Gcaud204.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud204.t1
Unique Name	Gcaud204.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	500

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3964_length_2733_cov_4.457608	contig	NODE_3964_length_2733_cov_4.457608:597..2096 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud204	Gcaud204	Gracilaria caudata M_176_S67 male	gene	NODE_3964_length_2733_cov_4.457608 597..2096 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud204.t1.stop1	Gcaud204.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3964_length_2733_cov_4.457608 597..599 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud204.t1.CDS1	Gcaud204.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3964_length_2733_cov_4.457608 597..2096 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud204.t1.exon1	Gcaud204.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3964_length_2733_cov_4.457608 597..2096 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud204.t1.start1	Gcaud204.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3964_length_2733_cov_4.457608 2094..2096 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud204.t1	Gcaud204.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3964_length_2733_cov_4.457608 597..2096 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3964_length_2733_cov_4.457608:597..2096-
coding sequence from alignment at NODE_3964_length_2733_cov_4.457608:597..2096-

mRNA sequence

>Gcaud204.t1 ID=Gcaud204.t1|Name=Gcaud204.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=500bp
MAITIPFGAGVVAALIFLLFEFLVLPVMLHATSTLASFFLVRRAAKGKTI
HVRTINYPLWNEGLFNRDLSHALLFLIRILCISIPVYLETRFISHSAPIP
VSRLIRTAYVHKPQYEDLILSEAMKKFALNKSDFRILALPFEVFARCAEE
DEERWMNAKVANVVKANNFTEIRCVRGSEKAQYRFMERIPPFVEQSVLVP
WIDMENSAYANLVYRTNLTLKIQMKEGPYQKLRMESGLKQKVLDKFYKDT
PALLLKDVTVQDTGDMECFSWRGPLLEVLIRDKIRAHSFVCQNVTGLVVD
FYFTSIEGLTNESNTRILAREKDVVSKLVVVSTSFHFLGSLEFKDSVSIN
AGHVVRQFAYLPPATSFYLKYALRGLCYTPASNVTVTVPGREEAFSVELD
NVVIVVLALEVGLVLVLGLSLEVFARYRWNDMQRANTVEGLSYIWAKYIA
RWGGLVEKQSRITLRLCRRMFDGEERFVYHPELMGVEVLQGKDEEECSS*

spliced messenger RNA

>Gcaud204.t1 ID=Gcaud204.t1|Name=Gcaud204.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at NODE_3964_length_2733_cov_4.457608:597..2096- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTATCACAATACCTTTTGGAGCGGGTGTTGTAGCCGCTTTAATCTT
TTTGCTATTCGAATTTCTAGTGCTTCCCGTGATGCTGCATGCTACGTCTA
CCCTCGCCTCATTCTTCCTCGTCAGACGAGCTGCAAAGGGTAAGACCATT
CACGTAAGAACCATCAATTATCCGCTTTGGAATGAGGGCCTCTTCAATCG
TGATCTCTCACACGCGCTTCTTTTCCTCATTCGAATTCTATGCATCTCCA
TCCCGGTTTATCTGGAGACTCGTTTTATATCGCATTCCGCCCCGATCCCG
GTTTCGAGACTTATCCGGACCGCATATGTACACAAACCACAGTACGAGGA
CTTGATACTATCAGAGGCTATGAAAAAGTTTGCACTGAACAAATCAGATT
TTCGAATCCTCGCTTTGCCGTTTGAAGTGTTCGCTCGATGTGCGGAAGAG
GATGAGGAAAGATGGATGAATGCCAAAGTAGCAAATGTCGTAAAAGCAAA
CAACTTTACCGAGATTCGGTGTGTCCGCGGAAGCGAAAAGGCTCAATATC
GATTCATGGAACGAATTCCGCCTTTTGTTGAGCAATCAGTGTTGGTACCC
TGGATTGACATGGAGAATTCTGCTTACGCAAATCTGGTATATCGAACAAA
TCTCACACTGAAGATTCAGATGAAGGAAGGACCTTATCAAAAGCTTCGTA
TGGAGTCTGGTTTGAAGCAGAAGGTTTTGGATAAATTTTATAAGGATACG
CCGGCTTTGCTACTCAAAGACGTCACGGTGCAGGACACCGGAGACATGGA
ATGCTTTTCTTGGCGTGGTCCTCTCCTAGAAGTCCTAATACGCGATAAGA
TAAGGGCACATTCGTTTGTGTGTCAGAATGTTACGGGACTAGTTGTGGAT
TTCTACTTCACTTCTATAGAAGGTTTGACAAACGAAAGCAACACAAGAAT
CTTGGCTCGGGAAAAGGATGTTGTTTCGAAGCTGGTCGTCGTTTCAACCT
CGTTCCACTTTCTTGGAAGTCTTGAGTTCAAGGATAGCGTTTCGATAAAC
GCGGGACACGTGGTTCGACAGTTTGCATATCTACCGCCCGCAACTTCATT
TTATTTAAAGTACGCTCTCCGAGGTTTGTGCTACACGCCAGCCAGCAATG
TGACTGTCACAGTCCCAGGACGAGAAGAGGCTTTTTCCGTAGAGCTTGAT
AACGTTGTGATAGTCGTTCTTGCCCTGGAGGTGGGTTTGGTGCTTGTGTT
AGGGTTATCATTGGAGGTTTTTGCTCGATACAGATGGAATGACATGCAAA
GAGCAAACACAGTCGAGGGGCTGTCTTACATCTGGGCAAAGTACATAGCT
CGTTGGGGTGGTTTGGTAGAGAAGCAGTCTCGCATTACGTTACGGTTATG
CAGGCGGATGTTCGATGGGGAAGAACGCTTCGTGTACCACCCTGAGTTGA
TGGGAGTAGAGGTCCTTCAAGGCAAGGATGAGGAAGAGTGTTCAAGTTGA

