Gcaud2078.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2078.t1
Unique Name	Gcaud2078.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	298

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_503_length_23508_cov_5.792160	contig	NODE_503_length_23508_cov_5.792160:18913..19806 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709078.1
Preferred name	NUP35
PFAMs	Nup35_RRM
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14313
KEGG TC	1.I.1
KEGG Pathway	ko03013,map03013
KEGG Module	M00427
GOs	GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005198,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005652,GO:0005654,GO:0005886,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006607,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006999,GO:0007088,GO:0007096,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009790,GO:0009792,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010564,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0031090,GO:0031323,GO:0031326,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034097,GO:0034399,GO:0034504,GO:0034613,GO:0042221,GO:0042802,GO:0042803,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0044615,GO:0045184,GO:0046907,GO:0046983,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071345,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0080090,GO:0097159,GO:1901363,GO:1901987,GO:1901990,GO:1903506,GO:1990823,GO:1990830,GO:2000112,GO:2001141
Evalue	3.72e-21
EggNOG OGs	KOG4285@1\|root,KOG4285@2759\|Eukaryota
Description	nuclear pore organization
COG category	K
BRITE	ko00000,ko00001,ko00002,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2078	Gcaud2078	Gracilaria caudata M_176_S67 male	gene	NODE_503_length_23508_cov_5.792160 18913..19806 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2078.t1.start1	Gcaud2078.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_503_length_23508_cov_5.792160 18913..18915 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2078.t1.CDS1	Gcaud2078.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_503_length_23508_cov_5.792160 18913..19806 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2078.t1.exon1	Gcaud2078.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_503_length_23508_cov_5.792160 18913..19806 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2078.t1.stop1	Gcaud2078.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_503_length_23508_cov_5.792160 19804..19806 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2078.t1	Gcaud2078.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_503_length_23508_cov_5.792160 18913..19806 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_503_length_23508_cov_5.792160:18913..19806+
coding sequence from alignment at NODE_503_length_23508_cov_5.792160:18913..19806+

mRNA sequence

>Gcaud2078.t1 ID=Gcaud2078.t1|Name=Gcaud2078.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=298bp
MFSSPTSKREDPPVRDRLPNYLLSANLTPNPEDQPSASFYTPSKPTAQRR
LSSRTETPPIFAPRTPLTFNDRLRTDKPLEEQQRATRAFTPSSKPRTPHV
PPNKSLLDTGPPSVRVLRSPSASPGTSLTPSSLSARTPTLGPQDRWITVF
GFAPAMEAQALREFRRHGEIVRTIPGKGNWVHILYRAPLQAQVALQRPWR
VLAGTETMVGAVPCTEPNVAKLADEQIEKGMLIASPGAAHVSPFSNTLPL
PSASPINPLKTPSTMLRRDNHASTTPTIIRTPQRQSGIFDFLSGLYG*

spliced messenger RNA

>Gcaud2078.t1 ID=Gcaud2078.t1|Name=Gcaud2078.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=894bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:18913..19806+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCCTCTCCCACCTCCAAGCGAGAAGACCCTCCCGTccgcgaccg
tcttcccaactaccttctctccgccaacctaacaccaaaccccgaagacc
aaccatccgcctccttctacacaccatccaaaccgaccgcccaacgtcgt
ctctcatcgcgcacagaaacgcctccaatcttcgcgcctcgcaccccgtt
aactttcaacgatcgtctacgaacagacaaacccctggaagaacaacagc
gcgcaactcgcgccttcactccatcttcaaagccaagaacgccacacgtt
ccacccaacaaatcgttgctggatactggtcctcctagtgtccgtgtttt
gcgctctccttctgcttctccaggcacttctcttacgcccagttcactgt
ctgcgcgcacgcccacgcttggaccacaagatcgatggatcactgtcttt
ggctttgcgcccgccatggaggcgcaggcgctccgtgaattccgtcgtca
cggagaaatagttcgtacaatcccagggaaaggaaattgggtccacatat
tatatcgagctccattacaagcgcaggtggctcttcaacgtccgtggaga
gtcttggcaggcactgagactatggttggagcagttccatgcacggaacc
taacgttgccaaacttgccgatgagcagattgaaaagggaatgctcattg
cttctccgggcgctgcgcatgtgagtccgttttcgaatacacttcctttg
ccttctgcgtcgcctattaatccacttaagactccttccactatgctccg
gagagataatcacgcgtctactactcctactattatacgcaccccgcaga
gacagtcaggcatcttcgactttctttctggtctatacggatag

