Gcaud2073.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2073.t1
Unique Name	Gcaud2073.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	361

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_917_length_16159_cov_4.533047	contig	NODE_917_length_16159_cov_4.533047:13251..14453 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704310.1
PFAMs	Asp
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01379,ko:K04521,ko:K06002,ko:K07747
KEGG Pathway	ko04071,ko04140,ko04142,ko04210,ko04915,ko04974,ko05010,ko05152,map04071,map04140,map04142,map04210,map04915,map04974,map05010,map05152
Evalue	2.03e-58
EggNOG OGs	KOG1339@1\|root,KOG1339@2759\|Eukaryota
EC	3.4.23.1,3.4.23.45,3.4.23.46,3.4.23.5
Description	aspartic-type endopeptidase activity
COG category	M
BRITE	ko00000,ko00001,ko01000,ko01002,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2073	Gcaud2073	Gracilaria caudata M_176_S67 male	gene	NODE_917_length_16159_cov_4.533047 13251..14453 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2073.t1	Gcaud2073.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_917_length_16159_cov_4.533047 13251..14453 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2073.t1.stop1	Gcaud2073.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_917_length_16159_cov_4.533047 13251..13253 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2073.t1.CDS1	Gcaud2073.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_917_length_16159_cov_4.533047 13251..14058 -
Gcaud2073.t1.CDS2	Gcaud2073.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_917_length_16159_cov_4.533047 14179..14453 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2073.t1.exon1	Gcaud2073.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_917_length_16159_cov_4.533047 13251..14058 -
Gcaud2073.t1.exon2	Gcaud2073.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_917_length_16159_cov_4.533047 14179..14453 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2073.t1.intron1	Gcaud2073.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_917_length_16159_cov_4.533047 14059..14178 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2073.t1.start1	Gcaud2073.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_917_length_16159_cov_4.533047 14451..14453 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_917_length_16159_cov_4.533047:13251..14453-
coding sequence from alignment at NODE_917_length_16159_cov_4.533047:13251..14453-

mRNA sequence

>Gcaud2073.t1 ID=Gcaud2073.t1|Name=Gcaud2073.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=361bp
MIDTLTWGNVSAPVVFGGILDDSADFQRDMVDGILGMAYKALACNPTCVE
PPLQQMVKAGVISDSFSICVNARGGRLILGDYDPSLGKTPPTGTTLVVVS
ESTFILMLDHMMRHHCDVKGLCEEPSWFMPSACVPLPDEELEKMPSFVFH
LGSNGEFDMELRPADYMLPINKPGQAGYRCVGFMAMKEMQDGTDVIFGNT
IMQRYVTHYDRQNKRLGFAESVSDCGAVTNCSSYTQCRECAEAAPHCAFD
YRSHTCQQSQSTLGIVPYPHCIGASCMCRLGPQAPLVFGVIAGLVGVLVT
GLLTLFVIVLYSRRSLNGAMHEHPPAYSIAGGDDLDEDPDDFDDQQFVQP
TKKYMPVPTE*

