Gcaud2030.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2030.t1
Unique Name	Gcaud2030.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	632

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_538_length_22627_cov_4.365637	contig	NODE_538_length_22627_cov_4.365637:18012..19907 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_024348-tr
Preferred name	SRP68
PFAMs	SRP68
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K03107
KEGG TC	3.A.5.9
KEGG Pathway	ko03060,map03060
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0005047,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005786,GO:0005829,GO:0005840,GO:0005912,GO:0005924,GO:0005925,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008312,GO:0012505,GO:0015031,GO:0015833,GO:0019904,GO:0030054,GO:0030055,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042221,GO:0042493,GO:0042886,GO:0043021,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048500,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070161,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:1901363,GO:1990904
Evalue	1.75e-66
EggNOG OGs	KOG2460@1\|root,KOG2460@2759\|Eukaryota,38E9N@33154\|Opisthokonta,3BE4U@33208\|Metazoa,3CVHY@33213\|Bilateria
Description	signal recognition particle binding
COG category	U
BRITE	ko00000,ko00001,ko02044

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2030	Gcaud2030	Gracilaria caudata M_176_S67 male	gene	NODE_538_length_22627_cov_4.365637 18012..19907 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2030.t1.start1	Gcaud2030.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_538_length_22627_cov_4.365637 18012..18014 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2030.t1.CDS1	Gcaud2030.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_538_length_22627_cov_4.365637 18012..19907 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2030.t1.exon1	Gcaud2030.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_538_length_22627_cov_4.365637 18012..19907 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2030.t1.stop1	Gcaud2030.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_538_length_22627_cov_4.365637 19905..19907 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2030.t1	Gcaud2030.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_538_length_22627_cov_4.365637 18012..19907 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_538_length_22627_cov_4.365637:18012..19907+
coding sequence from alignment at NODE_538_length_22627_cov_4.365637:18012..19907+

mRNA sequence

>Gcaud2030.t1 ID=Gcaud2030.t1|Name=Gcaud2030.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=632bp
LTERNSRQHAAFFADDGRGSGDAINGDEEMVAVVSQAESPVADAQPASEN
GVKPSAEKVALPILSDITDAQNAHGLKHADYLRYRRYCTRRLSRLRSATN
ASNKHPSHHHRYHANPVTIEKIQHNQRALQIPLVLAEREWAFAMDVKREQ
PAGPHRARRTIIAKLSRAVHHAQHLAALCHDVADESTVFEAEAYWKSMIA
ALALEREQWPSALHAYQNVHKIYTGMAGLRAGTAAAPLFEKRLEDVDQAI
RFCNYNLSRSSGDADEALLQSLRDDANQSQDILSEKIEAALTEARKRAAV
SFGEVTWCGITVPLRAERVREAVLMASEESKVFSQKSAAVEAYDKLFMKY
NDAVKVVADELSQFRSSSAAADDRITELEYLVAYLTFNRLQHTISRNLLL
VDSYRNKRASKPEDFVRLFDNLIANMNDILALKGVDNDAQIANDAEGRRT
LFRAHRCYHLAQCYLAAHMQSEAAALFDRVAVHAKALTGKYAEEAQRVVK
ESKGLKCRAVAEAYIKEHQLASSMRDMKLSEKSSYVGTKRMIDHLDSFEC
FAPTPDNNRVICDMPPSLEAIPCKPVLFDLAIDGIRFPREVSNAEPQEAE
QAQDTSEQQQAPLSTFSATTTRIGRWWSGKG*

