Gcaud2024.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2024.t1
Unique Name	Gcaud2024.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	324

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_538_length_22627_cov_4.365637	contig	NODE_538_length_22627_cov_4.365637:2642..3613 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003289763.1
PFAMs	Mito_carr
Max annot lvl	554915\|Amoebozoa
KEGG ko	ko:K15105
KEGG TC	2.A.29.14.1,2.A.29.14.2,2.A.29.14.4
GOs	GO:0003333,GO:0003674,GO:0005215,GO:0005283,GO:0005310,GO:0005313,GO:0005314,GO:0005326,GO:0005328,GO:0005342,GO:0005343,GO:0005416,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006820,GO:0006835,GO:0006836,GO:0006839,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015077,GO:0015081,GO:0015171,GO:0015172,GO:0015179,GO:0015238,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015370,GO:0015501,GO:0015672,GO:0015711,GO:0015800,GO:0015807,GO:0015813,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0017153,GO:0019866,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0035725,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:1902475,GO:1903825,GO:1905039
Evalue	2.57e-61
EggNOG OGs	KOG0751@1\|root,KOG0751@2759\|Eukaryota,3XATR@554915\|Amoebozoa
Description	Mitochondrial carrier protein
COG category	C
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2024	Gcaud2024	Gracilaria caudata M_176_S67 male	gene	NODE_538_length_22627_cov_4.365637 2642..3613 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2024.t1.stop1	Gcaud2024.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_538_length_22627_cov_4.365637 2642..2644 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2024.t1.CDS1	Gcaud2024.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_538_length_22627_cov_4.365637 2642..3613 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2024.t1.exon1	Gcaud2024.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_538_length_22627_cov_4.365637 2642..3613 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2024.t1.start1	Gcaud2024.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_538_length_22627_cov_4.365637 3611..3613 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2024.t1	Gcaud2024.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_538_length_22627_cov_4.365637 2642..3613 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_538_length_22627_cov_4.365637:2642..3613-
coding sequence from alignment at NODE_538_length_22627_cov_4.365637:2642..3613-

mRNA sequence

>Gcaud2024.t1 ID=Gcaud2024.t1|Name=Gcaud2024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=324bp
MTKPSPQSSAAAHSGNKNLLQNILFGGVAGVIGQGSVYPLYTIRTHLQVS
PTKYTNFVQTGFKIARETGFRSLYRGLAPALVGVFPEKAIKLSVNDYLTA
VLSRPDGSISIPHAMIAGAGAGLTQVIATNPMEVMMINMQTSTLTMGRLI
SKLGISGLYKGVSATLLRDIPFSIVFFPMNTYLRLMFTDRDGTLPTPKVF
LAGILSGSTAAITSTPADVIKTNLQSINKKELPVSPAAPASPSAAQTIRP
AAPTPQSSRSMSSTAKPAAHFGIVQCAKSIYATRGIRGFFAGVGPRILTV
SPLFGVTMFMYEVQRRLKESGTL*

spliced messenger RNA

>Gcaud2024.t1 ID=Gcaud2024.t1|Name=Gcaud2024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:2642..3613- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAAGCCCTCCCCGCAGTCGTCCGCCGCCGCCCACTCCGGCAACAA
GAACCTGCTGCAGAACATCCTGTTCGGCGGCGTCGCCGGCGTGATTGGCC
AGGGCTCCGTGTATCCGCTATACACCATCCGCACTCACCTGCAGGTGAGC
CCGACTAAGTACACCAACTTCGTGCAGACCGGCTTCAAGATAGCGCGTGA
AACCGGCTTTAGATCGCTCTACCGTGGTCTTGCCCCGGCTCTCGTGGGCG
TATTTCCCGAGAAGGCAATAAAGCTCTCTGTTAATGACTACCTTACCGCC
GTCTTGTCGCGCCCCGACGGATCCATATCCATACCCCACGCCATGATCGC
CGGCGCTGGCGCCGGTTTGACTCAGGTCATCGCCACTAACCCCATGGAAG
TGATGATGATCAATATGCAAACTTCAACGCTGACAATGGGGCGTCTCATC
TCGAAGCTTGGTATAAGCGGCCTCTACAAGGGCGTCTCGGCCACCTTGCT
ACGTGACATCCCCTTCAGCATCGTGTTCTTCCCCATGAACACCTACCTAC
GCCTCATGTTCACTGATCGCGATGGCACCTTGCCAACACCCAAGGTCTTC
CTGGCAGGAATTCTATCCGGATCCACCGCCGCTATTACGTCTACACCGGC
CGATGTCATTAAGACCAACCTGCAGTCCATCAATAAAAAGGAGTTGCCCG
TATCTCCCGCCGCACCCGCATCACCGTCCGCCGCGCAGACCATCCGCCCG
GCAGCTCCCACTCCGCAGTCCTCGCGATCTATGTCATCCACCGCAAAACC
CGCCGCCCACTTCGGAATTGTCCAGTGTGCCAAGTCCATCTACGCCACAC
GCGGCATTCGCGGCTTCTTTGCAGGTGTCGGTCCGCGTATACTCACTGTG
TCCCCATTGTTCGGGGTCACCATGTTCATGTACGAGGTCCAGCGTCGTCT
TAAGGAATCCGGAACACTCTGA

