Gcaud2038.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2038.t1
Unique NameGcaud2038.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1239_length_12250_cov_4.291307contigNODE_1239_length_12250_cov_4.291307:6218..6902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2038Gcaud2038Gracilaria caudata M_176_S67 malegeneNODE_1239_length_12250_cov_4.291307 6218..6902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2038.t1Gcaud2038.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1239_length_12250_cov_4.291307 6218..6902 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2038.t1.stop1Gcaud2038.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1239_length_12250_cov_4.291307 6218..6220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2038.t1.CDS1Gcaud2038.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1239_length_12250_cov_4.291307 6218..6451 -
Gcaud2038.t1.CDS2Gcaud2038.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1239_length_12250_cov_4.291307 6573..6902 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2038.t1.exon1Gcaud2038.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1239_length_12250_cov_4.291307 6218..6451 -
Gcaud2038.t1.exon2Gcaud2038.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1239_length_12250_cov_4.291307 6573..6902 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2038.t1.intron1Gcaud2038.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1239_length_12250_cov_4.291307 6452..6572 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2038.t1.start1Gcaud2038.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1239_length_12250_cov_4.291307 6900..6902 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2038.t1 ID=Gcaud2038.t1|Name=Gcaud2038.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=188bp
MEEFTYESFSDWEALEQQSGDEAPEVAVSRPLSFVLVEDEQPTQRRHHAL
SSEAQKRTKRKFSSRRTEHFKKRRTHHPTPKRDLGRVRKSPAADKPLLSQ
TMPAHNAELDPKPLLTAYQAETTPNVRAVPDQELGPPSQVERLAWLKAPP
RSTDGPMWTPQKSILLGSHPLRDRYPEEAECLKIILL*
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spliced messenger RNA

>Gcaud2038.t1 ID=Gcaud2038.t1|Name=Gcaud2038.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=564bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:6218..6902- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAGTTTACGTACGAGTCTTTCAGCGATTGGGAAGCGCTTGAACA
GCAATCGGGTGATGAGGCCCCTGAGGTGGCGGTCTCTCGCCCCCTCTCTT
TCGTTCTCGTTGAAGACGAGCAACCCACTCAGAGGCGGCACCATGCGTTA
TCATCCGAAGCGCAGAAGCGTACGAAGCGCAAGTTTTCATCTCGGAGAAC
TGAACACTTTAAGAAGCGGCGCACACATCACCCGACGCCAAAACGCGACC
TCGGTCGTGTGCGCAAATCCCCGGCCGCTGACAAGCCGCTACTCTCCCAA
ACCATGCCCGCCCATAATGCCGAGTTAGACCCAAAGCCATTGCTCACAGC
GTATCAGGCGGAAACAACCCCCAATGTCCGAGCAGTTCCGGATCAAGAGC
TTGGGCCTCCGTCCCAGGTGGAGCGCTTGGCATGGCTGAAAGCTCCGCCC
CGAAGCACAGACGGACCGATGTGGACGCCTCAGAAGAGCATCTTGCTCGG
TTCGCATCCGTTACGGGACCGATATCCCGAGGAAGCAGAATGCCTCAAGA
TAATATTGCTTTGA
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protein sequence of Gcaud2038.t1

>Gcaud2038.t1 ID=Gcaud2038.t1|Name=Gcaud2038.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=188bp
MEEFTYESFSDWEALEQQSGDEAPEVAVSRPLSFVLVEDEQPTQRRHHAL
SSEAQKRTKRKFSSRRTEHFKKRRTHHPTPKRDLGRVRKSPAADKPLLSQ
TMPAHNAELDPKPLLTAYQAETTPNVRAVPDQELGPPSQVERLAWLKAPP
RSTDGPMWTPQKSILLGSHPLRDRYPEEAECLKIILL*
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mRNA from alignment at NODE_1239_length_12250_cov_4.291307:6218..6902-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2038.t1 ID=Gcaud2038.t1|Name=Gcaud2038.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=685bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:6218..6902- (Gracilaria caudata M_176_S67 male)
ATGGAAGAGTTTACGTACGAGTCTTTCAGCGATTGGGAAGCGCTTGAACA
GCAATCGGGTGATGAGGCCCCTGAGGTGGCGGTCTCTCGCCCCCTCTCTT
TCGTTCTCGTTGAAGACGAGCAACCCACTCAGAGGCGGCACCATGCGTTA
TCATCCGAAGCGCAGAAGCGTACGAAGCGCAAGTTTTCATCTCGGAGAAC
TGAACACTTTAAGAAGCGGCGCACACATCACCCGACGCCAAAACGCGACC
TCGGTCGTGTGCGCAAATCCCCGGCCGCTGACAAGCCGCTACTCTCCCAA
ACCATGCCCGCCCATAATGCCGAGTTAGACGTAAGTGCTCCAGTTTACGA
TCAAAACGATAGAATCCCTAGGCATAATCGGAGACATTCGAGCCCGCTTA
GAAGCACTACTGCAGCTGACCTCAGTCTAGAGACGGAACATGTTCTCGCA
GCCAAAGCCATTGCTCACAGCGTATCAGGCGGAAACAACCCCCAATGTCC
GAGCAGTTCCGGATCAAGAGCTTGGGCCTCCGTCCCAGGTGGAGCGCTTG
GCATGGCTGAAAGCTCCGCCCCGAAGCACAGACGGACCGATGTGGACGCC
TCAGAAGAGCATCTTGCTCGGTTCGCATCCGTTACGGGACCGATATCCCG
AGGAAGCAGAATGCCTCAAGATAATATTGCTTTGA
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Coding sequence (CDS) from alignment at NODE_1239_length_12250_cov_4.291307:6218..6902-

>Gcaud2038.t1 ID=Gcaud2038.t1|Name=Gcaud2038.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=564bp|location=Sequence derived from alignment at NODE_1239_length_12250_cov_4.291307:6218..6902- (Gracilaria caudata M_176_S67 male)
ATGGAAGAGTTTACGTACGAGTCTTTCAGCGATTGGGAAGCGCTTGAACA
GCAATCGGGTGATGAGGCCCCTGAGGTGGCGGTCTCTCGCCCCCTCTCTT
TCGTTCTCGTTGAAGACGAGCAACCCACTCAGAGGCGGCACCATGCGTTA
TCATCCGAAGCGCAGAAGCGTACGAAGCGCAAGTTTTCATCTCGGAGAAC
TGAACACTTTAAGAAGCGGCGCACACATCACCCGACGCCAAAACGCGACC
TCGGTCGTGTGCGCAAATCCCCGGCCGCTGACAAGCCGCTACTCTCCCAA
ACCATGCCCGCCCATAATGCCGAGTTAGACCCAAAGCCATTGCTCACAGC
GTATCAGGCGGAAACAACCCCCAATGTCCGAGCAGTTCCGGATCAAGAGC
TTGGGCCTCCGTCCCAGGTGGAGCGCTTGGCATGGCTGAAAGCTCCGCCC
CGAAGCACAGACGGACCGATGTGGACGCCTCAGAAGAGCATCTTGCTCGG
TTCGCATCCGTTACGGGACCGATATCCCGAGGAAGCAGAATGCCTCAAGA
TAATATTGCTTTGA
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