
MLTLITLVLAPVLCLATIDKHPSSKCKVKLPSPTITSRPPHLPAMQMLLN
DEDTYETFFSHNFERHALHVDDSYRSNRAVWMRMHRRFIPNHDIDNLLNM
SSRTFSLTIPTDLELTRYNSSSLVHEHLPPGRAPDLLTIQDFFRDGFELV
LHRMQMRSATIARFADSLSAFWHVSVEPSLHFCPPTSSTKHVQHPRAATL
RNGELFIVVLDGELVASVHEAAHEFPLPYETGHNSHNILSSIQNPSPKTI
SLDEGDVLYVPRGSAVYFVARGSPALYLSFHIRTDEIPATMVLRSMLSVA
QKRSEGPLGEFAATHLHWSDVVDCAIRVAHNVVPPLRRFFPLSGAIVDAL
EDAGKPVGQDVAVDVLQKFVVSAVNTFFDPFVTAITEGDVNVEDSLLRWA
KQISRERHDSSSYRQAKEMFRLCLDWLGRQSEAPSDGISQLALDWFTAME
AKRKPELEERYYAFQAQRIEEDKVEDDLICSEEEDFCSLASTV*

mRNA from alignment at NODE_906_length_16253_cov_4.271192:9053..10534-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2082.t1 ID=Gcaud2082.t1|Name=Gcaud2082.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at NODE_906_length_16253_cov_4.271192:9053..10534- (Gracilaria caudata M_176_S67 male)
ATGCTTACCCTCATCACTCTTGTGCTCGCACCAGTGCTGTGCCTCGCAAC
CATCGATAAGCACCCATCGTCCAAATGTAAGGTGAAGCTGCCTTCGCCCA
CAATCACTTCGAGACCGCCCCATCTGCCGGCCATGCAAATGCTCCTTAAC
GATGAAGACACCTACGAGACTTTCTTTTCTCATAACTTTGAGCGTCATGC
ACTGCATGTGGATGACTCATATCGGTCCAACAGAGCTGTTTGGATGCGCA
TGCACCGTCGCTTTATCCCCAACCATGATATAGATAACCTCCTTAACATG
TCCTCAAGAACCTTTTCACTTACTATTCCCACCGATCTGGAATTAACTCG
TTACAATTCGTCAAGCTTGGTCCATGAACATCTTCCACCGGGACGTGCTC
CAGACTTGCTAACTATACAAGACTTCTTTCGAGATGGCTTCGAGCTTGTC
CTCCACCGCATGCAGATGCGCTCTGCGACTATAGCACGATTTGCTGATTC
TTTGTCCGCCTTTTGGCACGTCTCCGTTGAACCTTCTCTGCATTTTTGTC
CACCAACCTCGTCGACAAAACATGTACAACATCCTCGCGCAGCCACGTTA
CGCAACGGTGAACTGTTCATTGTTGTCTTGGACGGTGAACTGGTCGCTAG
TGTTCATGAAGCAGCCCATGAATTTCCACTGCCATACGAAACTGGACACA
ATTCTCACAACATTCTCTCATCGATTCAAAACCCCTCACCAAAAACTATC
TCACTCGATGAGGGCGATGTGTTGTATGTACCACGTGGTTCTGCCGTATA
CTTCGTAGCGCGCGGTTCTCCGGCCCTCTACCTTAGTTTTCATATTCGCA
CTGACGAAATACCGGCCACGATGGTATTGCGATCTATGTTGTCCGTAGCG
CAAAAACGCTCAGAAGGGCCTTTAGGTGAGTTTGCTGCAACTCACTTGCA
CTGGTCTGATGTGGTGGACTGCGCTATACGTGTGGCACACAATGTCGTTC
CCCCTTTGCGACGATTCTTTCCTCTTTCGGGTGCAATCGTCGACGCGCTT
GAAGATGCTGGAAAACCCGTGGGACAAGATGTAGCTGTGGATGTGCTACA
GAAATTTGTTGTTTCTGCCGTGAATACATTTTTTGACCCCTTCGTCACGG
CTATAACGGAAGGCGACGTTAACGTCGAAGATTCTTTGCTCAGATGGGCA
AAGCAAATATCCCGTGAAAGACATGATTCATCATCATATCGTCAAGCAAA
GGAGATGTTTAGATTGTGTTTAGATTGGCTCGGACGACAGAGTGAGGCTC
CAAGTGACGGTATTTCACAGCTAGCCCTCGATTGGTTTACGGCAATGGAA
GCTAAGAGAAAACCAGAATTAGAGGAGCGTTATTATGCCTTTCAAGCTCA
AAGGATTGAGGAAGACAAAGTTGAAGATGATTTGATATGCTCCGAAGAAG
AGGATTTTTGCTCTCTCGCTTCCACTGTGTGA