protein sequence of Gcaud2024.t1

>Gcaud2024.t1 ID=Gcaud2024.t1|Name=Gcaud2024.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=324bp
MTKPSPQSSAAAHSGNKNLLQNILFGGVAGVIGQGSVYPLYTIRTHLQVS
PTKYTNFVQTGFKIARETGFRSLYRGLAPALVGVFPEKAIKLSVNDYLTA
VLSRPDGSISIPHAMIAGAGAGLTQVIATNPMEVMMINMQTSTLTMGRLI
SKLGISGLYKGVSATLLRDIPFSIVFFPMNTYLRLMFTDRDGTLPTPKVF
LAGILSGSTAAITSTPADVIKTNLQSINKKELPVSPAAPASPSAAQTIRP
AAPTPQSSRSMSSTAKPAAHFGIVQCAKSIYATRGIRGFFAGVGPRILTV
SPLFGVTMFMYEVQRRLKESGTL*

mRNA from alignment at NODE_538_length_22627_cov_4.365637:2642..3613-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2024.t1 ID=Gcaud2024.t1|Name=Gcaud2024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:2642..3613- (Gracilaria caudata M_176_S67 male)
ATGACCAAGCCCTCCCCGCAGTCGTCCGCCGCCGCCCACTCCGGCAACAA
GAACCTGCTGCAGAACATCCTGTTCGGCGGCGTCGCCGGCGTGATTGGCC
AGGGCTCCGTGTATCCGCTATACACCATCCGCACTCACCTGCAGGTGAGC
CCGACTAAGTACACCAACTTCGTGCAGACCGGCTTCAAGATAGCGCGTGA
AACCGGCTTTAGATCGCTCTACCGTGGTCTTGCCCCGGCTCTCGTGGGCG
TATTTCCCGAGAAGGCAATAAAGCTCTCTGTTAATGACTACCTTACCGCC
GTCTTGTCGCGCCCCGACGGATCCATATCCATACCCCACGCCATGATCGC
CGGCGCTGGCGCCGGTTTGACTCAGGTCATCGCCACTAACCCCATGGAAG
TGATGATGATCAATATGCAAACTTCAACGCTGACAATGGGGCGTCTCATC
TCGAAGCTTGGTATAAGCGGCCTCTACAAGGGCGTCTCGGCCACCTTGCT
ACGTGACATCCCCTTCAGCATCGTGTTCTTCCCCATGAACACCTACCTAC
GCCTCATGTTCACTGATCGCGATGGCACCTTGCCAACACCCAAGGTCTTC
CTGGCAGGAATTCTATCCGGATCCACCGCCGCTATTACGTCTACACCGGC
CGATGTCATTAAGACCAACCTGCAGTCCATCAATAAAAAGGAGTTGCCCG
TATCTCCCGCCGCACCCGCATCACCGTCCGCCGCGCAGACCATCCGCCCG
GCAGCTCCCACTCCGCAGTCCTCGCGATCTATGTCATCCACCGCAAAACC
CGCCGCCCACTTCGGAATTGTCCAGTGTGCCAAGTCCATCTACGCCACAC
GCGGCATTCGCGGCTTCTTTGCAGGTGTCGGTCCGCGTATACTCACTGTG
TCCCCATTGTTCGGGGTCACCATGTTCATGTACGAGGTCCAGCGTCGTCT
TAAGGAATCCGGAACACTCTGA

Coding sequence (CDS) from alignment at NODE_538_length_22627_cov_4.365637:2642..3613-

>Gcaud2024.t1 ID=Gcaud2024.t1|Name=Gcaud2024.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=972bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:2642..3613- (Gracilaria caudata M_176_S67 male)
ATGACCAAGCCCTCCCCGCAGTCGTCCGCCGCCGCCCACTCCGGCAACAA
GAACCTGCTGCAGAACATCCTGTTCGGCGGCGTCGCCGGCGTGATTGGCC
AGGGCTCCGTGTATCCGCTATACACCATCCGCACTCACCTGCAGGTGAGC
CCGACTAAGTACACCAACTTCGTGCAGACCGGCTTCAAGATAGCGCGTGA
AACCGGCTTTAGATCGCTCTACCGTGGTCTTGCCCCGGCTCTCGTGGGCG
TATTTCCCGAGAAGGCAATAAAGCTCTCTGTTAATGACTACCTTACCGCC
GTCTTGTCGCGCCCCGACGGATCCATATCCATACCCCACGCCATGATCGC
CGGCGCTGGCGCCGGTTTGACTCAGGTCATCGCCACTAACCCCATGGAAG
TGATGATGATCAATATGCAAACTTCAACGCTGACAATGGGGCGTCTCATC
TCGAAGCTTGGTATAAGCGGCCTCTACAAGGGCGTCTCGGCCACCTTGCT
ACGTGACATCCCCTTCAGCATCGTGTTCTTCCCCATGAACACCTACCTAC
GCCTCATGTTCACTGATCGCGATGGCACCTTGCCAACACCCAAGGTCTTC
CTGGCAGGAATTCTATCCGGATCCACCGCCGCTATTACGTCTACACCGGC
CGATGTCATTAAGACCAACCTGCAGTCCATCAATAAAAAGGAGTTGCCCG
TATCTCCCGCCGCACCCGCATCACCGTCCGCCGCGCAGACCATCCGCCCG
GCAGCTCCCACTCCGCAGTCCTCGCGATCTATGTCATCCACCGCAAAACC
CGCCGCCCACTTCGGAATTGTCCAGTGTGCCAAGTCCATCTACGCCACAC
GCGGCATTCGCGGCTTCTTTGCAGGTGTCGGTCCGCGTATACTCACTGTG
TCCCCATTGTTCGGGGTCACCATGTTCATGTACGAGGTCCAGCGTCGTCT
TAAGGAATCCGGAACACTCTGA