protein sequence of Gcaud204.t1

>Gcaud204.t1 ID=Gcaud204.t1|Name=Gcaud204.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=500bp
MAITIPFGAGVVAALIFLLFEFLVLPVMLHATSTLASFFLVRRAAKGKTI
HVRTINYPLWNEGLFNRDLSHALLFLIRILCISIPVYLETRFISHSAPIP
VSRLIRTAYVHKPQYEDLILSEAMKKFALNKSDFRILALPFEVFARCAEE
DEERWMNAKVANVVKANNFTEIRCVRGSEKAQYRFMERIPPFVEQSVLVP
WIDMENSAYANLVYRTNLTLKIQMKEGPYQKLRMESGLKQKVLDKFYKDT
PALLLKDVTVQDTGDMECFSWRGPLLEVLIRDKIRAHSFVCQNVTGLVVD
FYFTSIEGLTNESNTRILAREKDVVSKLVVVSTSFHFLGSLEFKDSVSIN
AGHVVRQFAYLPPATSFYLKYALRGLCYTPASNVTVTVPGREEAFSVELD
NVVIVVLALEVGLVLVLGLSLEVFARYRWNDMQRANTVEGLSYIWAKYIA
RWGGLVEKQSRITLRLCRRMFDGEERFVYHPELMGVEVLQGKDEEECSS*

mRNA from alignment at NODE_3964_length_2733_cov_4.457608:597..2096-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud204.t1 ID=Gcaud204.t1|Name=Gcaud204.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at NODE_3964_length_2733_cov_4.457608:597..2096- (Gracilaria caudata M_176_S67 male)
ATGGCTATCACAATACCTTTTGGAGCGGGTGTTGTAGCCGCTTTAATCTT
TTTGCTATTCGAATTTCTAGTGCTTCCCGTGATGCTGCATGCTACGTCTA
CCCTCGCCTCATTCTTCCTCGTCAGACGAGCTGCAAAGGGTAAGACCATT
CACGTAAGAACCATCAATTATCCGCTTTGGAATGAGGGCCTCTTCAATCG
TGATCTCTCACACGCGCTTCTTTTCCTCATTCGAATTCTATGCATCTCCA
TCCCGGTTTATCTGGAGACTCGTTTTATATCGCATTCCGCCCCGATCCCG
GTTTCGAGACTTATCCGGACCGCATATGTACACAAACCACAGTACGAGGA
CTTGATACTATCAGAGGCTATGAAAAAGTTTGCACTGAACAAATCAGATT
TTCGAATCCTCGCTTTGCCGTTTGAAGTGTTCGCTCGATGTGCGGAAGAG
GATGAGGAAAGATGGATGAATGCCAAAGTAGCAAATGTCGTAAAAGCAAA
CAACTTTACCGAGATTCGGTGTGTCCGCGGAAGCGAAAAGGCTCAATATC
GATTCATGGAACGAATTCCGCCTTTTGTTGAGCAATCAGTGTTGGTACCC
TGGATTGACATGGAGAATTCTGCTTACGCAAATCTGGTATATCGAACAAA
TCTCACACTGAAGATTCAGATGAAGGAAGGACCTTATCAAAAGCTTCGTA
TGGAGTCTGGTTTGAAGCAGAAGGTTTTGGATAAATTTTATAAGGATACG
CCGGCTTTGCTACTCAAAGACGTCACGGTGCAGGACACCGGAGACATGGA
ATGCTTTTCTTGGCGTGGTCCTCTCCTAGAAGTCCTAATACGCGATAAGA
TAAGGGCACATTCGTTTGTGTGTCAGAATGTTACGGGACTAGTTGTGGAT
TTCTACTTCACTTCTATAGAAGGTTTGACAAACGAAAGCAACACAAGAAT
CTTGGCTCGGGAAAAGGATGTTGTTTCGAAGCTGGTCGTCGTTTCAACCT
CGTTCCACTTTCTTGGAAGTCTTGAGTTCAAGGATAGCGTTTCGATAAAC
GCGGGACACGTGGTTCGACAGTTTGCATATCTACCGCCCGCAACTTCATT
TTATTTAAAGTACGCTCTCCGAGGTTTGTGCTACACGCCAGCCAGCAATG
TGACTGTCACAGTCCCAGGACGAGAAGAGGCTTTTTCCGTAGAGCTTGAT
AACGTTGTGATAGTCGTTCTTGCCCTGGAGGTGGGTTTGGTGCTTGTGTT
AGGGTTATCATTGGAGGTTTTTGCTCGATACAGATGGAATGACATGCAAA
GAGCAAACACAGTCGAGGGGCTGTCTTACATCTGGGCAAAGTACATAGCT
CGTTGGGGTGGTTTGGTAGAGAAGCAGTCTCGCATTACGTTACGGTTATG
CAGGCGGATGTTCGATGGGGAAGAACGCTTCGTGTACCACCCTGAGTTGA
TGGGAGTAGAGGTCCTTCAAGGCAAGGATGAGGAAGAGTGTTCAAGTTGA

