Gcaud2045.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2045.t1
Unique Name	Gcaud2045.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	220

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_795_length_17855_cov_4.297850	contig	NODE_795_length_17855_cov_4.297850:4675..5334 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4565.Traes_5DL_B835B25B7.1
PFAMs	DEK_C,SWIB
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15223
GOs	GO:0000120,GO:0000500,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006355,GO:0006356,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045943,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue	6.2e-12
EggNOG OGs	COG5531@1\|root,KOG1946@2759\|Eukaryota,37Q9W@33090\|Viridiplantae,3GDB0@35493\|Streptophyta,3KUZQ@4447\|Liliopsida,3I5XR@38820\|Poales
Description	SWI complex, BAF60b domains
COG category	K
BRITE	ko00000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2045	Gcaud2045	Gracilaria caudata M_176_S67 male	gene	NODE_795_length_17855_cov_4.297850 4675..5334 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2045.t1.stop1	Gcaud2045.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_795_length_17855_cov_4.297850 4675..4677 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2045.t1.CDS1	Gcaud2045.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_795_length_17855_cov_4.297850 4675..5334 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2045.t1.exon1	Gcaud2045.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_795_length_17855_cov_4.297850 4675..5334 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2045.t1.start1	Gcaud2045.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_795_length_17855_cov_4.297850 5332..5334 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2045.t1	Gcaud2045.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_795_length_17855_cov_4.297850 4675..5334 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_795_length_17855_cov_4.297850:4675..5334-
coding sequence from alignment at NODE_795_length_17855_cov_4.297850:4675..5334-

mRNA sequence

>Gcaud2045.t1 ID=Gcaud2045.t1|Name=Gcaud2045.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=220bp
MNTPVVVSKELRNCIGGNDITNRSQILADLSKYIRENNLYVDGESKRVLC
DERLSSLLNVVGEVDFWDLFRRLKPHLTDPSDLGPEYESRAIMFFEKYLK
QRGALASWLAPPRRKDPRGANSAAAQRQLRKHRQGMFAEVHIEPCLRPLC
DGKSRLPRPEVLKSVWVFIKKNNLQVATNRRRIRVTETLRDALRLPNVEW
IDSFRLGSYVFKLTSKREQ*

spliced messenger RNA

>Gcaud2045.t1 ID=Gcaud2045.t1|Name=Gcaud2045.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:4675..5334- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACCCCAGTTGTGGTTTCTAAGGAGTTGCGGAATTGTATTGGCGG
AAATGATATAACCAACCGTTCACAGATTCTAGCGGACCTTAGCAAGTACA
TTAGAGAAAACAACTTGTATGTGGATGGTGAAAGCAAGCGCGTTTTGTGT
GATGAGCGATTGTCGTCACTCCTAAACGTGGTGGGCGAAGTGGACTTCTG
GGATTTATTCCGACGTCTCAAACCTCACCTTACAGATCCTTCAGACTTGG
GTCCCGAGTACGAGTCACGTGCGATCATGTTCTTTGAAAAGTATCTTAAA
CAGAGAGGTGCCCTCGCTTCTTGGCTTGCACCTCCGCGAAGAAAGGATCC
TCGTGGTGCAAACTCTGCTGCTGCACAAAGACAGCTAAGAAAACACCGTC
AGGGGATGTTTGCTGAAGTGCATATTGAACCGTGTCTTCGTCCTCTTTGC
GATGGGAAATCTCGCTTACCGAGACCAGAAGTGTTGAAATCTGTGTGGGT
GTTCATCAAGAAGAACAATCTGCAAGTCGCTACAAATAGAAGACGGATCC
GCGTTACTGAAACCCTTCGCGATGCGCTGAGACTTCCCAACGTTGAATGG
ATCGATTCTTTTAGACTGGGGAGCTACGTTTTCAAGCTGACGTCAAAGAG
GGAACAATAA

