Gcaud2070.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2070.t1
Unique Name	Gcaud2070.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	281

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_917_length_16159_cov_4.533047	contig	NODE_917_length_16159_cov_4.533047:4845..5687 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3847.GLYMA02G08367.1
PFAMs	Mpv17_PMP22
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K13348
KEGG Pathway	ko04146,map04146
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Evalue	1.52e-17
EggNOG OGs	KOG1944@1\|root,KOG1944@2759\|Eukaryota,37K40@33090\|Viridiplantae,3GHCJ@35493\|Streptophyta,4JSD4@91835\|fabids
Description	Belongs to the peroxisomal membrane protein PXMP2 4 family
COG category	S
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2070	Gcaud2070	Gracilaria caudata M_176_S67 male	gene	NODE_917_length_16159_cov_4.533047 4845..5687 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2070.t1.start1	Gcaud2070.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_917_length_16159_cov_4.533047 4845..4847 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2070.t1.CDS1	Gcaud2070.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_917_length_16159_cov_4.533047 4845..5687 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2070.t1.exon1	Gcaud2070.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_917_length_16159_cov_4.533047 4845..5687 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2070.t1.stop1	Gcaud2070.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_917_length_16159_cov_4.533047 5685..5687 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2070.t1	Gcaud2070.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_917_length_16159_cov_4.533047 4845..5687 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_917_length_16159_cov_4.533047:4845..5687+
coding sequence from alignment at NODE_917_length_16159_cov_4.533047:4845..5687+

mRNA sequence

>Gcaud2070.t1 ID=Gcaud2070.t1|Name=Gcaud2070.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=281bp
MTVPIAAMHAAQKGRLPNPAVHSSIRRKCRFPRRSLGFLLLITVFVVVLY
DVVPSLIDASYVSSFHPHEVRRISRRTLRLYQRQLHLHPLSSRAITAGII
FFIADVSAQLLSTPPSAPLCHEFQFDRLFRYSLYGLVVMGPFLYVWYEAM
HTYGPADDLQGSLIKCLFEQLTLEPCCIIMYIAYDAVICRRGWLSTRKTL
ATKFLPLWFKNALFWLPANFANYYIGTPDLRVVFANLCSLFWNIYFSGNV
NRPSAQPAKFLNHDRRSAPSTPRRRSSNSV*

spliced messenger RNA

>Gcaud2070.t1 ID=Gcaud2070.t1|Name=Gcaud2070.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_917_length_16159_cov_4.533047:4845..5687+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTTCCCATCGCCGCCATGCACGCCGCGCAGAAGGGTCGTCTCCC
CAACCCCGCAGTACACAGCTCAATTCGTCGCAAATGTCGCTTTCCCCGCC
GTTCTCTCGGCTTTTTGCTCCTGATCACCGTCTTCGTCGTCGTTCTATAC
GACGTAGTCCCCAGTCTTATTGATGCTTCTTACGTCTCTTCTTTCCACCC
GCATGAAGTCCGCCGTATCTCTCGCCGCACGCTGCGACTGTATCAGCGCC
AGCTCCATCTGCACCCTTTGTCATCGCGTGCCATAACAGCGGGCATCATT
TTCTTCATTGCGGATGTCTCCGCCCAGTTGTTGTCAACACCGCCATCCGC
TCCTCTCTGTCACGAGTTTCAATTCGACAGACTCTTCAGATACTCTCTGT
ACGGGCTCGTCGTCATGGGTCCCTTCCTCTATGTGTGGTACGAAGCCATG
CATACATATGGACCAGCCGATGACTTACAAGGAAGTCTTATCAAGTGTCT
TTTTGAGCAACTAACCTTGGAGCCATGTTGCATCATCATGTACATCGCGT
ATGACGCCGTCATATGTCGTCGAGGTTGGCTATCCACCCGAAAGACACTC
GCCACAAAGTTTCTACCGCTTTGGTTCAAGAACGCATTGTTCTGGCTACC
GGCGAACTTTGCCAATTACTACATTGGAACTCCGGACTTGCGTGTTGTCT
TCGCTAATCTGTGCTCACTGTTTTGGAATATCTATTTCTCTGGGAACGTC
AACCGCCCATCCGCACAACCCGCAAAATTCTTGAATCACGACAGACGATC
TGCCCCTTCAACACCCCGTCGTCGCTCTTCAAACAGTGTATAG

protein sequence of Gcaud2070.t1

>Gcaud2070.t1 ID=Gcaud2070.t1|Name=Gcaud2070.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=281bp
MTVPIAAMHAAQKGRLPNPAVHSSIRRKCRFPRRSLGFLLLITVFVVVLY
DVVPSLIDASYVSSFHPHEVRRISRRTLRLYQRQLHLHPLSSRAITAGII
FFIADVSAQLLSTPPSAPLCHEFQFDRLFRYSLYGLVVMGPFLYVWYEAM
HTYGPADDLQGSLIKCLFEQLTLEPCCIIMYIAYDAVICRRGWLSTRKTL
ATKFLPLWFKNALFWLPANFANYYIGTPDLRVVFANLCSLFWNIYFSGNV
NRPSAQPAKFLNHDRRSAPSTPRRRSSNSV*