protein sequence of Gcaud2078.t1

>Gcaud2078.t1 ID=Gcaud2078.t1|Name=Gcaud2078.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=298bp
MFSSPTSKREDPPVRDRLPNYLLSANLTPNPEDQPSASFYTPSKPTAQRR
LSSRTETPPIFAPRTPLTFNDRLRTDKPLEEQQRATRAFTPSSKPRTPHV
PPNKSLLDTGPPSVRVLRSPSASPGTSLTPSSLSARTPTLGPQDRWITVF
GFAPAMEAQALREFRRHGEIVRTIPGKGNWVHILYRAPLQAQVALQRPWR
VLAGTETMVGAVPCTEPNVAKLADEQIEKGMLIASPGAAHVSPFSNTLPL
PSASPINPLKTPSTMLRRDNHASTTPTIIRTPQRQSGIFDFLSGLYG*

mRNA from alignment at NODE_503_length_23508_cov_5.792160:18913..19806+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2078.t1 ID=Gcaud2078.t1|Name=Gcaud2078.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=894bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:18913..19806+ (Gracilaria caudata M_176_S67 male)
ATGTTCTCCTCTCCCACCTCCAAGCGAGAAGACCCTCCCGTccgcgaccg
tcttcccaactaccttctctccgccaacctaacaccaaaccccgaagacc
aaccatccgcctccttctacacaccatccaaaccgaccgcccaacgtcgt
ctctcatcgcgcacagaaacgcctccaatcttcgcgcctcgcaccccgtt
aactttcaacgatcgtctacgaacagacaaacccctggaagaacaacagc
gcgcaactcgcgccttcactccatcttcaaagccaagaacgccacacgtt
ccacccaacaaatcgttgctggatactggtcctcctagtgtccgtgtttt
gcgctctccttctgcttctccaggcacttctcttacgcccagttcactgt
ctgcgcgcacgcccacgcttggaccacaagatcgatggatcactgtcttt
ggctttgcgcccgccatggaggcgcaggcgctccgtgaattccgtcgtca
cggagaaatagttcgtacaatcccagggaaaggaaattgggtccacatat
tatatcgagctccattacaagcgcaggtggctcttcaacgtccgtggaga
gtcttggcaggcactgagactatggttggagcagttccatgcacggaacc
taacgttgccaaacttgccgatgagcagattgaaaagggaatgctcattg
cttctccgggcgctgcgcatgtgagtccgttttcgaatacacttcctttg
ccttctgcgtcgcctattaatccacttaagactccttccactatgctccg
gagagataatcacgcgtctactactcctactattatacgcaccccgcaga
gacagtcaggcatcttcgactttctttctggtctatacggatag

Coding sequence (CDS) from alignment at NODE_503_length_23508_cov_5.792160:18913..19806+

>Gcaud2078.t1 ID=Gcaud2078.t1|Name=Gcaud2078.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=894bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:18913..19806+ (Gracilaria caudata M_176_S67 male)
ATGTTCTCCTCTCCCACCTCCAAGCGAGAAGACCCTCCCGTccgcgaccg
tcttcccaactaccttctctccgccaacctaacaccaaaccccgaagacc
aaccatccgcctccttctacacaccatccaaaccgaccgcccaacgtcgt
ctctcatcgcgcacagaaacgcctccaatcttcgcgcctcgcaccccgtt
aactttcaacgatcgtctacgaacagacaaacccctggaagaacaacagc
gcgcaactcgcgccttcactccatcttcaaagccaagaacgccacacgtt
ccacccaacaaatcgttgctggatactggtcctcctagtgtccgtgtttt
gcgctctccttctgcttctccaggcacttctcttacgcccagttcactgt
ctgcgcgcacgcccacgcttggaccacaagatcgatggatcactgtcttt
ggctttgcgcccgccatggaggcgcaggcgctccgtgaattccgtcgtca
cggagaaatagttcgtacaatcccagggaaaggaaattgggtccacatat
tatatcgagctccattacaagcgcaggtggctcttcaacgtccgtggaga
gtcttggcaggcactgagactatggttggagcagttccatgcacggaacc
taacgttgccaaacttgccgatgagcagattgaaaagggaatgctcattg
cttctccgggcgctgcgcatgtgagtccgttttcgaatacacttcctttg
ccttctgcgtcgcctattaatccacttaagactccttccactatgctccg
gagagataatcacgcgtctactactcctactattatacgcaccccgcaga
gacagtcaggcatcttcgactttctttctggtctatacggatag