Gcaud2048.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2048.t1
Unique NameGcaud2048.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_795_length_17855_cov_4.297850contigNODE_795_length_17855_cov_4.297850:10089..10853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705801.1
PFAMsSBDS,SBDS_C
Max annot lvl2759|Eukaryota
KEGG koko:K14574
KEGG Pathwayko03008,map03008
Evalue4.53e-51
EggNOG OGsCOG1500@1|root,KOG2917@2759|Eukaryota
Descriptionmature ribosome assembly
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2048Gcaud2048Gracilaria caudata M_176_S67 malegeneNODE_795_length_17855_cov_4.297850 10089..10853 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2048.t1.stop1Gcaud2048.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_795_length_17855_cov_4.297850 10089..10091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2048.t1.CDS1Gcaud2048.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_795_length_17855_cov_4.297850 10089..10853 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2048.t1.exon1Gcaud2048.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_795_length_17855_cov_4.297850 10089..10853 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2048.t1.start1Gcaud2048.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_795_length_17855_cov_4.297850 10851..10853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2048.t1Gcaud2048.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_795_length_17855_cov_4.297850 10089..10853 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2048.t1 ID=Gcaud2048.t1|Name=Gcaud2048.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=255bp
MPEMLVRLKKGKKTYEVMVEEGMVPKYREGSVKRIEDVVVTPVVFVNASK
GTKASSEQLNDSFQTDDVMAIIELILQKGEAQESAGERKSKMDAKRQEII
NAIQKNYVSPEGTPLPVMRIENALEQVRPRIDVDVDAARQVTAMYQKLSA
VMPMKKSSSGLEGTVTVPTHFAGQVSGIVRKHCTVLRETYRDKAKYDVEI
HAYDQLMSDLARATKGDFEFSMTTNAAAVATSSNAPAAAASSSGKKGKGK
KKRK*
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spliced messenger RNA

>Gcaud2048.t1 ID=Gcaud2048.t1|Name=Gcaud2048.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=765bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:10089..10853- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGAAATGCTTGTGAGACTGAAGAAAGGGAAGAAGACCTATGAGGT
CATGGTCGAAGAAGGCATGGTGCCGAAATATCGAGAAGGAAGCGTGAAGC
GCATAGAAGATGTTGTCGTCACTCCCGTCGTTTTTGTCAACGCTAGCAAA
GGCACAAAAGCCAGCAGCGAGCAGCTCAACGACTCATTTCAGACTGATGA
CGTGATGGCAATCATCGAGTTAATCCTACAAAAGGGTGAAGCGCAGGAAA
GTGCTGGCGAACGCAAGTCTAAGATGGATGCTAAGCGACAAGAGATTATC
AATGCTATCCAGAAGAATTACGTTTCTCCGGAAGGCACGCCTCTGCCTGT
AATGAGGATTGAAAACGCGCTCGAGCAAGTGAGACCAAGAATCGACGTGG
ACGTTGATGCCGCGCGACAAGTGACGGCCATGTATCAGAAACTAAGTGCG
GTGATGCCAATGAAGAAAAGCAGCAGTGGTTTGGAAGGAACTGTTACCGT
GCCCACTCATTTCGCGGGGCAAGTATCTGGAATTGTACGCAAGCACTGCA
CGGTTTTGCGAGAAACATATAGAGACAAAGCAAAGTATGACGTGGAAATA
CATGCTTATGATCAGCTCATGTCTGATCTTGCGCGCGCAACAAAAGGTGA
CTTTGAATTCAGTATGACAACAAATGCGGCTGCCGTGGCGACATCGAGTA
ATGCACCAGCGGCTGCCGCCAGCTCTTCTGGAAAGAAAGGGAAGGGAAAG
AAGAAGAGAAAGTGA
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protein sequence of Gcaud2048.t1

