|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005703626.1 |
| Preferred name | dnj-25 |
| PFAMs | DIX,DnaJ |
| Max annot lvl | 2759|Eukaryota |
| GOs | GO:0006810,GO:0006897,GO:0006898,GO:0008150,GO:0016192,GO:0051179,GO:0051234,GO:0098657 |
| Evalue | 1.7e-14 |
| EggNOG OGs | KOG0431@1|root,KOG0431@2759|Eukaryota |
| Description | clathrin-coated pit assembly |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2029.t1.stop1 | Gcaud2029.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_538_length_22627_cov_4.365637 15172..15174 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2029.t1.exon1 | Gcaud2029.t1.exon1 | Gracilaria caudata M_176_S67 male | exon | NODE_538_length_22627_cov_4.365637 15172..17694 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2029.t1.start1 | Gcaud2029.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_538_length_22627_cov_4.365637 17692..17694 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2029.t1 ID=Gcaud2029.t1|Name=Gcaud2029.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=841bp MDGSAFVKGFKNIRNGVIRTAERASVEVRKAVGISNISLPESFPEYDHIS AEFKAQTKNLDTLHHDALSAYEAIQRSTGTAYTLAAKLRDSLSSNSSRAP YLAADALVNVQASIVDDVLPRVERRVKKRVIDPTKIELNRARQLNHHMDE RKRCYIDAARYHERISDGSASQEDVRKADDKMAELTQRTNELVSTISEAV KRRSALIESIVAETIEFQRRFYVDSGRCMERAIDLIGTEKLATMRGGTDE APERPSSVNLPPSQPEPAQPTPQPPPRRSSTVPVHASSIWNELDDDDDDD DEDQDDTYNQRPKSSVYSDNIFDDPLPTRPEPESSRRSEPGYASDSSSGI ANPFGRERAGSSYPSNGVGKRESTYPSGGVGQKESVSSYPTGGSRTRDKY PSSRTRTAAKPPPGPTSSFAPSSSRESNPEKPKSTRPVEPEADLLGFDTP TPPKPVRSRRSPSPPSSTNTEDLLDLGGIPETSSSQRSSMRRSSSSSAME GDLLGDLGAAPQPRPRSSTQSRSRRSAPQPSFSAPTMSATPIPSAKAPAM NATPKPSAKPATPSISKEEELLQREQLKKKHEREIKARADEKLAAVRERE RADAKEREEKDNARSAAERKINAWTGNGTRRGNLRALLASLDTVLYPTAT WKQVSMDVLKENSKVKVNYHKAILQVHPDKISSKNLSPDNLVLAELVFDE LKNGYEVWTAECEGRPPPPGSVGPRNAQNQNQGFGGMSGMSGMYNNMGRT GMGSMGRGGMGGMGMGGMGGMGRGNMGMGNMGRGGMGFMGSGMGGMGMGG MGMGGRGMNGMGMGGMGGTGRRGGMGGMSQNYGRGMNSKR* back to topspliced messenger RNA >Gcaud2029.t1 ID=Gcaud2029.t1|Name=Gcaud2029.