Coding sequence (CDS) from alignment at NODE_3964_length_2733_cov_4.457608:597..2096-

>Gcaud204.t1 ID=Gcaud204.t1|Name=Gcaud204.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1500bp|location=Sequence derived from alignment at NODE_3964_length_2733_cov_4.457608:597..2096- (Gracilaria caudata M_176_S67 male)
ATGGCTATCACAATACCTTTTGGAGCGGGTGTTGTAGCCGCTTTAATCTT
TTTGCTATTCGAATTTCTAGTGCTTCCCGTGATGCTGCATGCTACGTCTA
CCCTCGCCTCATTCTTCCTCGTCAGACGAGCTGCAAAGGGTAAGACCATT
CACGTAAGAACCATCAATTATCCGCTTTGGAATGAGGGCCTCTTCAATCG
TGATCTCTCACACGCGCTTCTTTTCCTCATTCGAATTCTATGCATCTCCA
TCCCGGTTTATCTGGAGACTCGTTTTATATCGCATTCCGCCCCGATCCCG
GTTTCGAGACTTATCCGGACCGCATATGTACACAAACCACAGTACGAGGA
CTTGATACTATCAGAGGCTATGAAAAAGTTTGCACTGAACAAATCAGATT
TTCGAATCCTCGCTTTGCCGTTTGAAGTGTTCGCTCGATGTGCGGAAGAG
GATGAGGAAAGATGGATGAATGCCAAAGTAGCAAATGTCGTAAAAGCAAA
CAACTTTACCGAGATTCGGTGTGTCCGCGGAAGCGAAAAGGCTCAATATC
GATTCATGGAACGAATTCCGCCTTTTGTTGAGCAATCAGTGTTGGTACCC
TGGATTGACATGGAGAATTCTGCTTACGCAAATCTGGTATATCGAACAAA
TCTCACACTGAAGATTCAGATGAAGGAAGGACCTTATCAAAAGCTTCGTA
TGGAGTCTGGTTTGAAGCAGAAGGTTTTGGATAAATTTTATAAGGATACG
CCGGCTTTGCTACTCAAAGACGTCACGGTGCAGGACACCGGAGACATGGA
ATGCTTTTCTTGGCGTGGTCCTCTCCTAGAAGTCCTAATACGCGATAAGA
TAAGGGCACATTCGTTTGTGTGTCAGAATGTTACGGGACTAGTTGTGGAT
TTCTACTTCACTTCTATAGAAGGTTTGACAAACGAAAGCAACACAAGAAT
CTTGGCTCGGGAAAAGGATGTTGTTTCGAAGCTGGTCGTCGTTTCAACCT
CGTTCCACTTTCTTGGAAGTCTTGAGTTCAAGGATAGCGTTTCGATAAAC
GCGGGACACGTGGTTCGACAGTTTGCATATCTACCGCCCGCAACTTCATT
TTATTTAAAGTACGCTCTCCGAGGTTTGTGCTACACGCCAGCCAGCAATG
TGACTGTCACAGTCCCAGGACGAGAAGAGGCTTTTTCCGTAGAGCTTGAT
AACGTTGTGATAGTCGTTCTTGCCCTGGAGGTGGGTTTGGTGCTTGTGTT
AGGGTTATCATTGGAGGTTTTTGCTCGATACAGATGGAATGACATGCAAA
GAGCAAACACAGTCGAGGGGCTGTCTTACATCTGGGCAAAGTACATAGCT
CGTTGGGGTGGTTTGGTAGAGAAGCAGTCTCGCATTACGTTACGGTTATG
CAGGCGGATGTTCGATGGGGAAGAACGCTTCGTGTACCACCCTGAGTTGA
TGGGAGTAGAGGTCCTTCAAGGCAAGGATGAGGAAGAGTGTTCAAGTTGA