>Gcaud2048.t1 ID=Gcaud2048.t1|Name=Gcaud2048.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=255bp
MPEMLVRLKKGKKTYEVMVEEGMVPKYREGSVKRIEDVVVTPVVFVNASK
GTKASSEQLNDSFQTDDVMAIIELILQKGEAQESAGERKSKMDAKRQEII
NAIQKNYVSPEGTPLPVMRIENALEQVRPRIDVDVDAARQVTAMYQKLSA
VMPMKKSSSGLEGTVTVPTHFAGQVSGIVRKHCTVLRETYRDKAKYDVEI
HAYDQLMSDLARATKGDFEFSMTTNAAAVATSSNAPAAAASSSGKKGKGK
KKRK*
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mRNA from alignment at NODE_795_length_17855_cov_4.297850:10089..10853-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2048.t1 ID=Gcaud2048.t1|Name=Gcaud2048.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=765bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:10089..10853- (Gracilaria caudata M_176_S67 male)
ATGCCGGAAATGCTTGTGAGACTGAAGAAAGGGAAGAAGACCTATGAGGT
CATGGTCGAAGAAGGCATGGTGCCGAAATATCGAGAAGGAAGCGTGAAGC
GCATAGAAGATGTTGTCGTCACTCCCGTCGTTTTTGTCAACGCTAGCAAA
GGCACAAAAGCCAGCAGCGAGCAGCTCAACGACTCATTTCAGACTGATGA
CGTGATGGCAATCATCGAGTTAATCCTACAAAAGGGTGAAGCGCAGGAAA
GTGCTGGCGAACGCAAGTCTAAGATGGATGCTAAGCGACAAGAGATTATC
AATGCTATCCAGAAGAATTACGTTTCTCCGGAAGGCACGCCTCTGCCTGT
AATGAGGATTGAAAACGCGCTCGAGCAAGTGAGACCAAGAATCGACGTGG
ACGTTGATGCCGCGCGACAAGTGACGGCCATGTATCAGAAACTAAGTGCG
GTGATGCCAATGAAGAAAAGCAGCAGTGGTTTGGAAGGAACTGTTACCGT
GCCCACTCATTTCGCGGGGCAAGTATCTGGAATTGTACGCAAGCACTGCA
CGGTTTTGCGAGAAACATATAGAGACAAAGCAAAGTATGACGTGGAAATA
CATGCTTATGATCAGCTCATGTCTGATCTTGCGCGCGCAACAAAAGGTGA
CTTTGAATTCAGTATGACAACAAATGCGGCTGCCGTGGCGACATCGAGTA
ATGCACCAGCGGCTGCCGCCAGCTCTTCTGGAAAGAAAGGGAAGGGAAAG
AAGAAGAGAAAGTGA
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Coding sequence (CDS) from alignment at NODE_795_length_17855_cov_4.297850:10089..10853-

>Gcaud2048.t1 ID=Gcaud2048.t1|Name=Gcaud2048.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=765bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:10089..10853- (Gracilaria caudata M_176_S67 male)
ATGCCGGAAATGCTTGTGAGACTGAAGAAAGGGAAGAAGACCTATGAGGT
CATGGTCGAAGAAGGCATGGTGCCGAAATATCGAGAAGGAAGCGTGAAGC
GCATAGAAGATGTTGTCGTCACTCCCGTCGTTTTTGTCAACGCTAGCAAA
GGCACAAAAGCCAGCAGCGAGCAGCTCAACGACTCATTTCAGACTGATGA
CGTGATGGCAATCATCGAGTTAATCCTACAAAAGGGTGAAGCGCAGGAAA
GTGCTGGCGAACGCAAGTCTAAGATGGATGCTAAGCGACAAGAGATTATC
AATGCTATCCAGAAGAATTACGTTTCTCCGGAAGGCACGCCTCTGCCTGT
AATGAGGATTGAAAACGCGCTCGAGCAAGTGAGACCAAGAATCGACGTGG
ACGTTGATGCCGCGCGACAAGTGACGGCCATGTATCAGAAACTAAGTGCG
GTGATGCCAATGAAGAAAAGCAGCAGTGGTTTGGAAGGAACTGTTACCGT
GCCCACTCATTTCGCGGGGCAAGTATCTGGAATTGTACGCAAGCACTGCA
CGGTTTTGCGAGAAACATATAGAGACAAAGCAAAGTATGACGTGGAAATA
CATGCTTATGATCAGCTCATGTCTGATCTTGCGCGCGCAACAAAAGGTGA
CTTTGAATTCAGTATGACAACAAATGCGGCTGCCGTGGCGACATCGAGTA
ATGCACCAGCGGCTGCCGCCAGCTCTTCTGGAAAGAAAGGGAAGGGAAAG
AAGAAGAGAAAGTGA
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