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2523bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:15172..17694- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGACGGAAGCGCCTTTGTCAAGGGCTTCAAGAACATTCGCAACGGCGT CATTCGCACCGCCGAACGTGCCAGCGTCGAAGTGAGAAAGGCGGTTGGCA TTTCGAACATTTCTTTGCCAGAGTCCTTCCCCGAGTATGACCATATTTCC GCCGAGTTCAAGGCGCAGACCAAAAACCTCGACACACTCCATCACGATGC CTTGTCCGCCTATGAGGCCATTCAGCGTTCCACCGGTACTGCATACACCC TAGCTGCCAAGCTTCGCGACTCCCTCTCCTCTAACTCCTCCAGGGCGCCA TATCTCGCCGCCGACGCTCTTGTCAATGTGCAGGCTTCCATTGTCGACGA CGTCCTACCACGCGTTGAGAGACGCGTCAAGAAGAGGGTGATTGACCCCA CAAAAATTGAGCTTAATAGAGCTCGTCAACTCAATCATCACATGGATGAA AGGAAGCGCTGTTATATCGATGCCGCCCGCTATCATGAGCGCATTTCAGA CGGCTCCGCCTCTCAGGAAGATGTTCGAAAGGCCGACGATAAGATGGCCG AGCTCACTCAGCGCACCAACGAGCTGGTCTCCACCATATCTGAAGCTGTA AAACGCCGCTCCGCTCTTATCGAATCTATTGTTGCCGAGACTATAGAGTT TCAGCGTCGATTTTACGTAGACTCTGGCCGATGTATGGAGCGTGCTATAG ACTTGATCGGCACCGAAAAGCTCGCTACAATGCGAGGAGGGACTGATGAA GCCCCCGAACGTCCAAGTTCTGTCAACCTGCCCCCCTCCCAACCTGAGCC AGCTCAGCCCACCCCTCAACCGCCTCCCAGACGCTCTTCCACAGTTCCGG TACACGCATCTAGCATATGGAACGAACTCGACGATGACGATGATGATGAC GACGAAGACCAGGATGATACCTACAATCAACGTCCGAAGTCAAGCGTGTA TTCAGACAACATTTTCGACGATCCGCTTCCAACCCGCCCGGAACCTGAGA GCTCACGGCGCTCCGAACCTGGCTATGCCTCAGATTCCTCATCAGGTATT GCCAATCCTTTTGGAAGGGAACGTGCGGGCAGTTCTTACCCATCCAATGG AGTCGGAAAACGCGAGTCTACTTATCCCAGCGGTGGTGTGGGGCAGAAGG AGTCTGTTAGCAGCTACCCTACCGGTGGCTCCCGTACCAGAGATAAGTAT CCCAGTTCTAGAACCCGTACGGCTGCTAAACCCCCTCCCGGTCCGACGTC ATCGTTTGCTCCCTCATCGAGTCGCGAAAGCAATCCTGAGAAACCAAAAT CAACTCGCCCTGTCGAGCCAGAAGCCGATTTACTAGGATTCGATACTCCA ACTCCTCCAAAGCCTGTGAGGTCGAGGAGGTCTCCGTCCCCTCCCTCTTC GACTAACACGGAGGATCTTCTTGACCTTGGCGGTATACCTGAAACATCGT CAAGCCAGCGCTCATCCATGAGAAGGAGTTCGTCTTCCTCTGCCATGGAG GGGGATTTGTTGGGTGACCTTGGTGCGGCTCCGCAACCCCGACCTCGTTC GTCGACGCAGTCTCGGTCTAGGCGATCAGCCCCCCAACCGTCGTTTTCAG CTCCGACTATGAGTGCCACACCCATACCGTCTGCAAAAGCTCCAGCTATG AATGCCACACCCAAACCGTCTGCAAAACCTGCGACCCCGTCGATATCTAA GGAGGAGGAGCTTTTGCAGCGTGAGCAGTTGAAAAAGAAACACGAGAGAG AAATCAAGGCCCGGGCAGATGAGAAACTTGCGGCCGTTCGTGAAAGAGAA AGAGCAGATGCGAAGGAACGTGAGGAAAAGGATAACGCGCGGTCAGCGGC GGAGAGGAAGATCAATGCTTGGACTGGAAACGGAACTCGTCGTGGAAACC TACGTGCACTGCTCGCTTCGTTGGATACGGTGTTGTACCCTACCGCAACA TGGAAACAAGTGTCTATGGATGTTTTGAAAGAGAACTCAAAGGTGAAGGT CAACTATCACAAGGCTATCTTGCAAGTACACCCGGACAAGATTTCGTCGA AGAATCTCTCTCCGGATAATCTTGTACTTGCAGAACTTGTATTTGATGAA CTCAAGAACGGTTATGAGGTTTGGACAGCCGAGTGTGAAGGCAGACCTCC ACCACCTGGATCAGTCGGTCCAAGAAATGCGCAGAACCAAAATCAAGGAT TTGGTGGTATGAGTGGGATGTCAGGAATGTACAACAATATGGGACGAACA GGGATGGGTAGCATGGGTAGAGGTGGTATGGGCGGCATGGGAATGGGAGG CATGGGCGGAATGGGGCGAGGTAACATGGGCATGGGAAATATGGGAAGAG GAGGCATGGGCTTCATGGGGAGCGGAATGGGTGGAATGGGAATGGGAGGT ATGGGAATGGGAGGTCGAGGAATGAACGGTATGGGTATGGGCGGAATGGG AGGAACGGGACGGCGAGGTGGGATGGGTGGTATGTCTCAGAACTATGGGC GAGGAATGAACTCAAAACGATAA back to topprotein sequence of Gcaud2029.t1 >Gcaud2029.t1 ID=Gcaud2029.t1|Name=Gcaud2029.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=841bp
