Gcaud2039.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2039.t1
Unique NameGcaud2039.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1239_length_12250_cov_4.291307contigNODE_1239_length_12250_cov_4.291307:3696..4178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2039Gcaud2039Gracilaria caudata M_176_S67 malegeneNODE_1239_length_12250_cov_4.291307 3696..6017 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2039.t1.stop1Gcaud2039.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1239_length_12250_cov_4.291307 3696..3698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2039.t1.CDS1Gcaud2039.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1239_length_12250_cov_4.291307 3696..4178 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2039.t1.exon1Gcaud2039.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1239_length_12250_cov_4.291307 3696..4178 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2039.t1.start1Gcaud2039.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1239_length_12250_cov_4.291307 4176..4178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2039.t1Gcaud2039.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1239_length_12250_cov_4.291307 3696..4178 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2039.t1 ID=Gcaud2039.t1|Name=Gcaud2039.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=161bp
LDLALDTFWIPEAVARVLEDPRVQKTALECDDGLDVLSEDHGIQCESVQD
IAVSSLAIAGYGRVSDSQDLSSLRDLTKYWMRKEAKVISWEGIWPMKHTL
VEERLGEDTEEVAIAVLSAYATFCVREKVGDAARLKRINTAGVANDLEVL
SRRIVEVGAG*
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spliced messenger RNA

>Gcaud2039.t1 ID=Gcaud2039.t1|Name=Gcaud2039.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:3696..4178- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGACCTAGCTCTGGACACATTTTGGATTCCGGAGGCTGTTGCAAGAGT
ACTTGAAGACCCAAGGGTCCAGAAGACTGCTTTAGAGTGCGACGACGGGC
TTGATGTACTCTCTGAGGACCACGGAATCCAGTGCGAATCGGTTCAAGAC
ATTGCAGTGTCATCTCTGGCCATTGCTGGGTATGGTAGAGTCAGCGATTC
CCAAGACCTGTCGTCCTTAAGAGATCTCACCAAATACTGGATGCGGAAAG
AGGCAAAAGTAATTAGTTGGGAGGGCATATGGCCCATGAAGCATACTTTG
GTAGAAGAAAGGCTCGGCGAGGATACTGAAGAAGTAGCAATAGCGGTGTT
GTCTGCCTACGCCACATTTTGTGTCCGCGAGAAGGTTGGTGATGCTGCTC
GATTGAAAAGAATTAACACGGCTGGCGTAGCCAATGATCTTGAGGTTCTG
AGCAGGCGGATAGTAGAGGTCGGCGCTGGGTGA
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protein sequence of Gcaud2039.t1

>Gcaud2039.t1 ID=Gcaud2039.t1|Name=Gcaud2039.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=161bp
LDLALDTFWIPEAVARVLEDPRVQKTALECDDGLDVLSEDHGIQCESVQD
IAVSSLAIAGYGRVSDSQDLSSLRDLTKYWMRKEAKVISWEGIWPMKHTL
VEERLGEDTEEVAIAVLSAYATFCVREKVGDAARLKRINTAGVANDLEVL
SRRIVEVGAG*
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mRNA from alignment at NODE_1239_length_12250_cov_4.291307:3696..4178-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2039.t1 ID=Gcaud2039.t1|Name=Gcaud2039.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:3696..4178- (Gracilaria caudata M_176_S67 male)
CTGGACCTAGCTCTGGACACATTTTGGATTCCGGAGGCTGTTGCAAGAGT
ACTTGAAGACCCAAGGGTCCAGAAGACTGCTTTAGAGTGCGACGACGGGC
TTGATGTACTCTCTGAGGACCACGGAATCCAGTGCGAATCGGTTCAAGAC
ATTGCAGTGTCATCTCTGGCCATTGCTGGGTATGGTAGAGTCAGCGATTC
CCAAGACCTGTCGTCCTTAAGAGATCTCACCAAATACTGGATGCGGAAAG
AGGCAAAAGTAATTAGTTGGGAGGGCATATGGCCCATGAAGCATACTTTG
GTAGAAGAAAGGCTCGGCGAGGATACTGAAGAAGTAGCAATAGCGGTGTT
GTCTGCCTACGCCACATTTTGTGTCCGCGAGAAGGTTGGTGATGCTGCTC
GATTGAAAAGAATTAACACGGCTGGCGTAGCCAATGATCTTGAGGTTCTG
AGCAGGCGGATAGTAGAGGTCGGCGCTGGGTGA
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Coding sequence (CDS) from alignment at NODE_1239_length_12250_cov_4.291307:3696..4178-

>Gcaud2039.t1 ID=Gcaud2039.t1|Name=Gcaud2039.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=483bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:3696..4178- (Gracilaria caudata M_176_S67 male)
CTGGACCTAGCTCTGGACACATTTTGGATTCCGGAGGCTGTTGCAAGAGT
ACTTGAAGACCCAAGGGTCCAGAAGACTGCTTTAGAGTGCGACGACGGGC
TTGATGTACTCTCTGAGGACCACGGAATCCAGTGCGAATCGGTTCAAGAC
ATTGCAGTGTCATCTCTGGCCATTGCTGGGTATGGTAGAGTCAGCGATTC
CCAAGACCTGTCGTCCTTAAGAGATCTCACCAAATACTGGATGCGGAAAG
AGGCAAAAGTAATTAGTTGGGAGGGCATATGGCCCATGAAGCATACTTTG
GTAGAAGAAAGGCTCGGCGAGGATACTGAAGAAGTAGCAATAGCGGTGTT
GTCTGCCTACGCCACATTTTGTGTCCGCGAGAAGGTTGGTGATGCTGCTC
GATTGAAAAGAATTAACACGGCTGGCGTAGCCAATGATCTTGAGGTTCTG
AGCAGGCGGATAGTAGAGGTCGGCGCTGGGTGA
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