Gcaud2075.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2075.t1
Unique NameGcaud2075.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_503_length_23508_cov_5.792160contigNODE_503_length_23508_cov_5.792160:5269..5744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2075Gcaud2075Gracilaria caudata M_176_S67 malegeneNODE_503_length_23508_cov_5.792160 5269..5744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2075.t1Gcaud2075.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_503_length_23508_cov_5.792160 5269..5744 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2075.t1.start1Gcaud2075.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_503_length_23508_cov_5.792160 5269..5271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2075.t1.CDS1Gcaud2075.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_503_length_23508_cov_5.792160 5269..5493 +
Gcaud2075.t1.CDS2Gcaud2075.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_503_length_23508_cov_5.792160 5595..5744 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2075.t1.exon1Gcaud2075.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_503_length_23508_cov_5.792160 5269..5493 +
Gcaud2075.t1.exon2Gcaud2075.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_503_length_23508_cov_5.792160 5595..5744 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2075.t1.intron1Gcaud2075.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_503_length_23508_cov_5.792160 5494..5594 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2075.t1.stop1Gcaud2075.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_503_length_23508_cov_5.792160 5742..5744 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2075.t1 ID=Gcaud2075.t1|Name=Gcaud2075.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=125bp
MENMGQNLSLDLLGLYSCPQPGVDELLRWEVRGFYDEKFDDPWNFNLNEN
MVSLITATAISFSIVLFVDILFRVLKDQDILLGTIRRPWDSEKVSNTVTV
DDWKLGFDGEFGCTDRVLVHIPRN*
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spliced messenger RNA

>Gcaud2075.t1 ID=Gcaud2075.t1|Name=Gcaud2075.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=375bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:5269..5744+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAACATGGGACAAAATCTGTCGCTGGACTTGCTTGGCCTTTATTC
TTGTCCCCAGCCTGGTGTGGATGAACTGCTTCGCTGGGAAGTGCGCGGTT
TCTACGATGAAAAATTTGATGATCCTTGGAACTTCAACCTTAACGAGAAC
ATGGTATCACTCATCACAGCGACCGCCATTTCTTTTTCCATCGTTTTGTT
CGTTGACATCCTGTTCCGAGTTCTTAAGGATCAAGACATCTTGCTCGGAA
CTATCAGGAGACCGTGGGACAGTGAAAAGGTCTCGAATACTGTCACGGTG
GACGATTGGAAACTTGGTTTTGATGGGGAGTTTGGCTGTACTGATCGAGT
TCTTGTTCATATTCCTCGCAACTAA
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protein sequence of Gcaud2075.t1

>Gcaud2075.t1 ID=Gcaud2075.t1|Name=Gcaud2075.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=125bp
MENMGQNLSLDLLGLYSCPQPGVDELLRWEVRGFYDEKFDDPWNFNLNEN
MVSLITATAISFSIVLFVDILFRVLKDQDILLGTIRRPWDSEKVSNTVTV
DDWKLGFDGEFGCTDRVLVHIPRN*
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mRNA from alignment at NODE_503_length_23508_cov_5.792160:5269..5744+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2075.t1 ID=Gcaud2075.t1|Name=Gcaud2075.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=476bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:5269..5744+ (Gracilaria caudata M_176_S67 male)
ATGGAGAACATGGGACAAAATCTGTCGCTGGACTTGCTTGGCCTTTATTC
TTGTCCCCAGCCTGGTGTGGATGAACTGCTTCGCTGGGAAGTGCGCGGTT
TCTACGATGAAAAATTTGATGATCCTTGGAACTTCAACCTTAACGAGAAC
ATGGTATCACTCATCACAGCGACCGCCATTTCTTTTTCCATCGTTTTGTT
CGTTGACATCCTGTTCCGAGTTCTTGTACGTGCCAGAAACGGTCAAGTGA
GTCCTCAAGTGGTGCAGCGACGCCTGGTGCTAGAAAACTTCTCCAACCCA
ATAAATCTGCTTTCAACTGTTTTCAGAAGGATCAAGACATCTTGCTCGGA
ACTATCAGGAGACCGTGGGACAGTGAAAAGGTCTCGAATACTGTCACGGT
GGACGATTGGAAACTTGGTTTTGATGGGGAGTTTGGCTGTACTGATCGAG
TTCTTGTTCATATTCCTCGCAACTAA
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Coding sequence (CDS) from alignment at NODE_503_length_23508_cov_5.792160:5269..5744+

>Gcaud2075.t1 ID=Gcaud2075.t1|Name=Gcaud2075.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=375bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:5269..5744+ (Gracilaria caudata M_176_S67 male)
ATGGAGAACATGGGACAAAATCTGTCGCTGGACTTGCTTGGCCTTTATTC
TTGTCCCCAGCCTGGTGTGGATGAACTGCTTCGCTGGGAAGTGCGCGGTT
TCTACGATGAAAAATTTGATGATCCTTGGAACTTCAACCTTAACGAGAAC
ATGGTATCACTCATCACAGCGACCGCCATTTCTTTTTCCATCGTTTTGTT
CGTTGACATCCTGTTCCGAGTTCTTAAGGATCAAGACATCTTGCTCGGAA
CTATCAGGAGACCGTGGGACAGTGAAAAGGTCTCGAATACTGTCACGGTG
GACGATTGGAAACTTGGTTTTGATGGGGAGTTTGGCTGTACTGATCGAGT
TCTTGTTCATATTCCTCGCAACTAA
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