Gcaud2023.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2023.t1
Unique Name	Gcaud2023.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	302

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_538_length_22627_cov_4.365637	contig	NODE_538_length_22627_cov_4.365637:1554..2459 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMR088CT
PFAMs	PGAP1
Max annot lvl	2759\|Eukaryota
Evalue	2.01e-57
EggNOG OGs	COG1075@1\|root,2QS8K@2759\|Eukaryota
Description	Alpha beta-Hydrolases superfamily protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2023	Gcaud2023	Gracilaria caudata M_176_S67 male	gene	NODE_538_length_22627_cov_4.365637 1554..2459 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2023.t1.start1	Gcaud2023.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_538_length_22627_cov_4.365637 1554..1556 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2023.t1.CDS1	Gcaud2023.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_538_length_22627_cov_4.365637 1554..2459 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2023.t1.exon1	Gcaud2023.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_538_length_22627_cov_4.365637 1554..2459 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2023.t1.stop1	Gcaud2023.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_538_length_22627_cov_4.365637 2457..2459 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2023.t1	Gcaud2023.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_538_length_22627_cov_4.365637 1554..2459 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_538_length_22627_cov_4.365637:1554..2459+
coding sequence from alignment at NODE_538_length_22627_cov_4.365637:1554..2459+

mRNA sequence

>Gcaud2023.t1 ID=Gcaud2023.t1|Name=Gcaud2023.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=302bp
MKLDPAFVCAPSIAKQCVSRSSKVVKRDNGPRNHNVLQRRRVSMTSAEAG
QTTVSEQTEVCYAPVLILPGLGNASSDYTKLSHKLLGRGHQSVSVVPMRR
WQWGQNAKGFLQKDYWTSTLTPDSVLDWYFNRVDKAVTQLMGKTEGAKLN
MVGHSAGGWLARAYIAERAPEGLQVSTLLTLGTPNRGPPAGTLDQTRGLL
RYVEERCDVSRLVTQFVCVAGTGTVGKQFGKGSVSELVAYLSYAAVCGRG
DVDGDGVTPVEAACAKNAELVLCEDCDHSMLTSQKWYGSDSAFSNWAEYL
C*

spliced messenger RNA

>Gcaud2023.t1 ID=Gcaud2023.t1|Name=Gcaud2023.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=906bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:1554..2459+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACTGGACCCCGCTTTTGTATGTGCTCCCAGCATTGCGAAACAATG
TGTCTCTCGCTCTTCCAAGGTTGTGAAACGAGATAACGGACCGCGCAATC
ACAATGTGCTGCAACGTCGACGTGTGTCGATGACAAGCGCTGAGGCTGGT
CAAACGACCGTGTCCGAACAAACGGAAGTTTGCTACGCCCCAGTTCTGAT
CCTGCCCGGACTTGGAAATGCAAGTTCCGACTACACAAAGTTGTCGCACA
AACTTTTGGGGAGAGGACACCAATCAGTGTCAGTGGTTCCGATGCGGCGG
TGGCAATGGGGCCAAAACGCCAAGGGCTTCCTTCAGAAGGACTACTGGAC
GTCTACGCTAACCCCTGATTCAGTACTGGATTGGTACTTCAACAGAGTCG
ATAAGGCCGTCACGCAGCTGATGGGCAAGACTGAAGGAGCGAAGCTCAAC
ATGGTTGGCCACAGCGCTGGCGGATGGCTGGCGAGAGCGTACATTGCGGA
ACGCGCTCCAGAGGGATTGCAAGTATCTACGTTGCTCACACTGGGCACGC
CGAACCGTGGCCCACCTGCCGGCACGTTGGATCAAACAAGAGGTCTTCTT
CGATATGTTGAGGAACGATGCGACGTTTCCAGGCTGGTCACGCAGTTTGT
ATGCGTGGCCGGAACAGGAACAGTTGGAAAGCAGTTTGGCAAAGGTTCCG
TTTCAGAACTGGTGGCGTATCTGAGCTACGCCGCTGTGTGTGGACGAGGA
GATGTGGATGGAGATGGTGTGACACCTGTTGAGGCGGCATGCGCGAAGAA
TGCGGAGCTTGTGCTGTGCGAAGATTGCGACCATTCCATGTTAACCAGCC
AAAAGTGGTATGGTAGTGACAGTGCGTTTTCAAATTGGGCAGAGTATCTC
TGTTGA

protein sequence of Gcaud2023.t1

>Gcaud2023.t1 ID=Gcaud2023.t1|Name=Gcaud2023.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=302bp
MKLDPAFVCAPSIAKQCVSRSSKVVKRDNGPRNHNVLQRRRVSMTSAEAG
QTTVSEQTEVCYAPVLILPGLGNASSDYTKLSHKLLGRGHQSVSVVPMRR
WQWGQNAKGFLQKDYWTSTLTPDSVLDWYFNRVDKAVTQLMGKTEGAKLN
MVGHSAGGWLARAYIAERAPEGLQVSTLLTLGTPNRGPPAGTLDQTRGLL
RYVEERCDVSRLVTQFVCVAGTGTVGKQFGKGSVSELVAYLSYAAVCGRG
DVDGDGVTPVEAACAKNAELVLCEDCDHSMLTSQKWYGSDSAFSNWAEYL
C*

