Gcaud2068.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2068.t1
Unique NameGcaud2068.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3690_length_3071_cov_4.564430contigNODE_3690_length_3071_cov_4.564430:8..696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog267608.RSp1581
Preferred namekatB
PFAMsCatalase,Catalase-rel
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00034,RC00767,RC02141,RC02755
KEGG koko:K03781
KEGG ReactionR00009,R00602,R02670
KEGG Pathwayko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014
KEGG ModuleM00532
GOsGO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016999,GO:0017001,GO:0017144,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0051186,GO:0051187,GO:0072593
Evalue6.39e-92
EggNOG OGsCOG0753@1|root,COG0753@2|Bacteria,1MUXZ@1224|Proteobacteria,2VGZA@28216|Betaproteobacteria,1K03A@119060|Burkholderiaceae
EC1.11.1.6
DescriptionBelongs to the catalase family
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2068Gcaud2068Gracilaria caudata M_176_S67 malegeneNODE_3690_length_3071_cov_4.564430 8..696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2068.t1.CDS1Gcaud2068.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3690_length_3071_cov_4.564430 8..696 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2068.t1.exon1Gcaud2068.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3690_length_3071_cov_4.564430 8..696 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2068.t1.start1Gcaud2068.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3690_length_3071_cov_4.564430 694..696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2068.t1Gcaud2068.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3690_length_3071_cov_4.564430 8..696 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2068.t1 ID=Gcaud2068.t1|Name=Gcaud2068.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=230bp
MGFPKNLLLAIVTQICSAHRILTGETGRYAGSNQHSQSASLHGPLLLQDI
YMLEKLRRFNHERIPERVVHARGAGAHGYFQPYRSLPHLTKAKLFNTNAT
TEIFVRFSTVIHGKHSPETVRDPRGFAIKFKTEEGNWDLVGNNLPVFFIR
DIMKFPDMVHSLKPDPVTNLQDPNRFFDFFSALGGMATQMLTFIYSDLGI
PASYRFMDGNSVHAFKFVNKKREVTYVKFR
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spliced messenger RNA

>Gcaud2068.t1 ID=Gcaud2068.t1|Name=Gcaud2068.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=689bp|location=Sequence derived from alignment at NODE_3690_length_3071_cov_4.564430:8..696- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTTCCCGAAAAATTTGTTGCTTGCCATTGTAACTCAAATCTGTTC
GGCGCATCGGATTCTTACGGGAGAGACCGGACGATACGCAGGCTCCAACC
AGCACTCGCAGTCAGCATCTCTTCACGGTCCACTTCTCCTCCAAGATATC
TACATGCTAGAAAAACTTCGCCGATTCAACCATGAACGCATCCCAGAACG
CGTCGTACATGCAAGAGGAGCGGGTGCTCACGGTTACTTTCAACCTTATC
GTTCATTGCCTCATCTCACAAAAGCCAAGCTTTTCAACACCAACGCCACC
ACCGAGATTTTTGTGCGCTTCTCCACTGTGATTCACGGAAAACACTCTCC
GGAGACCGTCCGCGATCCGAGAGGCTTCGCAATCAAGTTCAAGACCGAGG
AGGGAAATTGGGATCTGGTGGGCAACAACTTGCCCGTGTTCTTCATTCGA
GATATCATGAAATTCCCGGACATGGTGCACAGTCTGAAACCGGATCCAGT
CACCAATTTGCAAGACCCGAACCGCTTCTTCGATTTCTTCTCCGCGTTGG
GCGGAATGGCCACCCAAATGCTCACTTTCATTTACTCGGATCTTGGCATT
CCGGCTTCGTATCGGTTTATGGACGGAAACTCCGTACATGCGTTCAAGTT
TGTCAACAAGAAGCGAGAAGTCACATATGTGAAGTTTCG
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protein sequence of Gcaud2068.t1

