Gcaud2049.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2049.t1
Unique Name	Gcaud2049.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	193

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_795_length_17855_cov_4.297850	contig	NODE_795_length_17855_cov_4.297850:11895..12794 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2049	Gcaud2049	Gracilaria caudata M_176_S67 male	gene	NODE_795_length_17855_cov_4.297850 11895..12794 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2049.t1	Gcaud2049.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_795_length_17855_cov_4.297850 11895..12794 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2049.t1.stop1	Gcaud2049.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_795_length_17855_cov_4.297850 11895..11897 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2049.t1.CDS1	Gcaud2049.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_795_length_17855_cov_4.297850 11895..12243 -
Gcaud2049.t1.CDS2	Gcaud2049.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_795_length_17855_cov_4.297850 12565..12794 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2049.t1.exon1	Gcaud2049.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_795_length_17855_cov_4.297850 11895..12243 -
Gcaud2049.t1.exon2	Gcaud2049.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_795_length_17855_cov_4.297850 12565..12794 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2049.t1.intron1	Gcaud2049.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_795_length_17855_cov_4.297850 12244..12564 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2049.t1.start1	Gcaud2049.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_795_length_17855_cov_4.297850 12792..12794 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_795_length_17855_cov_4.297850:11895..12794-
coding sequence from alignment at NODE_795_length_17855_cov_4.297850:11895..12794-

mRNA sequence

>Gcaud2049.t1 ID=Gcaud2049.t1|Name=Gcaud2049.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=193bp
MGDLSVTVLVGRSRWQFAISPQATFGQLRSLVEQKEGAVQDGLRLIFKGK
SYPNHTKLCEARVVNGAKMMALRTAKQGKILKDEATLEQVGAKHGSSFML
LFNAKHHDAVEHKQQISSIDHQLQQLEANASAVSSQVEHRLLDSVDLAVK
KSELQDVLHRLKDNLFSVPSDDERRASMQQRLEAVERVISQL*

spliced messenger RNA

>Gcaud2049.t1 ID=Gcaud2049.t1|Name=Gcaud2049.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=579bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:11895..12794- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGATTTGAGCGTCACCGTGCTGGTGGGCAGGAGTCGATGGCAGTT
TGCCATCTCGCCACAGGCGACGTTTGGCCAGCTTCGCTCGCTGGTGGAAC
AGAAGGAGGGCGCTGTTCAAGATGGCCTGCGTCTCATATTCAAGGGCAAG
TCGTATCCGAATCATACCAAGCTCTGTGAGGCGCGCGTGGTCAATGGCGC
GAAGATGATGGCGTTGCGCACTGCCAAACAAGGCAAGATTCTCAAAGATG
AAGCCACTTTAGAACAAGTCGGCGCCAAACATGGCAGTTCGTTTATGCTT
CTGTTCAATGCAAAACACCACGATGCAGTGGAACACAAGCAACAAATCTC
CTCCATCGACCATCAATTACAGCAGCTTGAGGCCAACGCTAGCGCTGTTA
GCTCACAGGTTGAGCATCGATTGTTGGATTCTGTCGATCTTGCTGTGAAG
AAGAGCGAGTTGCAGGACGTTCTTCATCGACTCAAGGATAACCTGTTTTC
GGTTCCAAGTGACGATGAGAGAAGGGCTTCAATGCAACAGCGATTGGAAG
CTGTCGAGCGTGTTATTTCTCAACTGTGA

protein sequence of Gcaud2049.t1

>Gcaud2049.t1 ID=Gcaud2049.t1|Name=Gcaud2049.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=193bp
MGDLSVTVLVGRSRWQFAISPQATFGQLRSLVEQKEGAVQDGLRLIFKGK
SYPNHTKLCEARVVNGAKMMALRTAKQGKILKDEATLEQVGAKHGSSFML
LFNAKHHDAVEHKQQISSIDHQLQQLEANASAVSSQVEHRLLDSVDLAVK
KSELQDVLHRLKDNLFSVPSDDERRASMQQRLEAVERVISQL*