mRNA from alignment at NODE_917_length_16159_cov_4.533047:4845..5687+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2070.t1 ID=Gcaud2070.t1|Name=Gcaud2070.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_917_length_16159_cov_4.533047:4845..5687+ (Gracilaria caudata M_176_S67 male)
ATGACCGTTCCCATCGCCGCCATGCACGCCGCGCAGAAGGGTCGTCTCCC
CAACCCCGCAGTACACAGCTCAATTCGTCGCAAATGTCGCTTTCCCCGCC
GTTCTCTCGGCTTTTTGCTCCTGATCACCGTCTTCGTCGTCGTTCTATAC
GACGTAGTCCCCAGTCTTATTGATGCTTCTTACGTCTCTTCTTTCCACCC
GCATGAAGTCCGCCGTATCTCTCGCCGCACGCTGCGACTGTATCAGCGCC
AGCTCCATCTGCACCCTTTGTCATCGCGTGCCATAACAGCGGGCATCATT
TTCTTCATTGCGGATGTCTCCGCCCAGTTGTTGTCAACACCGCCATCCGC
TCCTCTCTGTCACGAGTTTCAATTCGACAGACTCTTCAGATACTCTCTGT
ACGGGCTCGTCGTCATGGGTCCCTTCCTCTATGTGTGGTACGAAGCCATG
CATACATATGGACCAGCCGATGACTTACAAGGAAGTCTTATCAAGTGTCT
TTTTGAGCAACTAACCTTGGAGCCATGTTGCATCATCATGTACATCGCGT
ATGACGCCGTCATATGTCGTCGAGGTTGGCTATCCACCCGAAAGACACTC
GCCACAAAGTTTCTACCGCTTTGGTTCAAGAACGCATTGTTCTGGCTACC
GGCGAACTTTGCCAATTACTACATTGGAACTCCGGACTTGCGTGTTGTCT
TCGCTAATCTGTGCTCACTGTTTTGGAATATCTATTTCTCTGGGAACGTC
AACCGCCCATCCGCACAACCCGCAAAATTCTTGAATCACGACAGACGATC
TGCCCCTTCAACACCCCGTCGTCGCTCTTCAAACAGTGTATAG

Coding sequence (CDS) from alignment at NODE_917_length_16159_cov_4.533047:4845..5687+

>Gcaud2070.t1 ID=Gcaud2070.t1|Name=Gcaud2070.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=843bp|location=Sequence derived from alignment at NODE_917_length_16159_cov_4.533047:4845..5687+ (Gracilaria caudata M_176_S67 male)
ATGACCGTTCCCATCGCCGCCATGCACGCCGCGCAGAAGGGTCGTCTCCC
CAACCCCGCAGTACACAGCTCAATTCGTCGCAAATGTCGCTTTCCCCGCC
GTTCTCTCGGCTTTTTGCTCCTGATCACCGTCTTCGTCGTCGTTCTATAC
GACGTAGTCCCCAGTCTTATTGATGCTTCTTACGTCTCTTCTTTCCACCC
GCATGAAGTCCGCCGTATCTCTCGCCGCACGCTGCGACTGTATCAGCGCC
AGCTCCATCTGCACCCTTTGTCATCGCGTGCCATAACAGCGGGCATCATT
TTCTTCATTGCGGATGTCTCCGCCCAGTTGTTGTCAACACCGCCATCCGC
TCCTCTCTGTCACGAGTTTCAATTCGACAGACTCTTCAGATACTCTCTGT
ACGGGCTCGTCGTCATGGGTCCCTTCCTCTATGTGTGGTACGAAGCCATG
CATACATATGGACCAGCCGATGACTTACAAGGAAGTCTTATCAAGTGTCT
TTTTGAGCAACTAACCTTGGAGCCATGTTGCATCATCATGTACATCGCGT
ATGACGCCGTCATATGTCGTCGAGGTTGGCTATCCACCCGAAAGACACTC
GCCACAAAGTTTCTACCGCTTTGGTTCAAGAACGCATTGTTCTGGCTACC
GGCGAACTTTGCCAATTACTACATTGGAACTCCGGACTTGCGTGTTGTCT
TCGCTAATCTGTGCTCACTGTTTTGGAATATCTATTTCTCTGGGAACGTC
AACCGCCCATCCGCACAACCCGCAAAATTCTTGAATCACGACAGACGATC
TGCCCCTTCAACACCCCGTCGTCGCTCTTCAAACAGTGTATAG