Gcaud203.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud203.t1
Unique Name	Gcaud203.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	408

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4618_length_2124_cov_4.782095	contig	NODE_4618_length_2124_cov_4.782095:85..1308 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud203	Gcaud203	Gracilaria caudata M_176_S67 male	gene	NODE_4618_length_2124_cov_4.782095 85..1308 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud203.t1.start1	Gcaud203.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4618_length_2124_cov_4.782095 85..87 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud203.t1.CDS1	Gcaud203.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4618_length_2124_cov_4.782095 85..1308 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud203.t1.exon1	Gcaud203.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4618_length_2124_cov_4.782095 85..1308 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud203.t1.stop1	Gcaud203.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4618_length_2124_cov_4.782095 1306..1308 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud203.t1	Gcaud203.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4618_length_2124_cov_4.782095 85..1308 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4618_length_2124_cov_4.782095:85..1308+
coding sequence from alignment at NODE_4618_length_2124_cov_4.782095:85..1308+

mRNA sequence

>Gcaud203.t1 ID=Gcaud203.t1|Name=Gcaud203.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=408bp
MRNEPYRFSLDINVRNLWLDVDLLEKGVKVYTCKVPSRTRGMFSDLAVAQ
EFSLSFLQGIKLRGETKVGKQILEMISECFKEKRYNVTGARSVEHIVHAS
QVPGGYQVEDGNALIYGDRNYWRISGGEGDTIFKMSKYYMRVDTGTCRAD
GFHVVDIDRSTAGRLTFTLRGKTYLILNHFPIEKAKPSDEDGEPLPWSFN
EEDPFVLSYLPYAHLPRVMWKVVRFNRMPFAFLFGSDDEYKVVHDPVHYC
YRTNYLSYKPRLIVTAGKVMLNVDDFNSNSLEIADWGRSFWFYTLDTSYR
PVTIARFETKRKLPADTALMDSFPSKRNAATHIAACTPGGIRFQDRSVAP
NELVSYIEGRVYLRNLVASTPAAEQETVESVLRQYDPNYELTQAIEIANN
AIAISSN*

spliced messenger RNA

>Gcaud203.t1 ID=Gcaud203.t1|Name=Gcaud203.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at NODE_4618_length_2124_cov_4.782095:85..1308+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAACGAGCCGTACAGGTTTTCACTGGATATAAATGTGCGGAACTT
GTGGTTGGATGTTGACTTACTGGAGAAGGGCGTCAAGGTTTACACATGCA
AAGTTCCGTCTCGAACCAGGGGAATGTTTAGTGATCTTGCTGTTGCTCAG
GAATTTTCATTAAGCTTTCTTCAGGGAATTAAGCTGAGAGGAGAAACAAA
GGTGGGCAAGCAGATTCTTGAGATGATTTCGGAATGCTTTAAGGAGAAGC
GATACAACGTCACTGGAGCTAGATCTGTGGAACACATCGTGCATGCATCG
CAGGTGCCCGGTGGTTACCAAGTAGAAGACGGAAATGCGTTGATATACGG
AGATCGGAATTACTGGAGGATTTCCGGAGGAGAAGGAGATACCATTTTCA
AGATGTCGAAGTATTATATGCGTGTTGACACTGGAACTTGTCGTGCAGAT
GGGTTTCATGTTGTGGACATAGACAGAAGTACTGCTGGCCGCCTCACCTT
TACTCTGCGCGGCAAAACGTATTTGATACTGAACCACTTCCCGATTGAGA
AGGCTAAACCCTCCGACGAGGATGGTGAGCCTTTGCCTTGGAGTTTCAAT
GAAGAAGATCCCTTCGTGTTAAGCTATCTTCCGTACGCACATTTGCCGCG
TGTAATGTGGAAGGTAGTAAGATTCAACCGGATGCCATTCGCTTTTCTTT
TCGGAAGTGATGACGAGTACAAGGTGGTTCACGACCCGGTGCACTACTGT
TATCGCACGAACTATTTGAGTTATAAGCCGCGACTCATCGTTACTGCTGG
AAAGGTTATGTTGAATGTGGATGATTTCAATTCCAACAGTCTAGAGATCG
CAGATTGGGGTCGGAGTTTCTGGTTCTACACGCTGGACACTTCTTACAGA
CCGGTCACTATTGCACGTTTTGAAACGAAACGAAAACTTCCGGCGGATAC
TGCTCTAATGGATTCTTTCCCGTCGAAACGAAATGCAGCGACGCACATAG
CGGCGTGTACTCCAGGTGGAATTAGGTTCCAGGACAGGTCAGTAGCGCCG
AATGAACTTGTTTCATATATTGAAGGAAGGGTATACCTTCGGAACTTGGT
TGCGTCGACACCCGCAGCTGAGCAAGAAACAGTGGAAAGTGTGCTGCGAC
AATATGATCCAAACTACGAATTGACACAAGCGATTGAAATAGCGAACAAT
GCAATTGCCATTTCGAGCAATTAG