spliced messenger RNA

>Gcaud2030.t1 ID=Gcaud2030.t1|Name=Gcaud2030.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1896bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:18012..19907+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGACTGAGCGGAACTCTCGCCAGCATGCGGCCTTCTTTGCAGATGACGG
TCGCGGCTCTGGCGATGCGATCAACGGCGACGAGGAGATGGTGGCGGTGG
TTTCTCAAGCCGAGTCGCCCGTCGCCGACGCGCAGCCCGCATCCGAGAAT
GGCGTGAAGCCGTCTGCGGAGAAGGTCGCGCTACCGATTCTCTCCGATAT
CACTGACGCCCAGAACGCTCACGGCCTCAAGCATGCCGACTACCTGCGCT
ATCGTCGGTACTGCACGCGCCGCCTCTCTCGTCTCCGTTCGGCAACGAAT
GCTTCGAATAAACACCCCTCGCACCACCATCGATACCATGCCAATCCCGT
CACCATCGAGAAGATTCAGCACAACCAACGCGCGCTTCAGATCCCGCTCG
TGCTGGCAGAGAGGGAGTGGGCGTTTGCGATGGACGTGAAGAGAGAACAG
CCTGCTGGCCCCCATCGAGCGCGCCGTACCATCATTGCCAAGCTCTCTCG
CGCTGTGCATCATGCGCAACATCTCGCCGCGCTTTGTCACGACGTGGCTG
ACGAGTCCACCGTCTTCGAGGCGGAGGCATATTGGAAGTCTATGATCGCC
GCGCTTGCTCTGGAACGGGAGCAGTGGCCATCTGCTCTGCATGCTTACCA
GAACGTCCACAAGATCTACACGGGTATGGCTGGCTTGCGTGCCGGAACGG
CAGCTGCGCCGTTGTTTGAGAAGCGCCTGGAAGACGTGGATCAGGCCATT
CGCTTTTGTAACTACAATCTGTCCAGATCCTCTGGAGACGCGGATGAGGC
TTTGTTGCAAAGCCTGCGCGATGATGCCAATCAATCGCAGGACATTCTTT
CGGAGAAGATCGAAGCGGCGTTGACAGAGGCTCGGAAACGCGCCGCCGTT
TCGTTTGGTGAGGTTACGTGGTGTGGAATTACTGTGCCGTTGCGCGCGGA
GCGTGTGCGGGAAGCAGTACTTATGGCGTCGGAGGAAAGCAAGGTGTTTT
CACAGAAGTCGGCTGCTGTGGAAGCCTACGATAAGCTGTTCATGAAGTAT
AATGATGCTGTCAAAGTCGTCGCAGATGAGCTTTCTCAGTTTCGCTCCTC
TTCTGCAGCTGCTGATGATCGTATCACGGAGCTTGAATATCTTGTTGCCT
ATCTCACGTTTAACCGTTTGCAACACACTATATCTCGAAATCTGCTGCTG
GTTGATTCGTATCGCAACAAGCGGGCGTCTAAACCGGAGGATTTCGTCCG
CTTATTCGATAACCTCATTGCAAACATGAACGATATTCTGGCACTGAAAG
GGGTAGACAACGACGCTCAAATTGCAAACGATGCGGAAGGAAGACGCACA
TTGTTTCGCGCTCACAGGTGTTATCATTTGGCTCAGTGCTACCTTGCCGC
GCACATGCAAAGTGAGGCCGCTGCCTTGTTTGATCGCGTGGCCGTTCACG
CCAAAGCGCTCACCGGCAAGTATGCCGAAGAAGCGCAAAGGGTTGTCAAG
GAAAGCAAGGGGCTTAAGTGCAGGGCGGTAGCCGAGGCGTACATCAAGGA
GCATCAACTTGCGAGCAGTATGCGAGATATGAAGCTTTCTGAGAAAAGCT
CCTATGTGGGGACGAAGCGCATGATCGATCATCTCGATTCCTTTGAGTGC
TTTGCACCAACACCGGATAATAATCGGGTTATCTGTGACATGCCGCCGTC
CTTGGAGGCTATCCCATGCAAACCTGTGTTGTTTGATCTTGCCATCGACG
GTATTCGCTTCCCTCGCGAGGTTTCGAACGCGGAGCCGCAGGAGGCAGAA
CAAGCGCAAGATACTTCTGAACAGCAACAAGCCCCGCTTTCGACATTCTC
TGCTACGACAACACGAATAGGAAGATGGTGGAGCGGGAAGGGATGA

protein sequence of Gcaud2030.t1

>Gcaud2030.t1 ID=Gcaud2030.t1|Name=Gcaud2030.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=632bp
LTERNSRQHAAFFADDGRGSGDAINGDEEMVAVVSQAESPVADAQPASEN
GVKPSAEKVALPILSDITDAQNAHGLKHADYLRYRRYCTRRLSRLRSATN
ASNKHPSHHHRYHANPVTIEKIQHNQRALQIPLVLAEREWAFAMDVKREQ
PAGPHRARRTIIAKLSRAVHHAQHLAALCHDVADESTVFEAEAYWKSMIA
ALALEREQWPSALHAYQNVHKIYTGMAGLRAGTAAAPLFEKRLEDVDQAI
RFCNYNLSRSSGDADEALLQSLRDDANQSQDILSEKIEAALTEARKRAAV
SFGEVTWCGITVPLRAERVREAVLMASEESKVFSQKSAAVEAYDKLFMKY
NDAVKVVADELSQFRSSSAAADDRITELEYLVAYLTFNRLQHTISRNLLL
VDSYRNKRASKPEDFVRLFDNLIANMNDILALKGVDNDAQIANDAEGRRT
LFRAHRCYHLAQCYLAAHMQSEAAALFDRVAVHAKALTGKYAEEAQRVVK
ESKGLKCRAVAEAYIKEHQLASSMRDMKLSEKSSYVGTKRMIDHLDSFEC
FAPTPDNNRVICDMPPSLEAIPCKPVLFDLAIDGIRFPREVSNAEPQEAE
QAQDTSEQQQAPLSTFSATTTRIGRWWSGKG*

