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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2031.t1.start1 | Gcaud2031.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_538_length_22627_cov_4.365637 20735..20737 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2031.t1.stop1 | Gcaud2031.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_538_length_22627_cov_4.365637 21681..21683 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2031.t1 ID=Gcaud2031.t1|Name=Gcaud2031.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=264bp
MEKESVNATTDDNFDNDILRNFISSQLAKFEVRELCKGRLAVKAKTRDKR
WKEEGKAMKEALDQEHMHALVECLPQGNRCPQPPREAFLTLANEAAAASE
DPMTTAQKAFLLEEYAIQLFAELGDTPDSRTCETASPWALACSGIKRGNL
NATERETLHSQRIASQLHSILERLSTGYWGSEQVSDEVGRSEIQAQPSGR
KRKRRGSPMPQSSNNGDKQLSETEGEKTARKTAVKKVGRRAKRKQESGYY
SSDNYKSEESCSD* back to topspliced messenger RNA >Gcaud2031.t1 ID=Gcaud2031.t1|Name=Gcaud2031.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=792bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:20735..21683+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGAAAGAAAGTGTGAATGCTACGACAGACGACAACTTCGATAACGA
CATACTTCGCAACTTTATTTCGAGTCAGTTAGCAAAGTTTGAGGTAAGAG
AGTTGTGTAAAGGACGTCTTGCAGTGAAGGCCAAAACTCGAGATAAACGT
TGGAAGGAAGAAGGCAAGGCAATGAAAGAAGCACTTGACCAAGAGCATAT
GCATGCCCTTGTAGAATGTCTGCCTCAAGGGAATCGCTGCCCGCAGCCAC
CTAGAGAAGCTTTTCTGACTCTGGCGAACGAAGCAGCAGCAGCATCCGAA
GATCCAATGACAACCGCACAAAAAGCATTCCTTCTCGAGGAGTACGCCAT
TCAGCTGTTCGCAGAACTTGGGGATACGCCTGATAGCCGCACGTGCGAAA
CTGCAAGCCCATGGGCCCTTGCTTGCTCGGGAATCAAACGCGGCAATCTG
AATGCCACGGAGAGAGAAACACTTCATTCGCAACGAATTGCTTCGCAACT
GCATTCGATTCTGGAACGGCTGTCGACTGGGTATTGGGGAAGCGAACAAG
TTAGCGATGAGGTGGGACGGAGTGAAATACAAGCTCAACCAAGTGGTCGG
AAGCGTAAACGAAGGGGGTCGCCCATGCCACAGTCGTCGAACAATGGTGA
TAAACAACTTTCGGAGACAGAGGGTGAGAAGACAGCAAGGAAAACGGCTG
TGAAGAAGGTTGGTAGACGTGCGAAGCGAAAACAAGAAAGTGGGTACTAC
TCGAGTGACAACTACAAGTCGGAAGAATCTTGCTCAGATTAA back to topprotein sequence of Gcaud2031.t1 >Gcaud2031.t1 ID=Gcaud2031.t1|Name=Gcaud2031.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=264bp
MEKESVNATTDDNFDNDILRNFISSQLAKFEVRELCKGRLAVKAKTRDKR
WKEEGKAMKEALDQEHMHALVECLPQGNRCPQPPREAFLTLANEAAAASE
DPMTTAQKAFLLEEYAIQLFAELGDTPDSRTCETASPWALACSGIKRGNL
NATERETLHSQRIASQLHSILERLSTGYWGSEQVSDEVGRSEIQAQPSGR
KRKRRGSPMPQSSNNGDKQLSETEGEKTARKTAVKKVGRRAKRKQESGYY