MDGSAFVKGFKNIRNGVIRTAERASVEVRKAVGISNISLPESFPEYDHIS AEFKAQTKNLDTLHHDALSAYEAIQRSTGTAYTLAAKLRDSLSSNSSRAP YLAADALVNVQASIVDDVLPRVERRVKKRVIDPTKIELNRARQLNHHMDE RKRCYIDAARYHERISDGSASQEDVRKADDKMAELTQRTNELVSTISEAV KRRSALIESIVAETIEFQRRFYVDSGRCMERAIDLIGTEKLATMRGGTDE APERPSSVNLPPSQPEPAQPTPQPPPRRSSTVPVHASSIWNELDDDDDDD DEDQDDTYNQRPKSSVYSDNIFDDPLPTRPEPESSRRSEPGYASDSSSGI ANPFGRERAGSSYPSNGVGKRESTYPSGGVGQKESVSSYPTGGSRTRDKY PSSRTRTAAKPPPGPTSSFAPSSSRESNPEKPKSTRPVEPEADLLGFDTP TPPKPVRSRRSPSPPSSTNTEDLLDLGGIPETSSSQRSSMRRSSSSSAME GDLLGDLGAAPQPRPRSSTQSRSRRSAPQPSFSAPTMSATPIPSAKAPAM NATPKPSAKPATPSISKEEELLQREQLKKKHEREIKARADEKLAAVRERE RADAKEREEKDNARSAAERKINAWTGNGTRRGNLRALLASLDTVLYPTAT WKQVSMDVLKENSKVKVNYHKAILQVHPDKISSKNLSPDNLVLAELVFDE LKNGYEVWTAECEGRPPPPGSVGPRNAQNQNQGFGGMSGMSGMYNNMGRT GMGSMGRGGMGGMGMGGMGGMGRGNMGMGNMGRGGMGFMGSGMGGMGMGG MGMGGRGMNGMGMGGMGGTGRRGGMGGMSQNYGRGMNSKR* back to topmRNA from alignment at NODE_538_length_22627_cov_4.365637:15172..17694- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2029.t1 ID=Gcaud2029.t1|Name=Gcaud2029.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2523bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:15172..17694- (Gracilaria caudata M_176_S67 male) ATGGACGGAAGCGCCTTTGTCAAGGGCTTCAAGAACATTCGCAACGGCGT
CATTCGCACCGCCGAACGTGCCAGCGTCGAAGTGAGAAAGGCGGTTGGCA
TTTCGAACATTTCTTTGCCAGAGTCCTTCCCCGAGTATGACCATATTTCC
GCCGAGTTCAAGGCGCAGACCAAAAACCTCGACACACTCCATCACGATGC
CTTGTCCGCCTATGAGGCCATTCAGCGTTCCACCGGTACTGCATACACCC
TAGCTGCCAAGCTTCGCGACTCCCTCTCCTCTAACTCCTCCAGGGCGCCA
TATCTCGCCGCCGACGCTCTTGTCAATGTGCAGGCTTCCATTGTCGACGA
CGTCCTACCACGCGTTGAGAGACGCGTCAAGAAGAGGGTGATTGACCCCA
CAAAAATTGAGCTTAATAGAGCTCGTCAACTCAATCATCACATGGATGAA
AGGAAGCGCTGTTATATCGATGCCGCCCGCTATCATGAGCGCATTTCAGA
CGGCTCCGCCTCTCAGGAAGATGTTCGAAAGGCCGACGATAAGATGGCCG
AGCTCACTCAGCGCACCAACGAGCTGGTCTCCACCATATCTGAAGCTGTA
AAACGCCGCTCCGCTCTTATCGAATCTATTGTTGCCGAGACTATAGAGTT
TCAGCGTCGATTTTACGTAGACTCTGGCCGATGTATGGAGCGTGCTATAG
ACTTGATCGGCACCGAAAAGCTCGCTACAATGCGAGGAGGGACTGATGAA
GCCCCCGAACGTCCAAGTTCTGTCAACCTGCCCCCCTCCCAACCTGAGCC
AGCTCAGCCCACCCCTCAACCGCCTCCCAGACGCTCTTCCACAGTTCCGG