mRNA from alignment at NODE_795_length_17855_cov_4.297850:11895..12794-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2049.t1 ID=Gcaud2049.t1|Name=Gcaud2049.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=900bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:11895..12794- (Gracilaria caudata M_176_S67 male)
ATGGGCGATTTGAGCGTCACCGTGCTGGTGGGCAGGAGTCGATGGCAGTT
TGCCATCTCGCCACAGGCGACGTTTGGCCAGCTTCGCTCGCTGGTGGAAC
AGAAGGAGGGCGCTGTTCAAGATGGCCTGCGTCTCATATTCAAGGGCAAG
TCGTATCCGAATCATACCAAGCTCTGTGAGGCGCGCGTGGTCAATGGCGC
GAAGATGATGGCGTTGCGCACTGCCAAACAGTGCAATGAGGAAAGTGCGC
AGCAAAAGAGGGCCGCGTTGAACGCTCGACAACACAAAACGCTGTCGGAG
ATGAGACATGAAGCATCGGCGAGTGCGAGGGCGAGTGCGAACGCGTCTTC
GGCGAACGCCGCTCAATCGAGCGTTCGTGCCATTCTTGGCGATGATCCGG
TGGAAGGTGTTCCCTGTGTGCTGATCATTCATGCGCGACAAAAATATAGG
TTCAATGTTCAAATGTCACACACAGTGCTCAGTCTCAAGGAGAAGGCCGC
CGCCATGCCATCCATTCAATCGCGTCCATCAAACATGCGTCTCCTATTCA
GAGGCAAGATTCTCAAAGATGAAGCCACTTTAGAACAAGTCGGCGCCAAA
CATGGCAGTTCGTTTATGCTTCTGTTCAATGCAAAACACCACGATGCAGT
GGAACACAAGCAACAAATCTCCTCCATCGACCATCAATTACAGCAGCTTG
AGGCCAACGCTAGCGCTGTTAGCTCACAGGTTGAGCATCGATTGTTGGAT
TCTGTCGATCTTGCTGTGAAGAAGAGCGAGTTGCAGGACGTTCTTCATCG
ACTCAAGGATAACCTGTTTTCGGTTCCAAGTGACGATGAGAGAAGGGCTT
CAATGCAACAGCGATTGGAAGCTGTCGAGCGTGTTATTTCTCAACTGTGA

Coding sequence (CDS) from alignment at NODE_795_length_17855_cov_4.297850:11895..12794-

>Gcaud2049.t1 ID=Gcaud2049.t1|Name=Gcaud2049.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=579bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:11895..12794- (Gracilaria caudata M_176_S67 male)
ATGGGCGATTTGAGCGTCACCGTGCTGGTGGGCAGGAGTCGATGGCAGTT
TGCCATCTCGCCACAGGCGACGTTTGGCCAGCTTCGCTCGCTGGTGGAAC
AGAAGGAGGGCGCTGTTCAAGATGGCCTGCGTCTCATATTCAAGGGCAAG
TCGTATCCGAATCATACCAAGCTCTGTGAGGCGCGCGTGGTCAATGGCGC
GAAGATGATGGCGTTGCGCACTGCCAAACAAGGCAAGATTCTCAAAGATG
AAGCCACTTTAGAACAAGTCGGCGCCAAACATGGCAGTTCGTTTATGCTT
CTGTTCAATGCAAAACACCACGATGCAGTGGAACACAAGCAACAAATCTC
CTCCATCGACCATCAATTACAGCAGCTTGAGGCCAACGCTAGCGCTGTTA
GCTCACAGGTTGAGCATCGATTGTTGGATTCTGTCGATCTTGCTGTGAAG
AAGAGCGAGTTGCAGGACGTTCTTCATCGACTCAAGGATAACCTGTTTTC
GGTTCCAAGTGACGATGAGAGAAGGGCTTCAATGCAACAGCGATTGGAAG
CTGTCGAGCGTGTTATTTCTCAACTGTGA