Gcaud2064.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2064.t1
Unique NameGcaud2064.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length75
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_15662_length_346_cov_4.780392contigNODE_15662_length_346_cov_4.780392:2..226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123401.JHYQ01000002_gene2713
PFAMsASH,An_peroxidase,HCBP_related,HemolysinCabind
Max annot lvl1236|Gammaproteobacteria
Evalue1.25e-16
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,1RZD3@1236|Gammaproteobacteria
DescriptionAnimal haem peroxidase
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2064Gcaud2064Gracilaria caudata M_176_S67 malegeneNODE_15662_length_346_cov_4.780392 2..226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2064.t1.CDS1Gcaud2064.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_15662_length_346_cov_4.780392 2..226 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2064.t1.exon1Gcaud2064.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_15662_length_346_cov_4.780392 2..226 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2064.t1.start1Gcaud2064.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_15662_length_346_cov_4.780392 224..226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2064.t1Gcaud2064.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_15662_length_346_cov_4.780392 2..226 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2064.t1 ID=Gcaud2064.t1|Name=Gcaud2064.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=75bp
MEPDSMYEAARAINIAQYQKVIYEEWLPAMLGRPLPRYTGYKQNVDPTIS
VEFTTAGFRLGHTMVGNGVSRIDAN
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spliced messenger RNA

>Gcaud2064.t1 ID=Gcaud2064.t1|Name=Gcaud2064.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp|location=Sequence derived from alignment at NODE_15662_length_346_cov_4.780392:2..226- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCCGACAGCATGTATGAAGCAGCTCGCGCCATCAATATCGCCCA
GTACCAAAAGGTTATCTACGAGGAGTGGTTACCGGCTATGTTGGGTCGCC
CTCTTCCTCGCTATACCGGCTACAAGCAGAATGTGGACCCCACTATTAGT
GTGGAGTTCACTACGGCCGGTTTCCGACTCGGGCACACCATGGTTGGCAA
CGGAGTGAGCAGGATCGACGCCAAC
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protein sequence of Gcaud2064.t1

>Gcaud2064.t1 ID=Gcaud2064.t1|Name=Gcaud2064.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=75bp
MEPDSMYEAARAINIAQYQKVIYEEWLPAMLGRPLPRYTGYKQNVDPTIS
VEFTTAGFRLGHTMVGNGVSRIDAN
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mRNA from alignment at NODE_15662_length_346_cov_4.780392:2..226-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2064.t1 ID=Gcaud2064.t1|Name=Gcaud2064.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp|location=Sequence derived from alignment at NODE_15662_length_346_cov_4.780392:2..226- (Gracilaria caudata M_176_S67 male)
ATGGAACCCGACAGCATGTATGAAGCAGCTCGCGCCATCAATATCGCCCA
GTACCAAAAGGTTATCTACGAGGAGTGGTTACCGGCTATGTTGGGTCGCC
CTCTTCCTCGCTATACCGGCTACAAGCAGAATGTGGACCCCACTATTAGT
GTGGAGTTCACTACGGCCGGTTTCCGACTCGGGCACACCATGGTTGGCAA
CGGAGTGAGCAGGATCGACGCCAAC
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Coding sequence (CDS) from alignment at NODE_15662_length_346_cov_4.780392:2..226-

>Gcaud2064.t1 ID=Gcaud2064.t1|Name=Gcaud2064.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=225bp|location=Sequence derived from alignment at NODE_15662_length_346_cov_4.780392:2..226- (Gracilaria caudata M_176_S67 male)
ATGGAACCCGACAGCATGTATGAAGCAGCTCGCGCCATCAATATCGCCCA
GTACCAAAAGGTTATCTACGAGGAGTGGTTACCGGCTATGTTGGGTCGCC
CTCTTCCTCGCTATACCGGCTACAAGCAGAATGTGGACCCCACTATTAGT
GTGGAGTTCACTACGGCCGGTTTCCGACTCGGGCACACCATGGTTGGCAA
CGGAGTGAGCAGGATCGACGCCAAC
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