Coding sequence (CDS) from alignment at NODE_906_length_16253_cov_4.271192:9053..10534-

>Gcaud2082.t1 ID=Gcaud2082.t1|Name=Gcaud2082.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1482bp|location=Sequence derived from alignment at NODE_906_length_16253_cov_4.271192:9053..10534- (Gracilaria caudata M_176_S67 male)
ATGCTTACCCTCATCACTCTTGTGCTCGCACCAGTGCTGTGCCTCGCAAC
CATCGATAAGCACCCATCGTCCAAATGTAAGGTGAAGCTGCCTTCGCCCA
CAATCACTTCGAGACCGCCCCATCTGCCGGCCATGCAAATGCTCCTTAAC
GATGAAGACACCTACGAGACTTTCTTTTCTCATAACTTTGAGCGTCATGC
ACTGCATGTGGATGACTCATATCGGTCCAACAGAGCTGTTTGGATGCGCA
TGCACCGTCGCTTTATCCCCAACCATGATATAGATAACCTCCTTAACATG
TCCTCAAGAACCTTTTCACTTACTATTCCCACCGATCTGGAATTAACTCG
TTACAATTCGTCAAGCTTGGTCCATGAACATCTTCCACCGGGACGTGCTC
CAGACTTGCTAACTATACAAGACTTCTTTCGAGATGGCTTCGAGCTTGTC
CTCCACCGCATGCAGATGCGCTCTGCGACTATAGCACGATTTGCTGATTC
TTTGTCCGCCTTTTGGCACGTCTCCGTTGAACCTTCTCTGCATTTTTGTC
CACCAACCTCGTCGACAAAACATGTACAACATCCTCGCGCAGCCACGTTA
CGCAACGGTGAACTGTTCATTGTTGTCTTGGACGGTGAACTGGTCGCTAG
TGTTCATGAAGCAGCCCATGAATTTCCACTGCCATACGAAACTGGACACA
ATTCTCACAACATTCTCTCATCGATTCAAAACCCCTCACCAAAAACTATC
TCACTCGATGAGGGCGATGTGTTGTATGTACCACGTGGTTCTGCCGTATA
CTTCGTAGCGCGCGGTTCTCCGGCCCTCTACCTTAGTTTTCATATTCGCA
CTGACGAAATACCGGCCACGATGGTATTGCGATCTATGTTGTCCGTAGCG
CAAAAACGCTCAGAAGGGCCTTTAGGTGAGTTTGCTGCAACTCACTTGCA
CTGGTCTGATGTGGTGGACTGCGCTATACGTGTGGCACACAATGTCGTTC
CCCCTTTGCGACGATTCTTTCCTCTTTCGGGTGCAATCGTCGACGCGCTT
GAAGATGCTGGAAAACCCGTGGGACAAGATGTAGCTGTGGATGTGCTACA
GAAATTTGTTGTTTCTGCCGTGAATACATTTTTTGACCCCTTCGTCACGG
CTATAACGGAAGGCGACGTTAACGTCGAAGATTCTTTGCTCAGATGGGCA
AAGCAAATATCCCGTGAAAGACATGATTCATCATCATATCGTCAAGCAAA
GGAGATGTTTAGATTGTGTTTAGATTGGCTCGGACGACAGAGTGAGGCTC
CAAGTGACGGTATTTCACAGCTAGCCCTCGATTGGTTTACGGCAATGGAA
GCTAAGAGAAAACCAGAATTAGAGGAGCGTTATTATGCCTTTCAAGCTCA
AAGGATTGAGGAAGACAAAGTTGAAGATGATTTGATATGCTCCGAAGAAG
AGGATTTTTGCTCTCTCGCTTCCACTGTGTGA