Gcaud2033.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2033.t1
Unique NameGcaud2033.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4616_length_2125_cov_2.936578contigNODE_4616_length_2125_cov_2.936578:874..1780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7260.FBpp0252403
Preferred namePRKAB2
PFAMsAMPK1_CBM,AMPKBI
Max annot lvl33208|Metazoa
KEGG koko:K07199
KEGG Pathwayko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004679,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0005952,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0007049,GO:0007050,GO:0007154,GO:0007163,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009889,GO:0009893,GO:0009987,GO:0010468,GO:0010565,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016236,GO:0016301,GO:0016310,GO:0016324,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022607,GO:0023052,GO:0030011,GO:0031323,GO:0031326,GO:0031588,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0035088,GO:0035090,GO:0035878,GO:0036211,GO:0042304,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045786,GO:0046890,GO:0048518,GO:0048519,GO:0048523,GO:0048736,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051259,GO:0051291,GO:0051716,GO:0051726,GO:0060173,GO:0060249,GO:0060255,GO:0061245,GO:0061695,GO:0061919,GO:0062012,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070050,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0098590,GO:0140096,GO:1901564,GO:1902494,GO:1902911,GO:1990234
Evalue3.32e-09
EggNOG OGsKOG1616@1|root,KOG1616@2759|Eukaryota,38HM7@33154|Opisthokonta,3BEI5@33208|Metazoa,3CRZR@33213|Bilateria,41VW4@6656|Arthropoda,3SJXI@50557|Insecta,44YCB@7147|Diptera,45QFB@7214|Drosophilidae
Description5'-AMP-activated protein kinase beta subunit, interation domain
COG categoryG
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2033Gcaud2033Gracilaria caudata M_176_S67 malegeneNODE_4616_length_2125_cov_2.936578 874..1780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2033.t1Gcaud2033.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4616_length_2125_cov_2.936578 874..1780 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2033.t1.stop1Gcaud2033.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4616_length_2125_cov_2.936578 874..876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2033.t1.CDS1Gcaud2033.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4616_length_2125_cov_2.936578 874..879 -
Gcaud2033.t1.CDS2Gcaud2033.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_4616_length_2125_cov_2.936578 1131..1369 -
Gcaud2033.t1.CDS3Gcaud2033.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_4616_length_2125_cov_2.936578 1495..1780 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2033.t1.exon1Gcaud2033.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4616_length_2125_cov_2.936578 874..879 -
Gcaud2033.t1.exon2Gcaud2033.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_4616_length_2125_cov_2.936578 1131..1369 -
Gcaud2033.t1.exon3Gcaud2033.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_4616_length_2125_cov_2.936578 1495..1780 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2033.t1.intron1Gcaud2033.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_4616_length_2125_cov_2.936578 880..1130 -
Gcaud2033.t1.intron2Gcaud2033.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_4616_length_2125_cov_2.936578 1370..1494 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2033.t1.start1Gcaud2033.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4616_length_2125_cov_2.936578 1778..1780 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2033.t1 ID=Gcaud2033.t1|Name=Gcaud2033.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=177bp
MKAAPPAPEPDRVVEPPMAPPERFDDDIPAPAMPTAGASARPKSPVVNGT
FEKGDSDDEEVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWS
VVTPVPAGTHEFKFVVDGEWKHSTRHPTVGAEEETMNNIRVIRGPPKNKQ
NTARLSEQRNKQAGMSAPKHKRCCIS*
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spliced messenger RNA

>Gcaud2033.t1 ID=Gcaud2033.t1|Name=Gcaud2033.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=531bp|location=Sequence derived from alignment at NODE_4616_length_2125_cov_2.936578:874..1780- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCGGCGCCGCCCGCGCCCGAGCCGGATCGCGTGGTGGAACCGCC
CATGGCGCCGCCCGAGCGCTTTGACGACGACATTCCGGCGCCGGCTATGC
CCACCGCCGGCGCGTCCGCGCGGCCGAAGAGCCCCGTGGTGAACGGCACG
TTCGAGAAGGGCGATTCGGACGACGAGGAGGTGATGGTCAAGACCGAGTT
TGTGTGGGCCGATGGCGCCGAACACGATGTGAAATTGTCGGGCGCGTGGA
ATGGATGGATGCCTGTGCAGATGTATCACGAAGGAGGCGGCATGTGGTCG
GTGGTGACGCCGGTCCCTGCGGGCACGCACGAGTTCAAGTTTGTTGTGGA
CGGTGAATGGAAGCACAGCACGCGTCATCCCACCGTGGGCGCTGAGGAGG
AGACGATGAACAACATCCGCGTGATTCGAGGCCCGCCCAAGAACAAACAG
AATACGGCGCGTCTTTCCGAGCAGCGCAACAAACAGGCTGGAATGTCCGC
ACCAAAACACAAGAGGTGCTGCATCTCATGA
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protein sequence of Gcaud2033.t1