TACACGCATCTAGCATATGGAACGAACTCGACGATGACGATGATGATGAC
GACGAAGACCAGGATGATACCTACAATCAACGTCCGAAGTCAAGCGTGTA
TTCAGACAACATTTTCGACGATCCGCTTCCAACCCGCCCGGAACCTGAGA
GCTCACGGCGCTCCGAACCTGGCTATGCCTCAGATTCCTCATCAGGTATT
GCCAATCCTTTTGGAAGGGAACGTGCGGGCAGTTCTTACCCATCCAATGG
AGTCGGAAAACGCGAGTCTACTTATCCCAGCGGTGGTGTGGGGCAGAAGG
AGTCTGTTAGCAGCTACCCTACCGGTGGCTCCCGTACCAGAGATAAGTAT
CCCAGTTCTAGAACCCGTACGGCTGCTAAACCCCCTCCCGGTCCGACGTC
ATCGTTTGCTCCCTCATCGAGTCGCGAAAGCAATCCTGAGAAACCAAAAT
CAACTCGCCCTGTCGAGCCAGAAGCCGATTTACTAGGATTCGATACTCCA
ACTCCTCCAAAGCCTGTGAGGTCGAGGAGGTCTCCGTCCCCTCCCTCTTC
GACTAACACGGAGGATCTTCTTGACCTTGGCGGTATACCTGAAACATCGT
CAAGCCAGCGCTCATCCATGAGAAGGAGTTCGTCTTCCTCTGCCATGGAG
GGGGATTTGTTGGGTGACCTTGGTGCGGCTCCGCAACCCCGACCTCGTTC
GTCGACGCAGTCTCGGTCTAGGCGATCAGCCCCCCAACCGTCGTTTTCAG
CTCCGACTATGAGTGCCACACCCATACCGTCTGCAAAAGCTCCAGCTATG
AATGCCACACCCAAACCGTCTGCAAAACCTGCGACCCCGTCGATATCTAA
GGAGGAGGAGCTTTTGCAGCGTGAGCAGTTGAAAAAGAAACACGAGAGAG
AAATCAAGGCCCGGGCAGATGAGAAACTTGCGGCCGTTCGTGAAAGAGAA
AGAGCAGATGCGAAGGAACGTGAGGAAAAGGATAACGCGCGGTCAGCGGC
GGAGAGGAAGATCAATGCTTGGACTGGAAACGGAACTCGTCGTGGAAACC
TACGTGCACTGCTCGCTTCGTTGGATACGGTGTTGTACCCTACCGCAACA
TGGAAACAAGTGTCTATGGATGTTTTGAAAGAGAACTCAAAGGTGAAGGT
CAACTATCACAAGGCTATCTTGCAAGTACACCCGGACAAGATTTCGTCGA
AGAATCTCTCTCCGGATAATCTTGTACTTGCAGAACTTGTATTTGATGAA
CTCAAGAACGGTTATGAGGTTTGGACAGCCGAGTGTGAAGGCAGACCTCC
ACCACCTGGATCAGTCGGTCCAAGAAATGCGCAGAACCAAAATCAAGGAT
TTGGTGGTATGAGTGGGATGTCAGGAATGTACAACAATATGGGACGAACA
GGGATGGGTAGCATGGGTAGAGGTGGTATGGGCGGCATGGGAATGGGAGG
CATGGGCGGAATGGGGCGAGGTAACATGGGCATGGGAAATATGGGAAGAG
GAGGCATGGGCTTCATGGGGAGCGGAATGGGTGGAATGGGAATGGGAGGT
ATGGGAATGGGAGGTCGAGGAATGAACGGTATGGGTATGGGCGGAATGGG
AGGAACGGGACGGCGAGGTGGGATGGGTGGTATGTCTCAGAACTATGGGC
GAGGAATGAACTCAAAACGATAA back to topCoding sequence (CDS) from alignment at NODE_538_length_22627_cov_4.365637:15172..17694- >Gcaud2029.t1 ID=Gcaud2029.t1|Name=Gcaud2029.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2523bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:15172..17694- (Gracilaria caudata M_176_S67 male) ATGGACGGAAGCGCCTTTGTCAAGGGCTTCAAGAACATTCGCAACGGCGT CATTCGCACCGCCGAACGTGCCAGCGTCGAAGTGAGAAAGGCGGTTGGCA TTTCGAACATTTCTTTGCCAGAGTCCTTCCCCGAGTATGACCATATTTCC GCCGAGTTCAAGGCGCAGACCAAAAACCTCGACACACTCCATCACGATGC CTTGTCCGCCTATGAGGCCATTCAGCGTTCCACCGGTACTGCATACACCC