spliced messenger RNA

>Gcaud2073.t1 ID=Gcaud2073.t1|Name=Gcaud2073.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_917_length_16159_cov_4.533047:13251..14453- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGACACTCTCACATGGGGAAATGTCTCTGCTCCTGTAGTATTCGG
AGGTATCCTGGATGACAGCGCGGACTTTCAGCGCGACATGGTGGACGGAA
TTCTCGGTATGGCGTACAAAGCGCTCGCATGTAATCCTACTTGTGTTGAG
CCTCCTCTGCAACAGATGGTCAAGGCCGGCGTCATCTCGGACAGTTTTTC
TATCTGCGTTAATGCGCGAGGCGGCCGTCTGATACTTGGTGACTATGATC
CGTCGCTGGGCAAGACACCACCAACTGGCACCACGCTTGTTGTTGTATCT
GAGAGCACTTTTATTCTCATGTTGGATCACATGATGCGACATCACTGCGA
TGTAAAAGGATTATGTGAAGAACCTTCCTGGTTTATGCCCTCTGCCTGTG
TGCCGCTTCCAGACGAAGAACTCGAAAAAATGCCTTCCTTCGTGTTCCAT
CTTGGGTCAAACGGCGAGTTTGACATGGAATTACGACCTGCAGATTACAT
GTTACCAATCAACAAACCTGGCCAAGCAGGGTACCGCTGTGTGGGATTCA
TGGCTATGAAAGAAATGCAGGATGGCACAGATGTCATCTTCGGAAACACC
ATAATGCAACGCTACGTTACACACTACGACCGTCAGAATAAGCGTCTTGG
CTTTGCTGAGTCTGTCTCGGATTGCGGCGCTGTCACCAATTGTTCTTCGT
ACACGCAATGTCGAGAGTGCGCAGAGGCGGCGCCGCATTGTGCATTCGAC
TATCGTTCACATACATGTCAACAGTCACAATCAACTCTTGGCATTGTGCC
ATATCCCCATTGCATTGGTGCCTCTTGTATGTGTCGCTTGGGACCTCAAG
CGCCTCTGGTGTTCGGTGTGATCGCAGGACTTGTCGGTGTACTCGTCACA
GGTTTGCTGACGCTTTTCGTCATTGTGCTTTACAGTCGTCGCAGCCTAAA
TGGTGCGATGCATGAACATCCACCGGCTTACTCAATAGCTGGCGGTGATG
ATCTGGATGAGGATCCAGACGACTTTGATGATCAACAATTCGTTCAGCCT
ACCAAGAAGTATATGCCAGTTCCAACAGAATGA

protein sequence of Gcaud2073.t1

>Gcaud2073.t1 ID=Gcaud2073.t1|Name=Gcaud2073.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=361bp
MIDTLTWGNVSAPVVFGGILDDSADFQRDMVDGILGMAYKALACNPTCVE
PPLQQMVKAGVISDSFSICVNARGGRLILGDYDPSLGKTPPTGTTLVVVS
ESTFILMLDHMMRHHCDVKGLCEEPSWFMPSACVPLPDEELEKMPSFVFH
LGSNGEFDMELRPADYMLPINKPGQAGYRCVGFMAMKEMQDGTDVIFGNT
IMQRYVTHYDRQNKRLGFAESVSDCGAVTNCSSYTQCRECAEAAPHCAFD
YRSHTCQQSQSTLGIVPYPHCIGASCMCRLGPQAPLVFGVIAGLVGVLVT
GLLTLFVIVLYSRRSLNGAMHEHPPAYSIAGGDDLDEDPDDFDDQQFVQP
TKKYMPVPTE*

mRNA from alignment at NODE_917_length_16159_cov_4.533047:13251..14453-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2073.t1 ID=Gcaud2073.t1|Name=Gcaud2073.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_917_length_16159_cov_4.533047:13251..14453- (Gracilaria caudata M_176_S67 male)
ATGATTGACACTCTCACATGGGGAAATGTCTCTGCTCCTGTAGTATTCGG
AGGTATCCTGGATGACAGCGCGGACTTTCAGCGCGACATGGTGGACGGAA
TTCTCGGTATGGCGTACAAAGCGCTCGCATGTAATCCTACTTGTGTTGAG
CCTCCTCTGCAACAGATGGTCAAGGCCGGCGTCATCTCGGACAGTTTTTC
TATCTGCGTTAATGCGCGAGGCGGCCGTCTGATACTTGGTGACTATGATC
CGTCGCTGGGCAAGACACCACCAACGTACGTACCGCTTGCTCTCTCGGAT
CCACCCTCGTACTATACCATGAACATCTCAAACATAGTCACTGTCGGAGA
TCACCAGCTTAATGTTCCTAATTTGCGTTCGGGCATTCTAGACAGTGGCA
CCACGCTTGTTGTTGTATCTGAGAGCACTTTTATTCTCATGTTGGATCAC
ATGATGCGACATCACTGCGATGTAAAAGGATTATGTGAAGAACCTTCCTG
GTTTATGCCCTCTGCCTGTGTGCCGCTTCCAGACGAAGAACTCGAAAAAA
TGCCTTCCTTCGTGTTCCATCTTGGGTCAAACGGCGAGTTTGACATGGAA
TTACGACCTGCAGATTACATGTTACCAATCAACAAACCTGGCCAAGCAGG
GTACCGCTGTGTGGGATTCATGGCTATGAAAGAAATGCAGGATGGCACAG
ATGTCATCTTCGGAAACACCATAATGCAACGCTACGTTACACACTACGAC
CGTCAGAATAAGCGTCTTGGCTTTGCTGAGTCTGTCTCGGATTGCGGCGC
TGTCACCAATTGTTCTTCGTACACGCAATGTCGAGAGTGCGCAGAGGCGG
CGCCGCATTGTGCATTCGACTATCGTTCACATACATGTCAACAGTCACAA
TCAACTCTTGGCATTGTGCCATATCCCCATTGCATTGGTGCCTCTTGTAT
GTGTCGCTTGGGACCTCAAGCGCCTCTGGTGTTCGGTGTGATCGCAGGAC
TTGTCGGTGTACTCGTCACAGGTTTGCTGACGCTTTTCGTCATTGTGCTT
TACAGTCGTCGCAGCCTAAATGGTGCGATGCATGAACATCCACCGGCTTA
CTCAATAGCTGGCGGTGATGATCTGGATGAGGATCCAGACGACTTTGATG
ATCAACAATTCGTTCAGCCTACCAAGAAGTATATGCCAGTTCCAACAGAA
TGA