protein sequence of Gcaud2045.t1

>Gcaud2045.t1 ID=Gcaud2045.t1|Name=Gcaud2045.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=220bp
MNTPVVVSKELRNCIGGNDITNRSQILADLSKYIRENNLYVDGESKRVLC
DERLSSLLNVVGEVDFWDLFRRLKPHLTDPSDLGPEYESRAIMFFEKYLK
QRGALASWLAPPRRKDPRGANSAAAQRQLRKHRQGMFAEVHIEPCLRPLC
DGKSRLPRPEVLKSVWVFIKKNNLQVATNRRRIRVTETLRDALRLPNVEW
IDSFRLGSYVFKLTSKREQ*

mRNA from alignment at NODE_795_length_17855_cov_4.297850:4675..5334-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2045.t1 ID=Gcaud2045.t1|Name=Gcaud2045.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:4675..5334- (Gracilaria caudata M_176_S67 male)
ATGAACACCCCAGTTGTGGTTTCTAAGGAGTTGCGGAATTGTATTGGCGG
AAATGATATAACCAACCGTTCACAGATTCTAGCGGACCTTAGCAAGTACA
TTAGAGAAAACAACTTGTATGTGGATGGTGAAAGCAAGCGCGTTTTGTGT
GATGAGCGATTGTCGTCACTCCTAAACGTGGTGGGCGAAGTGGACTTCTG
GGATTTATTCCGACGTCTCAAACCTCACCTTACAGATCCTTCAGACTTGG
GTCCCGAGTACGAGTCACGTGCGATCATGTTCTTTGAAAAGTATCTTAAA
CAGAGAGGTGCCCTCGCTTCTTGGCTTGCACCTCCGCGAAGAAAGGATCC
TCGTGGTGCAAACTCTGCTGCTGCACAAAGACAGCTAAGAAAACACCGTC
AGGGGATGTTTGCTGAAGTGCATATTGAACCGTGTCTTCGTCCTCTTTGC
GATGGGAAATCTCGCTTACCGAGACCAGAAGTGTTGAAATCTGTGTGGGT
GTTCATCAAGAAGAACAATCTGCAAGTCGCTACAAATAGAAGACGGATCC
GCGTTACTGAAACCCTTCGCGATGCGCTGAGACTTCCCAACGTTGAATGG
ATCGATTCTTTTAGACTGGGGAGCTACGTTTTCAAGCTGACGTCAAAGAG
GGAACAATAA

Coding sequence (CDS) from alignment at NODE_795_length_17855_cov_4.297850:4675..5334-

>Gcaud2045.t1 ID=Gcaud2045.t1|Name=Gcaud2045.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=660bp|location=Sequence derived from alignment at NODE_795_length_17855_cov_4.297850:4675..5334- (Gracilaria caudata M_176_S67 male)
ATGAACACCCCAGTTGTGGTTTCTAAGGAGTTGCGGAATTGTATTGGCGG
AAATGATATAACCAACCGTTCACAGATTCTAGCGGACCTTAGCAAGTACA
TTAGAGAAAACAACTTGTATGTGGATGGTGAAAGCAAGCGCGTTTTGTGT
GATGAGCGATTGTCGTCACTCCTAAACGTGGTGGGCGAAGTGGACTTCTG
GGATTTATTCCGACGTCTCAAACCTCACCTTACAGATCCTTCAGACTTGG
GTCCCGAGTACGAGTCACGTGCGATCATGTTCTTTGAAAAGTATCTTAAA
CAGAGAGGTGCCCTCGCTTCTTGGCTTGCACCTCCGCGAAGAAAGGATCC
TCGTGGTGCAAACTCTGCTGCTGCACAAAGACAGCTAAGAAAACACCGTC
AGGGGATGTTTGCTGAAGTGCATATTGAACCGTGTCTTCGTCCTCTTTGC
GATGGGAAATCTCGCTTACCGAGACCAGAAGTGTTGAAATCTGTGTGGGT
GTTCATCAAGAAGAACAATCTGCAAGTCGCTACAAATAGAAGACGGATCC
GCGTTACTGAAACCCTTCGCGATGCGCTGAGACTTCCCAACGTTGAATGG
ATCGATTCTTTTAGACTGGGGAGCTACGTTTTCAAGCTGACGTCAAAGAG
GGAACAATAA