Gcaud2027.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2027.t1
Unique Name	Gcaud2027.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	475

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_538_length_22627_cov_4.365637	contig	NODE_538_length_22627_cov_4.365637:10508..11932 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2027	Gcaud2027	Gracilaria caudata M_176_S67 male	gene	NODE_538_length_22627_cov_4.365637 10508..11932 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2027.t1.start1	Gcaud2027.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_538_length_22627_cov_4.365637 10508..10510 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2027.t1.CDS1	Gcaud2027.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_538_length_22627_cov_4.365637 10508..11932 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2027.t1.exon1	Gcaud2027.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_538_length_22627_cov_4.365637 10508..11932 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2027.t1.stop1	Gcaud2027.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_538_length_22627_cov_4.365637 11930..11932 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2027.t1	Gcaud2027.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_538_length_22627_cov_4.365637 10508..11932 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_538_length_22627_cov_4.365637:10508..11932+
coding sequence from alignment at NODE_538_length_22627_cov_4.365637:10508..11932+

mRNA sequence

>Gcaud2027.t1 ID=Gcaud2027.t1|Name=Gcaud2027.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=475bp
MNFVHTDELLSLMAEKTDEQEDFRTMHARLDEEIISSISFAGQAGRAQTL
KQFENNTQRDEVHAPLHDDLLDPILHAAHSENLQRPRAFASEKRGKKSSI
GKNRLSKPSPKPKRYSLKADDRRRRSRRNSKRQEPATSDREKWTGLAQNL
LALMGASRRSRTDLDSDQMRRKRSTFRKQVTALLVPFFKKPKEAAVFLAT
LEARELYSEGQVSSSPEQCKAKQAEGEGSWKKGPGLNLTGKNHSGQSDRC
VSKNPVMWSMFSVDWESTRVQRRRVARKRTILKQGQSADGALKENIDAQQ
INSRSHQPVVPKKNKAVAMRRENERRHWRVLKDEMISIILENIRMMVTLK
KLCRPRLLAKLRQEATDLGIVESFNNFANTLPLNTDINSWLGSNDQEPVA
NADEIVLSFLQSNEKNASENQSAPDNKRSSRNSLESRSETSFSDLSYELQ
ELENVIRSALDDFDPEREDKSYFL*

spliced messenger RNA

>Gcaud2027.t1 ID=Gcaud2027.t1|Name=Gcaud2027.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:10508..11932+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTCGTGCACACTGATGAGTTGCTTAGCTTAATGGCAGAGAAAAC
AGACGAACAAGAAGACTTCAGAACAATGCATGCTCGTTTAGACGAAGAAA
TAATATCCTCGATCTCATTTGCAGGACAAGCAGGGAGGGCTCAAACGCTG
AAACAATTTGAAAATAACACCCAAAGGGATGAAGTACATGCTCCCTTACA
CGACGACCTTTTAGACCCCATCTTACATGCAGCACACTCGGAAAACCTTC
AAAGACCAAGGGCCTTTGCTAGTGAAAAACGTGGAAAGAAGTCTTCCATT
GGGAAAAATCGTTTGTCTAAGCCTTCCCCCAAACCCAAAAGGTATAGTTT
GAAAGCTGATGACagaaggagaagaagcagaagaaATTCAAAACGTCAAG
AACCAGCAACAAGCGATCGCGAGAAGTGGACAGGGTTGGCGCAGAATCTT
CTAGCGTTAATGGGAGCATCCAGAAGAAGCAGGACAGATTTGGATTCTGA
TCAAATGAGAAGGAAAAGATCAACTTTCAGGAAGCAGGTAACTGCTCTCC
TTGTGCCGTTTTTCAAGAAACCAAAAGAGGCGGCAGTATTTCTTGCGACT
TTAGAGGCAAGAGAACTGTATTCAGAGGGACAAGTAAGTTCTTCACCAGA
ACAATGTAAGGCGAAACAAGCTGAAGGAGAAGGAAGTTGGAAAAAGGGAC
CTGGACTTAATCTTACGGGCAAAAACCATTCTGGTCAGAGTGATCGCTGT
GTTTCGAAGAACCCTGTCATGTGGAGCATGTTTTCTGTCGACTGGGAATC
TACGAGGGTGCAGAGACGAAGGGTAGCAAGAAAAAGGACAATACTGAAGC
AGGGACAAAGCGCCGATGGTGCGCTAAAGGAAAATATAGACGCTCAGCAG
ATAAACTCTCGTTCGCACCAGCCGGTTGTACCGAAAAAGAACAAAGCTGT
AGCAATGCGTCGCGAGAATGAGAGGCGACATTGGCGTGTTTTGAAAGACG
AAATGATTTCCATTATCTTGGAGAACATACGGATGATGGTGACCCTTAAA
AAGCTCTGCAGGCCAAGGCTTCTTGCCAAGCTTAGACAAGAAGCGACTGA
TTTGGGTATCGTTGAGTCTTTTAACAACTTCGCAAATACTTTACCTCTCA
ATACAGATATCAACAGCTGGCTTGGAAGCAACGATCAAGAGCCCGTGGCA
AATGCAGATGAAATCGTGCTCAGCTTTTTGCAATCGAATGAAAAGAATGC
ATCTGAGAACCAGAGCGCACCAGACAACAAGCGCAGCTCAAGGAATTCAT
TGGAGAGCAGAAGCGAGACGTCATTTTCTGACCTTTCGTACGAGCTCCAA
GAGCTTGAGAATGTCATTCGTTCCGCACTCGACGATTTTGACCCCGAGCG
AGAAGACAAGTCGTACTTTCTGTGA