Coding sequence (CDS) from alignment at NODE_917_length_16159_cov_4.533047:13251..14453-

>Gcaud2073.t1 ID=Gcaud2073.t1|Name=Gcaud2073.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1083bp|location=Sequence derived from alignment at NODE_917_length_16159_cov_4.533047:13251..14453- (Gracilaria caudata M_176_S67 male)
ATGATTGACACTCTCACATGGGGAAATGTCTCTGCTCCTGTAGTATTCGG
AGGTATCCTGGATGACAGCGCGGACTTTCAGCGCGACATGGTGGACGGAA
TTCTCGGTATGGCGTACAAAGCGCTCGCATGTAATCCTACTTGTGTTGAG
CCTCCTCTGCAACAGATGGTCAAGGCCGGCGTCATCTCGGACAGTTTTTC
TATCTGCGTTAATGCGCGAGGCGGCCGTCTGATACTTGGTGACTATGATC
CGTCGCTGGGCAAGACACCACCAACTGGCACCACGCTTGTTGTTGTATCT
GAGAGCACTTTTATTCTCATGTTGGATCACATGATGCGACATCACTGCGA
TGTAAAAGGATTATGTGAAGAACCTTCCTGGTTTATGCCCTCTGCCTGTG
TGCCGCTTCCAGACGAAGAACTCGAAAAAATGCCTTCCTTCGTGTTCCAT
CTTGGGTCAAACGGCGAGTTTGACATGGAATTACGACCTGCAGATTACAT
GTTACCAATCAACAAACCTGGCCAAGCAGGGTACCGCTGTGTGGGATTCA
TGGCTATGAAAGAAATGCAGGATGGCACAGATGTCATCTTCGGAAACACC
ATAATGCAACGCTACGTTACACACTACGACCGTCAGAATAAGCGTCTTGG
CTTTGCTGAGTCTGTCTCGGATTGCGGCGCTGTCACCAATTGTTCTTCGT
ACACGCAATGTCGAGAGTGCGCAGAGGCGGCGCCGCATTGTGCATTCGAC
TATCGTTCACATACATGTCAACAGTCACAATCAACTCTTGGCATTGTGCC
ATATCCCCATTGCATTGGTGCCTCTTGTATGTGTCGCTTGGGACCTCAAG
CGCCTCTGGTGTTCGGTGTGATCGCAGGACTTGTCGGTGTACTCGTCACA
GGTTTGCTGACGCTTTTCGTCATTGTGCTTTACAGTCGTCGCAGCCTAAA
TGGTGCGATGCATGAACATCCACCGGCTTACTCAATAGCTGGCGGTGATG
ATCTGGATGAGGATCCAGACGACTTTGATGATCAACAATTCGTTCAGCCT
ACCAAGAAGTATATGCCAGTTCCAACAGAATGA