SSDNYKSEESCSD* back to topmRNA from alignment at NODE_538_length_22627_cov_4.365637:20735..21683+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2031.t1 ID=Gcaud2031.t1|Name=Gcaud2031.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=949bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:20735..21683+ (Gracilaria caudata M_176_S67 male)
ATGGAGAAAGAAAGTGTGAATGCTACGACAGACGACAACTTCGATAACGA
CATACTTCGCAACTTTATTTCGAGTCAGTTAGCAAAGTTTGAGGTAAGAG
AGTTGTGTAAAGGACGTCTTGCAGTGAAGGCCAAAACTCGAGATAAACGT
TGGAAGGAAGAAGGCAAGGCAATGAAAGAAGCACTTGACCAAGAGCATAT
GCATGCCCTTGTAGAATGTCTGCCTCAAGGTAAGCGAGAGAAAAGCATAC
CCGGACGATAATTTAATGACATACTGACTTGAGTGCCCGTTCTCTTTCAT
TACAATATCAAAGGGAATCGCTGCCCGCAGCCACCTAGAGAAGCTTTTCT
GACTCTGGCGAACGAAGCAGCAGCAGCATCCGAAGATCCAATGACAACCG
CACAAAAAGGTAAGTGAAGAGAGCTCTCCTGCTTGTTGCAAAACACGTTC
ACTGACTGGGAGCAAAAAGTACGGTGGTACAGCATTCCTTCTCGAGGAGT
ACGCCATTCAGCTGTTCGCAGAACTTGGGGATACGCCTGATAGCCGCACG
TGCGAAACTGCAAGCCCATGGGCCCTTGCTTGCTCGGGAATCAAACGCGG
CAATCTGAATGCCACGGAGAGAGAAACACTTCATTCGCAACGAATTGCTT
CGCAACTGCATTCGATTCTGGAACGGCTGTCGACTGGGTATTGGGGAAGC
GAACAAGTTAGCGATGAGGTGGGACGGAGTGAAATACAAGCTCAACCAAG
TGGTCGGAAGCGTAAACGAAGGGGGTCGCCCATGCCACAGTCGTCGAACA
ATGGTGATAAACAACTTTCGGAGACAGAGGGTGAGAAGACAGCAAGGAAA
ACGGCTGTGAAGAAGGTTGGTAGACGTGCGAAGCGAAAACAAGAAAGTGG
GTACTACTCGAGTGACAACTACAAGTCGGAAGAATCTTGCTCAGATTAA back to topCoding sequence (CDS) from alignment at NODE_538_length_22627_cov_4.365637:20735..21683+ >Gcaud2031.t1 ID=Gcaud2031.t1|Name=Gcaud2031.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=792bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:20735..21683+ (Gracilaria caudata M_176_S67 male)
ATGGAGAAAGAAAGTGTGAATGCTACGACAGACGACAACTTCGATAACGA
CATACTTCGCAACTTTATTTCGAGTCAGTTAGCAAAGTTTGAGGTAAGAG
AGTTGTGTAAAGGACGTCTTGCAGTGAAGGCCAAAACTCGAGATAAACGT
TGGAAGGAAGAAGGCAAGGCAATGAAAGAAGCACTTGACCAAGAGCATAT
GCATGCCCTTGTAGAATGTCTGCCTCAAGGGAATCGCTGCCCGCAGCCAC
CTAGAGAAGCTTTTCTGACTCTGGCGAACGAAGCAGCAGCAGCATCCGAA
GATCCAATGACAACCGCACAAAAAGCATTCCTTCTCGAGGAGTACGCCAT
TCAGCTGTTCGCAGAACTTGGGGATACGCCTGATAGCCGCACGTGCGAAA
CTGCAAGCCCATGGGCCCTTGCTTGCTCGGGAATCAAACGCGGCAATCTG
AATGCCACGGAGAGAGAAACACTTCATTCGCAACGAATTGCTTCGCAACT
GCATTCGATTCTGGAACGGCTGTCGACTGGGTATTGGGGAAGCGAACAAG
TTAGCGATGAGGTGGGACGGAGTGAAATACAAGCTCAACCAAGTGGTCGG
AAGCGTAAACGAAGGGGGTCGCCCATGCCACAGTCGTCGAACAATGGTGA
TAAACAACTTTCGGAGACAGAGGGTGAGAAGACAGCAAGGAAAACGGCTG
TGAAGAAGGTTGGTAGACGTGCGAAGCGAAAACAAGAAAGTGGGTACTAC
TCGAGTGACAACTACAAGTCGGAAGAATCTTGCTCAGATTAA back to top
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