>Gcaud2068.t1 ID=Gcaud2068.t1|Name=Gcaud2068.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=230bp
MGFPKNLLLAIVTQICSAHRILTGETGRYAGSNQHSQSASLHGPLLLQDI
YMLEKLRRFNHERIPERVVHARGAGAHGYFQPYRSLPHLTKAKLFNTNAT
TEIFVRFSTVIHGKHSPETVRDPRGFAIKFKTEEGNWDLVGNNLPVFFIR
DIMKFPDMVHSLKPDPVTNLQDPNRFFDFFSALGGMATQMLTFIYSDLGI
PASYRFMDGNSVHAFKFVNKKREVTYVKFR
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mRNA from alignment at NODE_3690_length_3071_cov_4.564430:8..696-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2068.t1 ID=Gcaud2068.t1|Name=Gcaud2068.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=689bp|location=Sequence derived from alignment at NODE_3690_length_3071_cov_4.564430:8..696- (Gracilaria caudata M_176_S67 male)
ATGGGGTTCCCGAAAAATTTGTTGCTTGCCATTGTAACTCAAATCTGTTC
GGCGCATCGGATTCTTACGGGAGAGACCGGACGATACGCAGGCTCCAACC
AGCACTCGCAGTCAGCATCTCTTCACGGTCCACTTCTCCTCCAAGATATC
TACATGCTAGAAAAACTTCGCCGATTCAACCATGAACGCATCCCAGAACG
CGTCGTACATGCAAGAGGAGCGGGTGCTCACGGTTACTTTCAACCTTATC
GTTCATTGCCTCATCTCACAAAAGCCAAGCTTTTCAACACCAACGCCACC
ACCGAGATTTTTGTGCGCTTCTCCACTGTGATTCACGGAAAACACTCTCC
GGAGACCGTCCGCGATCCGAGAGGCTTCGCAATCAAGTTCAAGACCGAGG
AGGGAAATTGGGATCTGGTGGGCAACAACTTGCCCGTGTTCTTCATTCGA
GATATCATGAAATTCCCGGACATGGTGCACAGTCTGAAACCGGATCCAGT
CACCAATTTGCAAGACCCGAACCGCTTCTTCGATTTCTTCTCCGCGTTGG
GCGGAATGGCCACCCAAATGCTCACTTTCATTTACTCGGATCTTGGCATT
CCGGCTTCGTATCGGTTTATGGACGGAAACTCCGTACATGCGTTCAAGTT
TGTCAACAAGAAGCGAGAAGTCACATATGTGAAGTTTCG
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Coding sequence (CDS) from alignment at NODE_3690_length_3071_cov_4.564430:8..696-

>Gcaud2068.t1 ID=Gcaud2068.t1|Name=Gcaud2068.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=689bp|location=Sequence derived from alignment at NODE_3690_length_3071_cov_4.564430:8..696- (Gracilaria caudata M_176_S67 male)
ATGGGGTTCCCGAAAAATTTGTTGCTTGCCATTGTAACTCAAATCTGTTC
GGCGCATCGGATTCTTACGGGAGAGACCGGACGATACGCAGGCTCCAACC
AGCACTCGCAGTCAGCATCTCTTCACGGTCCACTTCTCCTCCAAGATATC
TACATGCTAGAAAAACTTCGCCGATTCAACCATGAACGCATCCCAGAACG
CGTCGTACATGCAAGAGGAGCGGGTGCTCACGGTTACTTTCAACCTTATC
GTTCATTGCCTCATCTCACAAAAGCCAAGCTTTTCAACACCAACGCCACC
ACCGAGATTTTTGTGCGCTTCTCCACTGTGATTCACGGAAAACACTCTCC
GGAGACCGTCCGCGATCCGAGAGGCTTCGCAATCAAGTTCAAGACCGAGG
AGGGAAATTGGGATCTGGTGGGCAACAACTTGCCCGTGTTCTTCATTCGA
GATATCATGAAATTCCCGGACATGGTGCACAGTCTGAAACCGGATCCAGT
CACCAATTTGCAAGACCCGAACCGCTTCTTCGATTTCTTCTCCGCGTTGG
GCGGAATGGCCACCCAAATGCTCACTTTCATTTACTCGGATCTTGGCATT
CCGGCTTCGTATCGGTTTATGGACGGAAACTCCGTACATGCGTTCAAGTT
TGTCAACAAGAAGCGAGAAGTCACATATGTGAAGTTTCG
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