protein sequence of Gcaud2027.t1

>Gcaud2027.t1 ID=Gcaud2027.t1|Name=Gcaud2027.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=475bp
MNFVHTDELLSLMAEKTDEQEDFRTMHARLDEEIISSISFAGQAGRAQTL
KQFENNTQRDEVHAPLHDDLLDPILHAAHSENLQRPRAFASEKRGKKSSI
GKNRLSKPSPKPKRYSLKADDRRRRSRRNSKRQEPATSDREKWTGLAQNL
LALMGASRRSRTDLDSDQMRRKRSTFRKQVTALLVPFFKKPKEAAVFLAT
LEARELYSEGQVSSSPEQCKAKQAEGEGSWKKGPGLNLTGKNHSGQSDRC
VSKNPVMWSMFSVDWESTRVQRRRVARKRTILKQGQSADGALKENIDAQQ
INSRSHQPVVPKKNKAVAMRRENERRHWRVLKDEMISIILENIRMMVTLK
KLCRPRLLAKLRQEATDLGIVESFNNFANTLPLNTDINSWLGSNDQEPVA
NADEIVLSFLQSNEKNASENQSAPDNKRSSRNSLESRSETSFSDLSYELQ
ELENVIRSALDDFDPEREDKSYFL*

mRNA from alignment at NODE_538_length_22627_cov_4.365637:10508..11932+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2027.t1 ID=Gcaud2027.t1|Name=Gcaud2027.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:10508..11932+ (Gracilaria caudata M_176_S67 male)
ATGAATTTCGTGCACACTGATGAGTTGCTTAGCTTAATGGCAGAGAAAAC
AGACGAACAAGAAGACTTCAGAACAATGCATGCTCGTTTAGACGAAGAAA
TAATATCCTCGATCTCATTTGCAGGACAAGCAGGGAGGGCTCAAACGCTG
AAACAATTTGAAAATAACACCCAAAGGGATGAAGTACATGCTCCCTTACA
CGACGACCTTTTAGACCCCATCTTACATGCAGCACACTCGGAAAACCTTC
AAAGACCAAGGGCCTTTGCTAGTGAAAAACGTGGAAAGAAGTCTTCCATT
GGGAAAAATCGTTTGTCTAAGCCTTCCCCCAAACCCAAAAGGTATAGTTT
GAAAGCTGATGACagaaggagaagaagcagaagaaATTCAAAACGTCAAG
AACCAGCAACAAGCGATCGCGAGAAGTGGACAGGGTTGGCGCAGAATCTT
CTAGCGTTAATGGGAGCATCCAGAAGAAGCAGGACAGATTTGGATTCTGA
TCAAATGAGAAGGAAAAGATCAACTTTCAGGAAGCAGGTAACTGCTCTCC
TTGTGCCGTTTTTCAAGAAACCAAAAGAGGCGGCAGTATTTCTTGCGACT
TTAGAGGCAAGAGAACTGTATTCAGAGGGACAAGTAAGTTCTTCACCAGA
ACAATGTAAGGCGAAACAAGCTGAAGGAGAAGGAAGTTGGAAAAAGGGAC
CTGGACTTAATCTTACGGGCAAAAACCATTCTGGTCAGAGTGATCGCTGT
GTTTCGAAGAACCCTGTCATGTGGAGCATGTTTTCTGTCGACTGGGAATC
TACGAGGGTGCAGAGACGAAGGGTAGCAAGAAAAAGGACAATACTGAAGC
AGGGACAAAGCGCCGATGGTGCGCTAAAGGAAAATATAGACGCTCAGCAG
ATAAACTCTCGTTCGCACCAGCCGGTTGTACCGAAAAAGAACAAAGCTGT
AGCAATGCGTCGCGAGAATGAGAGGCGACATTGGCGTGTTTTGAAAGACG
AAATGATTTCCATTATCTTGGAGAACATACGGATGATGGTGACCCTTAAA
AAGCTCTGCAGGCCAAGGCTTCTTGCCAAGCTTAGACAAGAAGCGACTGA
TTTGGGTATCGTTGAGTCTTTTAACAACTTCGCAAATACTTTACCTCTCA
ATACAGATATCAACAGCTGGCTTGGAAGCAACGATCAAGAGCCCGTGGCA
AATGCAGATGAAATCGTGCTCAGCTTTTTGCAATCGAATGAAAAGAATGC
ATCTGAGAACCAGAGCGCACCAGACAACAAGCGCAGCTCAAGGAATTCAT
TGGAGAGCAGAAGCGAGACGTCATTTTCTGACCTTTCGTACGAGCTCCAA
GAGCTTGAGAATGTCATTCGTTCCGCACTCGACGATTTTGACCCCGAGCG
AGAAGACAAGTCGTACTTTCTGTGA