TAGCTGCCAAGCTTCGCGACTCCCTCTCCTCTAACTCCTCCAGGGCGCCA TATCTCGCCGCCGACGCTCTTGTCAATGTGCAGGCTTCCATTGTCGACGA CGTCCTACCACGCGTTGAGAGACGCGTCAAGAAGAGGGTGATTGACCCCA CAAAAATTGAGCTTAATAGAGCTCGTCAACTCAATCATCACATGGATGAA AGGAAGCGCTGTTATATCGATGCCGCCCGCTATCATGAGCGCATTTCAGA CGGCTCCGCCTCTCAGGAAGATGTTCGAAAGGCCGACGATAAGATGGCCG AGCTCACTCAGCGCACCAACGAGCTGGTCTCCACCATATCTGAAGCTGTA AAACGCCGCTCCGCTCTTATCGAATCTATTGTTGCCGAGACTATAGAGTT TCAGCGTCGATTTTACGTAGACTCTGGCCGATGTATGGAGCGTGCTATAG ACTTGATCGGCACCGAAAAGCTCGCTACAATGCGAGGAGGGACTGATGAA GCCCCCGAACGTCCAAGTTCTGTCAACCTGCCCCCCTCCCAACCTGAGCC AGCTCAGCCCACCCCTCAACCGCCTCCCAGACGCTCTTCCACAGTTCCGG TACACGCATCTAGCATATGGAACGAACTCGACGATGACGATGATGATGAC GACGAAGACCAGGATGATACCTACAATCAACGTCCGAAGTCAAGCGTGTA TTCAGACAACATTTTCGACGATCCGCTTCCAACCCGCCCGGAACCTGAGA GCTCACGGCGCTCCGAACCTGGCTATGCCTCAGATTCCTCATCAGGTATT GCCAATCCTTTTGGAAGGGAACGTGCGGGCAGTTCTTACCCATCCAATGG AGTCGGAAAACGCGAGTCTACTTATCCCAGCGGTGGTGTGGGGCAGAAGG AGTCTGTTAGCAGCTACCCTACCGGTGGCTCCCGTACCAGAGATAAGTAT CCCAGTTCTAGAACCCGTACGGCTGCTAAACCCCCTCCCGGTCCGACGTC ATCGTTTGCTCCCTCATCGAGTCGCGAAAGCAATCCTGAGAAACCAAAAT CAACTCGCCCTGTCGAGCCAGAAGCCGATTTACTAGGATTCGATACTCCA ACTCCTCCAAAGCCTGTGAGGTCGAGGAGGTCTCCGTCCCCTCCCTCTTC GACTAACACGGAGGATCTTCTTGACCTTGGCGGTATACCTGAAACATCGT CAAGCCAGCGCTCATCCATGAGAAGGAGTTCGTCTTCCTCTGCCATGGAG GGGGATTTGTTGGGTGACCTTGGTGCGGCTCCGCAACCCCGACCTCGTTC GTCGACGCAGTCTCGGTCTAGGCGATCAGCCCCCCAACCGTCGTTTTCAG CTCCGACTATGAGTGCCACACCCATACCGTCTGCAAAAGCTCCAGCTATG AATGCCACACCCAAACCGTCTGCAAAACCTGCGACCCCGTCGATATCTAA GGAGGAGGAGCTTTTGCAGCGTGAGCAGTTGAAAAAGAAACACGAGAGAG AAATCAAGGCCCGGGCAGATGAGAAACTTGCGGCCGTTCGTGAAAGAGAA AGAGCAGATGCGAAGGAACGTGAGGAAAAGGATAACGCGCGGTCAGCGGC GGAGAGGAAGATCAATGCTTGGACTGGAAACGGAACTCGTCGTGGAAACC TACGTGCACTGCTCGCTTCGTTGGATACGGTGTTGTACCCTACCGCAACA TGGAAACAAGTGTCTATGGATGTTTTGAAAGAGAACTCAAAGGTGAAGGT CAACTATCACAAGGCTATCTTGCAAGTACACCCGGACAAGATTTCGTCGA AGAATCTCTCTCCGGATAATCTTGTACTTGCAGAACTTGTATTTGATGAA CTCAAGAACGGTTATGAGGTTTGGACAGCCGAGTGTGAAGGCAGACCTCC ACCACCTGGATCAGTCGGTCCAAGAAATGCGCAGAACCAAAATCAAGGAT TTGGTGGTATGAGTGGGATGTCAGGAATGTACAACAATATGGGACGAACA GGGATGGGTAGCATGGGTAGAGGTGGTATGGGCGGCATGGGAATGGGAGG CATGGGCGGAATGGGGCGAGGTAACATGGGCATGGGAAATATGGGAAGAG GAGGCATGGGCTTCATGGGGAGCGGAATGGGTGGAATGGGAATGGGAGGT ATGGGAATGGGAGGTCGAGGAATGAACGGTATGGGTATGGGCGGAATGGG AGGAACGGGACGGCGAGGTGGGATGGGTGGTATGTCTCAGAACTATGGGC GAGGAATGAACTCAAAACGATAA back to top
|