protein sequence of Gcaud203.t1

>Gcaud203.t1 ID=Gcaud203.t1|Name=Gcaud203.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=408bp
MRNEPYRFSLDINVRNLWLDVDLLEKGVKVYTCKVPSRTRGMFSDLAVAQ
EFSLSFLQGIKLRGETKVGKQILEMISECFKEKRYNVTGARSVEHIVHAS
QVPGGYQVEDGNALIYGDRNYWRISGGEGDTIFKMSKYYMRVDTGTCRAD
GFHVVDIDRSTAGRLTFTLRGKTYLILNHFPIEKAKPSDEDGEPLPWSFN
EEDPFVLSYLPYAHLPRVMWKVVRFNRMPFAFLFGSDDEYKVVHDPVHYC
YRTNYLSYKPRLIVTAGKVMLNVDDFNSNSLEIADWGRSFWFYTLDTSYR
PVTIARFETKRKLPADTALMDSFPSKRNAATHIAACTPGGIRFQDRSVAP
NELVSYIEGRVYLRNLVASTPAAEQETVESVLRQYDPNYELTQAIEIANN
AIAISSN*

mRNA from alignment at NODE_4618_length_2124_cov_4.782095:85..1308+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud203.t1 ID=Gcaud203.t1|Name=Gcaud203.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at NODE_4618_length_2124_cov_4.782095:85..1308+ (Gracilaria caudata M_176_S67 male)
ATGCGCAACGAGCCGTACAGGTTTTCACTGGATATAAATGTGCGGAACTT
GTGGTTGGATGTTGACTTACTGGAGAAGGGCGTCAAGGTTTACACATGCA
AAGTTCCGTCTCGAACCAGGGGAATGTTTAGTGATCTTGCTGTTGCTCAG
GAATTTTCATTAAGCTTTCTTCAGGGAATTAAGCTGAGAGGAGAAACAAA
GGTGGGCAAGCAGATTCTTGAGATGATTTCGGAATGCTTTAAGGAGAAGC
GATACAACGTCACTGGAGCTAGATCTGTGGAACACATCGTGCATGCATCG
CAGGTGCCCGGTGGTTACCAAGTAGAAGACGGAAATGCGTTGATATACGG
AGATCGGAATTACTGGAGGATTTCCGGAGGAGAAGGAGATACCATTTTCA
AGATGTCGAAGTATTATATGCGTGTTGACACTGGAACTTGTCGTGCAGAT
GGGTTTCATGTTGTGGACATAGACAGAAGTACTGCTGGCCGCCTCACCTT
TACTCTGCGCGGCAAAACGTATTTGATACTGAACCACTTCCCGATTGAGA
AGGCTAAACCCTCCGACGAGGATGGTGAGCCTTTGCCTTGGAGTTTCAAT
GAAGAAGATCCCTTCGTGTTAAGCTATCTTCCGTACGCACATTTGCCGCG
TGTAATGTGGAAGGTAGTAAGATTCAACCGGATGCCATTCGCTTTTCTTT
TCGGAAGTGATGACGAGTACAAGGTGGTTCACGACCCGGTGCACTACTGT
TATCGCACGAACTATTTGAGTTATAAGCCGCGACTCATCGTTACTGCTGG
AAAGGTTATGTTGAATGTGGATGATTTCAATTCCAACAGTCTAGAGATCG
CAGATTGGGGTCGGAGTTTCTGGTTCTACACGCTGGACACTTCTTACAGA
CCGGTCACTATTGCACGTTTTGAAACGAAACGAAAACTTCCGGCGGATAC
TGCTCTAATGGATTCTTTCCCGTCGAAACGAAATGCAGCGACGCACATAG
CGGCGTGTACTCCAGGTGGAATTAGGTTCCAGGACAGGTCAGTAGCGCCG
AATGAACTTGTTTCATATATTGAAGGAAGGGTATACCTTCGGAACTTGGT
TGCGTCGACACCCGCAGCTGAGCAAGAAACAGTGGAAAGTGTGCTGCGAC
AATATGATCCAAACTACGAATTGACACAAGCGATTGAAATAGCGAACAAT
GCAATTGCCATTTCGAGCAATTAG

