Gcaud2031.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2031.t1
Unique Name	Gcaud2031.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	264

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_538_length_22627_cov_4.365637	contig	NODE_538_length_22627_cov_4.365637:20735..21683 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2031	Gcaud2031	Gracilaria caudata M_176_S67 male	gene	NODE_538_length_22627_cov_4.365637 20735..21683 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2031.t1	Gcaud2031.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_538_length_22627_cov_4.365637 20735..21683 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2031.t1.start1	Gcaud2031.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_538_length_22627_cov_4.365637 20735..20737 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2031.t1.CDS1	Gcaud2031.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_538_length_22627_cov_4.365637 20735..20963 +
Gcaud2031.t1.CDS2	Gcaud2031.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_538_length_22627_cov_4.365637 21048..21143 +
Gcaud2031.t1.CDS3	Gcaud2031.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_538_length_22627_cov_4.365637 21217..21683 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2031.t1.exon1	Gcaud2031.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_538_length_22627_cov_4.365637 20735..20963 +
Gcaud2031.t1.exon2	Gcaud2031.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_538_length_22627_cov_4.365637 21048..21143 +
Gcaud2031.t1.exon3	Gcaud2031.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_538_length_22627_cov_4.365637 21217..21683 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2031.t1.intron1	Gcaud2031.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_538_length_22627_cov_4.365637 20964..21047 +
Gcaud2031.t1.intron2	Gcaud2031.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_538_length_22627_cov_4.365637 21144..21216 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2031.t1.stop1	Gcaud2031.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_538_length_22627_cov_4.365637 21681..21683 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_538_length_22627_cov_4.365637:20735..21683+
coding sequence from alignment at NODE_538_length_22627_cov_4.365637:20735..21683+

mRNA sequence

>Gcaud2031.t1 ID=Gcaud2031.t1|Name=Gcaud2031.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=264bp
MEKESVNATTDDNFDNDILRNFISSQLAKFEVRELCKGRLAVKAKTRDKR
WKEEGKAMKEALDQEHMHALVECLPQGNRCPQPPREAFLTLANEAAAASE
DPMTTAQKAFLLEEYAIQLFAELGDTPDSRTCETASPWALACSGIKRGNL
NATERETLHSQRIASQLHSILERLSTGYWGSEQVSDEVGRSEIQAQPSGR
KRKRRGSPMPQSSNNGDKQLSETEGEKTARKTAVKKVGRRAKRKQESGYY
SSDNYKSEESCSD*

spliced messenger RNA

>Gcaud2031.t1 ID=Gcaud2031.t1|Name=Gcaud2031.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=792bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:20735..21683+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAAGAAAGTGTGAATGCTACGACAGACGACAACTTCGATAACGA
CATACTTCGCAACTTTATTTCGAGTCAGTTAGCAAAGTTTGAGGTAAGAG
AGTTGTGTAAAGGACGTCTTGCAGTGAAGGCCAAAACTCGAGATAAACGT
TGGAAGGAAGAAGGCAAGGCAATGAAAGAAGCACTTGACCAAGAGCATAT
GCATGCCCTTGTAGAATGTCTGCCTCAAGGGAATCGCTGCCCGCAGCCAC
CTAGAGAAGCTTTTCTGACTCTGGCGAACGAAGCAGCAGCAGCATCCGAA
GATCCAATGACAACCGCACAAAAAGCATTCCTTCTCGAGGAGTACGCCAT
TCAGCTGTTCGCAGAACTTGGGGATACGCCTGATAGCCGCACGTGCGAAA
CTGCAAGCCCATGGGCCCTTGCTTGCTCGGGAATCAAACGCGGCAATCTG
AATGCCACGGAGAGAGAAACACTTCATTCGCAACGAATTGCTTCGCAACT
GCATTCGATTCTGGAACGGCTGTCGACTGGGTATTGGGGAAGCGAACAAG
TTAGCGATGAGGTGGGACGGAGTGAAATACAAGCTCAACCAAGTGGTCGG
AAGCGTAAACGAAGGGGGTCGCCCATGCCACAGTCGTCGAACAATGGTGA
TAAACAACTTTCGGAGACAGAGGGTGAGAAGACAGCAAGGAAAACGGCTG
TGAAGAAGGTTGGTAGACGTGCGAAGCGAAAACAAGAAAGTGGGTACTAC
TCGAGTGACAACTACAAGTCGGAAGAATCTTGCTCAGATTAA

protein sequence of Gcaud2031.t1

>Gcaud2031.t1 ID=Gcaud2031.t1|Name=Gcaud2031.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=264bp
MEKESVNATTDDNFDNDILRNFISSQLAKFEVRELCKGRLAVKAKTRDKR
WKEEGKAMKEALDQEHMHALVECLPQGNRCPQPPREAFLTLANEAAAASE
DPMTTAQKAFLLEEYAIQLFAELGDTPDSRTCETASPWALACSGIKRGNL
NATERETLHSQRIASQLHSILERLSTGYWGSEQVSDEVGRSEIQAQPSGR
KRKRRGSPMPQSSNNGDKQLSETEGEKTARKTAVKKVGRRAKRKQESGYY
SSDNYKSEESCSD*