>Gcaud2033.t1 ID=Gcaud2033.t1|Name=Gcaud2033.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=177bp
MKAAPPAPEPDRVVEPPMAPPERFDDDIPAPAMPTAGASARPKSPVVNGT
FEKGDSDDEEVMVKTEFVWADGAEHDVKLSGAWNGWMPVQMYHEGGGMWS
VVTPVPAGTHEFKFVVDGEWKHSTRHPTVGAEEETMNNIRVIRGPPKNKQ
NTARLSEQRNKQAGMSAPKHKRCCIS*
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mRNA from alignment at NODE_4616_length_2125_cov_2.936578:874..1780-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2033.t1 ID=Gcaud2033.t1|Name=Gcaud2033.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=907bp|location=Sequence derived from alignment at NODE_4616_length_2125_cov_2.936578:874..1780- (Gracilaria caudata M_176_S67 male)
ATGAAGGCGGCGCCGCCCGCGCCCGAGCCGGATCGCGTGGTGGAACCGCC
CATGGCGCCGCCCGAGCGCTTTGACGACGACATTCCGGCGCCGGCTATGC
CCACCGCCGGCGCGTCCGCGCGGCCGAAGAGCCCCGTGGTGAACGGCACG
TTCGAGAAGGGCGATTCGGACGACGAGGAGGTGATGGTCAAGACCGAGTT
TGTGTGGGCCGATGGCGCCGAACACGATGTGAAATTGTCGGGCGCGTGGA
ATGGATGGATGCCTGTGCAGATGTATCACGAAGGAGGTACGTGTGTTTTT
GTTTTGTTTACCATTGCGCGCGTTGTTGTTGTTTGTGCGTGCGTGCTGGC
GCGGCGGCTGACGTTTTGTTTTCTTGTGCTGTTTGCGCGCGTGTGTGTGC
TCACTTTGTAGGCGGCATGTGGTCGGTGGTGACGCCGGTCCCTGCGGGCA
CGCACGAGTTCAAGTTTGTTGTGGACGGTGAATGGAAGCACAGCACGCGT
CATCCCACCGTGGGCGCTGAGGAGGAGACGATGAACAACATCCGCGTGAT
TCGAGGCCCGCCCAAGAACAAACAGAATACGGCGCGTCTTTCCGAGCAGC
GCAACAAACAGGCTGGAATGTCCGCACCAAAACACAAGAGGTGCTGCATC
GTAAGTTAATTGTTCTACTACTACTGCATTAAGGTTGCGTGCCTGCTGTT
CTCCGCGCCTGCTTCCCTTCTGCGTGCTGTACGCTGCCGTGTTGGTCGCT
GGCTTTCTCCCCCTTCCCCCGCCCCGCATGTGGTGATCTGTTTCGTGTGT
GTTGCGCTGTGCAGTTTGGTTAACCGCTTGAGCCGTGTGTGTCTCGTTTT
GTCCCCTCCTTTTGTGTGTGTCACTGTCTGTTGTTGTTCGTTTTCCGTCA
GTCATGA
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Coding sequence (CDS) from alignment at NODE_4616_length_2125_cov_2.936578:874..1780-

>Gcaud2033.t1 ID=Gcaud2033.t1|Name=Gcaud2033.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=531bp|location=Sequence derived from alignment at NODE_4616_length_2125_cov_2.936578:874..1780- (Gracilaria caudata M_176_S67 male)
ATGAAGGCGGCGCCGCCCGCGCCCGAGCCGGATCGCGTGGTGGAACCGCC
CATGGCGCCGCCCGAGCGCTTTGACGACGACATTCCGGCGCCGGCTATGC
CCACCGCCGGCGCGTCCGCGCGGCCGAAGAGCCCCGTGGTGAACGGCACG
TTCGAGAAGGGCGATTCGGACGACGAGGAGGTGATGGTCAAGACCGAGTT
TGTGTGGGCCGATGGCGCCGAACACGATGTGAAATTGTCGGGCGCGTGGA
ATGGATGGATGCCTGTGCAGATGTATCACGAAGGAGGCGGCATGTGGTCG
GTGGTGACGCCGGTCCCTGCGGGCACGCACGAGTTCAAGTTTGTTGTGGA
CGGTGAATGGAAGCACAGCACGCGTCATCCCACCGTGGGCGCTGAGGAGG
AGACGATGAACAACATCCGCGTGATTCGAGGCCCGCCCAAGAACAAACAG
AATACGGCGCGTCTTTCCGAGCAGCGCAACAAACAGGCTGGAATGTCCGC
ACCAAAACACAAGAGGTGCTGCATCTCATGA
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