Coding sequence (CDS) from alignment at NODE_4618_length_2124_cov_4.782095:85..1308+

>Gcaud203.t1 ID=Gcaud203.t1|Name=Gcaud203.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1224bp|location=Sequence derived from alignment at NODE_4618_length_2124_cov_4.782095:85..1308+ (Gracilaria caudata M_176_S67 male)
ATGCGCAACGAGCCGTACAGGTTTTCACTGGATATAAATGTGCGGAACTT
GTGGTTGGATGTTGACTTACTGGAGAAGGGCGTCAAGGTTTACACATGCA
AAGTTCCGTCTCGAACCAGGGGAATGTTTAGTGATCTTGCTGTTGCTCAG
GAATTTTCATTAAGCTTTCTTCAGGGAATTAAGCTGAGAGGAGAAACAAA
GGTGGGCAAGCAGATTCTTGAGATGATTTCGGAATGCTTTAAGGAGAAGC
GATACAACGTCACTGGAGCTAGATCTGTGGAACACATCGTGCATGCATCG
CAGGTGCCCGGTGGTTACCAAGTAGAAGACGGAAATGCGTTGATATACGG
AGATCGGAATTACTGGAGGATTTCCGGAGGAGAAGGAGATACCATTTTCA
AGATGTCGAAGTATTATATGCGTGTTGACACTGGAACTTGTCGTGCAGAT
GGGTTTCATGTTGTGGACATAGACAGAAGTACTGCTGGCCGCCTCACCTT
TACTCTGCGCGGCAAAACGTATTTGATACTGAACCACTTCCCGATTGAGA
AGGCTAAACCCTCCGACGAGGATGGTGAGCCTTTGCCTTGGAGTTTCAAT
GAAGAAGATCCCTTCGTGTTAAGCTATCTTCCGTACGCACATTTGCCGCG
TGTAATGTGGAAGGTAGTAAGATTCAACCGGATGCCATTCGCTTTTCTTT
TCGGAAGTGATGACGAGTACAAGGTGGTTCACGACCCGGTGCACTACTGT
TATCGCACGAACTATTTGAGTTATAAGCCGCGACTCATCGTTACTGCTGG
AAAGGTTATGTTGAATGTGGATGATTTCAATTCCAACAGTCTAGAGATCG
CAGATTGGGGTCGGAGTTTCTGGTTCTACACGCTGGACACTTCTTACAGA
CCGGTCACTATTGCACGTTTTGAAACGAAACGAAAACTTCCGGCGGATAC
TGCTCTAATGGATTCTTTCCCGTCGAAACGAAATGCAGCGACGCACATAG
CGGCGTGTACTCCAGGTGGAATTAGGTTCCAGGACAGGTCAGTAGCGCCG
AATGAACTTGTTTCATATATTGAAGGAAGGGTATACCTTCGGAACTTGGT
TGCGTCGACACCCGCAGCTGAGCAAGAAACAGTGGAAAGTGTGCTGCGAC
AATATGATCCAAACTACGAATTGACACAAGCGATTGAAATAGCGAACAAT
GCAATTGCCATTTCGAGCAATTAG