mRNA from alignment at NODE_538_length_22627_cov_4.365637:20735..21683+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2031.t1 ID=Gcaud2031.t1|Name=Gcaud2031.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=949bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:20735..21683+ (Gracilaria caudata M_176_S67 male)
ATGGAGAAAGAAAGTGTGAATGCTACGACAGACGACAACTTCGATAACGA
CATACTTCGCAACTTTATTTCGAGTCAGTTAGCAAAGTTTGAGGTAAGAG
AGTTGTGTAAAGGACGTCTTGCAGTGAAGGCCAAAACTCGAGATAAACGT
TGGAAGGAAGAAGGCAAGGCAATGAAAGAAGCACTTGACCAAGAGCATAT
GCATGCCCTTGTAGAATGTCTGCCTCAAGGTAAGCGAGAGAAAAGCATAC
CCGGACGATAATTTAATGACATACTGACTTGAGTGCCCGTTCTCTTTCAT
TACAATATCAAAGGGAATCGCTGCCCGCAGCCACCTAGAGAAGCTTTTCT
GACTCTGGCGAACGAAGCAGCAGCAGCATCCGAAGATCCAATGACAACCG
CACAAAAAGGTAAGTGAAGAGAGCTCTCCTGCTTGTTGCAAAACACGTTC
ACTGACTGGGAGCAAAAAGTACGGTGGTACAGCATTCCTTCTCGAGGAGT
ACGCCATTCAGCTGTTCGCAGAACTTGGGGATACGCCTGATAGCCGCACG
TGCGAAACTGCAAGCCCATGGGCCCTTGCTTGCTCGGGAATCAAACGCGG
CAATCTGAATGCCACGGAGAGAGAAACACTTCATTCGCAACGAATTGCTT
CGCAACTGCATTCGATTCTGGAACGGCTGTCGACTGGGTATTGGGGAAGC
GAACAAGTTAGCGATGAGGTGGGACGGAGTGAAATACAAGCTCAACCAAG
TGGTCGGAAGCGTAAACGAAGGGGGTCGCCCATGCCACAGTCGTCGAACA
ATGGTGATAAACAACTTTCGGAGACAGAGGGTGAGAAGACAGCAAGGAAA
ACGGCTGTGAAGAAGGTTGGTAGACGTGCGAAGCGAAAACAAGAAAGTGG
GTACTACTCGAGTGACAACTACAAGTCGGAAGAATCTTGCTCAGATTAA

Coding sequence (CDS) from alignment at NODE_538_length_22627_cov_4.365637:20735..21683+

>Gcaud2031.t1 ID=Gcaud2031.t1|Name=Gcaud2031.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=792bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:20735..21683+ (Gracilaria caudata M_176_S67 male)
ATGGAGAAAGAAAGTGTGAATGCTACGACAGACGACAACTTCGATAACGA
CATACTTCGCAACTTTATTTCGAGTCAGTTAGCAAAGTTTGAGGTAAGAG
AGTTGTGTAAAGGACGTCTTGCAGTGAAGGCCAAAACTCGAGATAAACGT
TGGAAGGAAGAAGGCAAGGCAATGAAAGAAGCACTTGACCAAGAGCATAT
GCATGCCCTTGTAGAATGTCTGCCTCAAGGGAATCGCTGCCCGCAGCCAC
CTAGAGAAGCTTTTCTGACTCTGGCGAACGAAGCAGCAGCAGCATCCGAA
GATCCAATGACAACCGCACAAAAAGCATTCCTTCTCGAGGAGTACGCCAT
TCAGCTGTTCGCAGAACTTGGGGATACGCCTGATAGCCGCACGTGCGAAA
CTGCAAGCCCATGGGCCCTTGCTTGCTCGGGAATCAAACGCGGCAATCTG
AATGCCACGGAGAGAGAAACACTTCATTCGCAACGAATTGCTTCGCAACT
GCATTCGATTCTGGAACGGCTGTCGACTGGGTATTGGGGAAGCGAACAAG
TTAGCGATGAGGTGGGACGGAGTGAAATACAAGCTCAACCAAGTGGTCGG
AAGCGTAAACGAAGGGGGTCGCCCATGCCACAGTCGTCGAACAATGGTGA
TAAACAACTTTCGGAGACAGAGGGTGAGAAGACAGCAAGGAAAACGGCTG
TGAAGAAGGTTGGTAGACGTGCGAAGCGAAAACAAGAAAGTGGGTACTAC
TCGAGTGACAACTACAAGTCGGAAGAATCTTGCTCAGATTAA