Gcaud2022.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2022.t1
Unique NameGcaud2022.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length14
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_538_length_22627_cov_4.365637contigNODE_538_length_22627_cov_4.365637:2..144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2022Gcaud2022Gracilaria caudata M_176_S67 malegeneNODE_538_length_22627_cov_4.365637 2..144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2022.t1Gcaud2022.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_538_length_22627_cov_4.365637 2..144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2022.t1.CDS1Gcaud2022.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_538_length_22627_cov_4.365637 2..19 +
Gcaud2022.t1.CDS2Gcaud2022.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_538_length_22627_cov_4.365637 123..144 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2022.t1.exon1Gcaud2022.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_538_length_22627_cov_4.365637 2..19 +
Gcaud2022.t1.exon2Gcaud2022.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_538_length_22627_cov_4.365637 123..144 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2022.t1.intron1Gcaud2022.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_538_length_22627_cov_4.365637 20..122 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2022.t1.stop1Gcaud2022.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_538_length_22627_cov_4.365637 142..144 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2022.t1 ID=Gcaud2022.t1|Name=Gcaud2022.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=14bp
XSEWGDRRYGQSS*
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spliced messenger RNA

>Gcaud2022.t1 ID=Gcaud2022.t1|Name=Gcaud2022.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=40bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:2..144+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GTCCGAATGGGGCGATCGCCGGTATGGACAGTCTTCCTAG
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protein sequence of Gcaud2022.t1

>Gcaud2022.t1 ID=Gcaud2022.t1|Name=Gcaud2022.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=14bp
XSEWGDRRYGQSS*
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mRNA from alignment at NODE_538_length_22627_cov_4.365637:2..144+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2022.t1 ID=Gcaud2022.t1|Name=Gcaud2022.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=143bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:2..144+ (Gracilaria caudata M_176_S67 male)
GTCCGAATGGGGCGATCGGTAAGCTTTCTCATCCCGTCTCCAATCGTGCA
GCGTGCGGCGTACGTGCTGACAAAGCTGTTTGTTCTTCTATGCGTTTTTT
TTTTTTGTTTTCGCTCAACAGCCGGTATGGACAGTCTTCCTAG
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Coding sequence (CDS) from alignment at NODE_538_length_22627_cov_4.365637:2..144+

>Gcaud2022.t1 ID=Gcaud2022.t1|Name=Gcaud2022.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=40bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:2..144+ (Gracilaria caudata M_176_S67 male)
GTCCGAATGGGGCGATCGCCGGTATGGACAGTCTTCCTAG
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