Coding sequence (CDS) from alignment at NODE_538_length_22627_cov_4.365637:10508..11932+

>Gcaud2027.t1 ID=Gcaud2027.t1|Name=Gcaud2027.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1425bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:10508..11932+ (Gracilaria caudata M_176_S67 male)
ATGAATTTCGTGCACACTGATGAGTTGCTTAGCTTAATGGCAGAGAAAAC
AGACGAACAAGAAGACTTCAGAACAATGCATGCTCGTTTAGACGAAGAAA
TAATATCCTCGATCTCATTTGCAGGACAAGCAGGGAGGGCTCAAACGCTG
AAACAATTTGAAAATAACACCCAAAGGGATGAAGTACATGCTCCCTTACA
CGACGACCTTTTAGACCCCATCTTACATGCAGCACACTCGGAAAACCTTC
AAAGACCAAGGGCCTTTGCTAGTGAAAAACGTGGAAAGAAGTCTTCCATT
GGGAAAAATCGTTTGTCTAAGCCTTCCCCCAAACCCAAAAGGTATAGTTT
GAAAGCTGATGACagaaggagaagaagcagaagaaATTCAAAACGTCAAG
AACCAGCAACAAGCGATCGCGAGAAGTGGACAGGGTTGGCGCAGAATCTT
CTAGCGTTAATGGGAGCATCCAGAAGAAGCAGGACAGATTTGGATTCTGA
TCAAATGAGAAGGAAAAGATCAACTTTCAGGAAGCAGGTAACTGCTCTCC
TTGTGCCGTTTTTCAAGAAACCAAAAGAGGCGGCAGTATTTCTTGCGACT
TTAGAGGCAAGAGAACTGTATTCAGAGGGACAAGTAAGTTCTTCACCAGA
ACAATGTAAGGCGAAACAAGCTGAAGGAGAAGGAAGTTGGAAAAAGGGAC
CTGGACTTAATCTTACGGGCAAAAACCATTCTGGTCAGAGTGATCGCTGT
GTTTCGAAGAACCCTGTCATGTGGAGCATGTTTTCTGTCGACTGGGAATC
TACGAGGGTGCAGAGACGAAGGGTAGCAAGAAAAAGGACAATACTGAAGC
AGGGACAAAGCGCCGATGGTGCGCTAAAGGAAAATATAGACGCTCAGCAG
ATAAACTCTCGTTCGCACCAGCCGGTTGTACCGAAAAAGAACAAAGCTGT
AGCAATGCGTCGCGAGAATGAGAGGCGACATTGGCGTGTTTTGAAAGACG
AAATGATTTCCATTATCTTGGAGAACATACGGATGATGGTGACCCTTAAA
AAGCTCTGCAGGCCAAGGCTTCTTGCCAAGCTTAGACAAGAAGCGACTGA
TTTGGGTATCGTTGAGTCTTTTAACAACTTCGCAAATACTTTACCTCTCA
ATACAGATATCAACAGCTGGCTTGGAAGCAACGATCAAGAGCCCGTGGCA
AATGCAGATGAAATCGTGCTCAGCTTTTTGCAATCGAATGAAAAGAATGC
ATCTGAGAACCAGAGCGCACCAGACAACAAGCGCAGCTCAAGGAATTCAT
TGGAGAGCAGAAGCGAGACGTCATTTTCTGACCTTTCGTACGAGCTCCAA
GAGCTTGAGAATGTCATTCGTTCCGCACTCGACGATTTTGACCCCGAGCG
AGAAGACAAGTCGTACTTTCTGTGA