mRNA from alignment at NODE_538_length_22627_cov_4.365637:1554..2459+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2023.t1 ID=Gcaud2023.t1|Name=Gcaud2023.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=906bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:1554..2459+ (Gracilaria caudata M_176_S67 male)
ATGAAACTGGACCCCGCTTTTGTATGTGCTCCCAGCATTGCGAAACAATG
TGTCTCTCGCTCTTCCAAGGTTGTGAAACGAGATAACGGACCGCGCAATC
ACAATGTGCTGCAACGTCGACGTGTGTCGATGACAAGCGCTGAGGCTGGT
CAAACGACCGTGTCCGAACAAACGGAAGTTTGCTACGCCCCAGTTCTGAT
CCTGCCCGGACTTGGAAATGCAAGTTCCGACTACACAAAGTTGTCGCACA
AACTTTTGGGGAGAGGACACCAATCAGTGTCAGTGGTTCCGATGCGGCGG
TGGCAATGGGGCCAAAACGCCAAGGGCTTCCTTCAGAAGGACTACTGGAC
GTCTACGCTAACCCCTGATTCAGTACTGGATTGGTACTTCAACAGAGTCG
ATAAGGCCGTCACGCAGCTGATGGGCAAGACTGAAGGAGCGAAGCTCAAC
ATGGTTGGCCACAGCGCTGGCGGATGGCTGGCGAGAGCGTACATTGCGGA
ACGCGCTCCAGAGGGATTGCAAGTATCTACGTTGCTCACACTGGGCACGC
CGAACCGTGGCCCACCTGCCGGCACGTTGGATCAAACAAGAGGTCTTCTT
CGATATGTTGAGGAACGATGCGACGTTTCCAGGCTGGTCACGCAGTTTGT
ATGCGTGGCCGGAACAGGAACAGTTGGAAAGCAGTTTGGCAAAGGTTCCG
TTTCAGAACTGGTGGCGTATCTGAGCTACGCCGCTGTGTGTGGACGAGGA
GATGTGGATGGAGATGGTGTGACACCTGTTGAGGCGGCATGCGCGAAGAA
TGCGGAGCTTGTGCTGTGCGAAGATTGCGACCATTCCATGTTAACCAGCC
AAAAGTGGTATGGTAGTGACAGTGCGTTTTCAAATTGGGCAGAGTATCTC
TGTTGA

Coding sequence (CDS) from alignment at NODE_538_length_22627_cov_4.365637:1554..2459+

>Gcaud2023.t1 ID=Gcaud2023.t1|Name=Gcaud2023.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=906bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:1554..2459+ (Gracilaria caudata M_176_S67 male)
ATGAAACTGGACCCCGCTTTTGTATGTGCTCCCAGCATTGCGAAACAATG
TGTCTCTCGCTCTTCCAAGGTTGTGAAACGAGATAACGGACCGCGCAATC
ACAATGTGCTGCAACGTCGACGTGTGTCGATGACAAGCGCTGAGGCTGGT
CAAACGACCGTGTCCGAACAAACGGAAGTTTGCTACGCCCCAGTTCTGAT
CCTGCCCGGACTTGGAAATGCAAGTTCCGACTACACAAAGTTGTCGCACA
AACTTTTGGGGAGAGGACACCAATCAGTGTCAGTGGTTCCGATGCGGCGG
TGGCAATGGGGCCAAAACGCCAAGGGCTTCCTTCAGAAGGACTACTGGAC
GTCTACGCTAACCCCTGATTCAGTACTGGATTGGTACTTCAACAGAGTCG
ATAAGGCCGTCACGCAGCTGATGGGCAAGACTGAAGGAGCGAAGCTCAAC
ATGGTTGGCCACAGCGCTGGCGGATGGCTGGCGAGAGCGTACATTGCGGA
ACGCGCTCCAGAGGGATTGCAAGTATCTACGTTGCTCACACTGGGCACGC
CGAACCGTGGCCCACCTGCCGGCACGTTGGATCAAACAAGAGGTCTTCTT
CGATATGTTGAGGAACGATGCGACGTTTCCAGGCTGGTCACGCAGTTTGT
ATGCGTGGCCGGAACAGGAACAGTTGGAAAGCAGTTTGGCAAAGGTTCCG
TTTCAGAACTGGTGGCGTATCTGAGCTACGCCGCTGTGTGTGGACGAGGA
GATGTGGATGGAGATGGTGTGACACCTGTTGAGGCGGCATGCGCGAAGAA
TGCGGAGCTTGTGCTGTGCGAAGATTGCGACCATTCCATGTTAACCAGCC
AAAAGTGGTATGGTAGTGACAGTGCGTTTTCAAATTGGGCAGAGTATCTC
TGTTGA