mRNA from alignment at NODE_538_length_22627_cov_4.365637:18012..19907+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2030.t1 ID=Gcaud2030.t1|Name=Gcaud2030.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1896bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:18012..19907+ (Gracilaria caudata M_176_S67 male)
TTGACTGAGCGGAACTCTCGCCAGCATGCGGCCTTCTTTGCAGATGACGG
TCGCGGCTCTGGCGATGCGATCAACGGCGACGAGGAGATGGTGGCGGTGG
TTTCTCAAGCCGAGTCGCCCGTCGCCGACGCGCAGCCCGCATCCGAGAAT
GGCGTGAAGCCGTCTGCGGAGAAGGTCGCGCTACCGATTCTCTCCGATAT
CACTGACGCCCAGAACGCTCACGGCCTCAAGCATGCCGACTACCTGCGCT
ATCGTCGGTACTGCACGCGCCGCCTCTCTCGTCTCCGTTCGGCAACGAAT
GCTTCGAATAAACACCCCTCGCACCACCATCGATACCATGCCAATCCCGT
CACCATCGAGAAGATTCAGCACAACCAACGCGCGCTTCAGATCCCGCTCG
TGCTGGCAGAGAGGGAGTGGGCGTTTGCGATGGACGTGAAGAGAGAACAG
CCTGCTGGCCCCCATCGAGCGCGCCGTACCATCATTGCCAAGCTCTCTCG
CGCTGTGCATCATGCGCAACATCTCGCCGCGCTTTGTCACGACGTGGCTG
ACGAGTCCACCGTCTTCGAGGCGGAGGCATATTGGAAGTCTATGATCGCC
GCGCTTGCTCTGGAACGGGAGCAGTGGCCATCTGCTCTGCATGCTTACCA
GAACGTCCACAAGATCTACACGGGTATGGCTGGCTTGCGTGCCGGAACGG
CAGCTGCGCCGTTGTTTGAGAAGCGCCTGGAAGACGTGGATCAGGCCATT
CGCTTTTGTAACTACAATCTGTCCAGATCCTCTGGAGACGCGGATGAGGC
TTTGTTGCAAAGCCTGCGCGATGATGCCAATCAATCGCAGGACATTCTTT
CGGAGAAGATCGAAGCGGCGTTGACAGAGGCTCGGAAACGCGCCGCCGTT
TCGTTTGGTGAGGTTACGTGGTGTGGAATTACTGTGCCGTTGCGCGCGGA
GCGTGTGCGGGAAGCAGTACTTATGGCGTCGGAGGAAAGCAAGGTGTTTT
CACAGAAGTCGGCTGCTGTGGAAGCCTACGATAAGCTGTTCATGAAGTAT
AATGATGCTGTCAAAGTCGTCGCAGATGAGCTTTCTCAGTTTCGCTCCTC
TTCTGCAGCTGCTGATGATCGTATCACGGAGCTTGAATATCTTGTTGCCT
ATCTCACGTTTAACCGTTTGCAACACACTATATCTCGAAATCTGCTGCTG
GTTGATTCGTATCGCAACAAGCGGGCGTCTAAACCGGAGGATTTCGTCCG
CTTATTCGATAACCTCATTGCAAACATGAACGATATTCTGGCACTGAAAG
GGGTAGACAACGACGCTCAAATTGCAAACGATGCGGAAGGAAGACGCACA
TTGTTTCGCGCTCACAGGTGTTATCATTTGGCTCAGTGCTACCTTGCCGC
GCACATGCAAAGTGAGGCCGCTGCCTTGTTTGATCGCGTGGCCGTTCACG
CCAAAGCGCTCACCGGCAAGTATGCCGAAGAAGCGCAAAGGGTTGTCAAG
GAAAGCAAGGGGCTTAAGTGCAGGGCGGTAGCCGAGGCGTACATCAAGGA
GCATCAACTTGCGAGCAGTATGCGAGATATGAAGCTTTCTGAGAAAAGCT
CCTATGTGGGGACGAAGCGCATGATCGATCATCTCGATTCCTTTGAGTGC
TTTGCACCAACACCGGATAATAATCGGGTTATCTGTGACATGCCGCCGTC
CTTGGAGGCTATCCCATGCAAACCTGTGTTGTTTGATCTTGCCATCGACG
GTATTCGCTTCCCTCGCGAGGTTTCGAACGCGGAGCCGCAGGAGGCAGAA
CAAGCGCAAGATACTTCTGAACAGCAACAAGCCCCGCTTTCGACATTCTC
TGCTACGACAACACGAATAGGAAGATGGTGGAGCGGGAAGGGATGA

Coding sequence (CDS) from alignment at NODE_538_length_22627_cov_4.365637:18012..19907+

>Gcaud2030.t1 ID=Gcaud2030.t1|Name=Gcaud2030.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1896bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:18012..19907+ (Gracilaria caudata M_176_S67 male)
TTGACTGAGCGGAACTCTCGCCAGCATGCGGCCTTCTTTGCAGATGACGG
TCGCGGCTCTGGCGATGCGATCAACGGCGACGAGGAGATGGTGGCGGTGG
TTTCTCAAGCCGAGTCGCCCGTCGCCGACGCGCAGCCCGCATCCGAGAAT
GGCGTGAAGCCGTCTGCGGAGAAGGTCGCGCTACCGATTCTCTCCGATAT
CACTGACGCCCAGAACGCTCACGGCCTCAAGCATGCCGACTACCTGCGCT
ATCGTCGGTACTGCACGCGCCGCCTCTCTCGTCTCCGTTCGGCAACGAAT
GCTTCGAATAAACACCCCTCGCACCACCATCGATACCATGCCAATCCCGT
CACCATCGAGAAGATTCAGCACAACCAACGCGCGCTTCAGATCCCGCTCG
TGCTGGCAGAGAGGGAGTGGGCGTTTGCGATGGACGTGAAGAGAGAACAG
CCTGCTGGCCCCCATCGAGCGCGCCGTACCATCATTGCCAAGCTCTCTCG
CGCTGTGCATCATGCGCAACATCTCGCCGCGCTTTGTCACGACGTGGCTG
ACGAGTCCACCGTCTTCGAGGCGGAGGCATATTGGAAGTCTATGATCGCC
GCGCTTGCTCTGGAACGGGAGCAGTGGCCATCTGCTCTGCATGCTTACCA
GAACGTCCACAAGATCTACACGGGTATGGCTGGCTTGCGTGCCGGAACGG
CAGCTGCGCCGTTGTTTGAGAAGCGCCTGGAAGACGTGGATCAGGCCATT
CGCTTTTGTAACTACAATCTGTCCAGATCCTCTGGAGACGCGGATGAGGC
TTTGTTGCAAAGCCTGCGCGATGATGCCAATCAATCGCAGGACATTCTTT
CGGAGAAGATCGAAGCGGCGTTGACAGAGGCTCGGAAACGCGCCGCCGTT
TCGTTTGGTGAGGTTACGTGGTGTGGAATTACTGTGCCGTTGCGCGCGGA
GCGTGTGCGGGAAGCAGTACTTATGGCGTCGGAGGAAAGCAAGGTGTTTT
CACAGAAGTCGGCTGCTGTGGAAGCCTACGATAAGCTGTTCATGAAGTAT
AATGATGCTGTCAAAGTCGTCGCAGATGAGCTTTCTCAGTTTCGCTCCTC
TTCTGCAGCTGCTGATGATCGTATCACGGAGCTTGAATATCTTGTTGCCT
ATCTCACGTTTAACCGTTTGCAACACACTATATCTCGAAATCTGCTGCTG
GTTGATTCGTATCGCAACAAGCGGGCGTCTAAACCGGAGGATTTCGTCCG
CTTATTCGATAACCTCATTGCAAACATGAACGATATTCTGGCACTGAAAG
GGGTAGACAACGACGCTCAAATTGCAAACGATGCGGAAGGAAGACGCACA
TTGTTTCGCGCTCACAGGTGTTATCATTTGGCTCAGTGCTACCTTGCCGC
GCACATGCAAAGTGAGGCCGCTGCCTTGTTTGATCGCGTGGCCGTTCACG
CCAAAGCGCTCACCGGCAAGTATGCCGAAGAAGCGCAAAGGGTTGTCAAG
GAAAGCAAGGGGCTTAAGTGCAGGGCGGTAGCCGAGGCGTACATCAAGGA
GCATCAACTTGCGAGCAGTATGCGAGATATGAAGCTTTCTGAGAAAAGCT
CCTATGTGGGGACGAAGCGCATGATCGATCATCTCGATTCCTTTGAGTGC
TTTGCACCAACACCGGATAATAATCGGGTTATCTGTGACATGCCGCCGTC
CTTGGAGGCTATCCCATGCAAACCTGTGTTGTTTGATCTTGCCATCGACG
GTATTCGCTTCCCTCGCGAGGTTTCGAACGCGGAGCCGCAGGAGGCAGAA
CAAGCGCAAGATACTTCTGAACAGCAACAAGCCCCGCTTTCGACATTCTC
TGCTACGACAACACGAATAGGAAGATGGTGGAGCGGGAAGGGATGA