Gcaud2020.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2020.t1
Unique NameGcaud2020.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length756
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1148_length_13309_cov_4.323498contigNODE_1148_length_13309_cov_4.323498:7769..10297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_002734747.1
PFAMsGRDP-like
Max annot lvl33208|Metazoa
Evalue1e-50
EggNOG OGs28JC1@1|root,2QRQZ@2759|Eukaryota,38E6R@33154|Opisthokonta,3BHPZ@33208|Metazoa,3D58M@33213|Bilateria
DescriptionGlycine-rich domain-containing protein-like
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2020Gcaud2020Gracilaria caudata M_176_S67 malegeneNODE_1148_length_13309_cov_4.323498 7769..10297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2020.t1Gcaud2020.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1148_length_13309_cov_4.323498 7769..10297 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2020.t1.start1Gcaud2020.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1148_length_13309_cov_4.323498 7769..7771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2020.t1.CDS1Gcaud2020.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1148_length_13309_cov_4.323498 7769..9890 +
Gcaud2020.t1.CDS2Gcaud2020.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1148_length_13309_cov_4.323498 10152..10297 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2020.t1.exon1Gcaud2020.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1148_length_13309_cov_4.323498 7769..9890 +
Gcaud2020.t1.exon2Gcaud2020.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1148_length_13309_cov_4.323498 10152..10297 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2020.t1.intron1Gcaud2020.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1148_length_13309_cov_4.323498 9891..10151 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2020.t1.stop1Gcaud2020.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1148_length_13309_cov_4.323498 10295..10297 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2020.t1 ID=Gcaud2020.t1|Name=Gcaud2020.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=756bp
MNLLAFNLDGRKSKAKRGLASSVKALVSVLNEVDEYPALYFNHLVLREAI
RRYEHLWIPLLANAKPKQRLRLVPPLDVEWVWFCHMLCPAKYATDCAAMW
QAVRPNEPDFILDHVLLGPKKRLAGKLEAEQLWRQMFPHEPFDNTDAIKD
APMQVPMKRGSASEASRISYNIVAAAERQMVFQYQVGIMPQYEENSFLRS
AVRRYKKFLKLQQMQPDKIWVPTYDIDVCWHAHMMHPRWYHSNTVKLKGS
VLKHDDTLNDRATGSELNQRWNATASTWKQLFSSPVHFAGGMWRGNVETS
ERVQRPALVESIVALQADCASPANAEYKVWDADMSALDLSAGLDWVHMTE
WRRKNEPADRSSPCSTQNKVERFTCLGQETGDAGILLSRTIHFLMYKNDG
SNAEPTRFASVVEVFGAKPSSEKPGYPLATAHHVLPNSICGWESSQVPAR
RCAASATETVFVLRVGGEDFGLIAGEWYGFEPPRKGVPGIPGSRGGREWG
VPGIPGTRGDPGHLNLRLWLLGAKTRRRWINLRPVGQKKQPLSYSLELPS
LSVAGGIAAGEVGFSLQNATVRVSDRSQLLIAYLISTAAAALFTTLQPRF
IPRGGAIVDSHETMYPAWSVQQKDYATVRGAGGEVPTEQGNQGLGMMLLA
LQKSAWDCLDFPGSPKREFRLVRAKADAKAKEGPIEHSPMFGGIVDEIGS
PEGTDGCGQFVWLRYVIARAGEKLIETGYGQVVNLAELELSDVLKPAQFL
VSQLA*
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spliced messenger RNA

>Gcaud2020.t1 ID=Gcaud2020.t1|Name=Gcaud2020.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2268bp|location=Sequence derived from alignment at NODE_1148_length_13309_cov_4.323498:7769..10297+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCTCCTGGCTTTTAACCTGGATGGACGCAAATCGAAGGCAAAGCG
AGGTCTGGCGTCGTCTGTGAAGGCGTTAGTGTCTGTTCTCAATGAAGTCG
ATGAGTACCCGGCTTTGTATTTCAACCACCTCGTGTTGCGGGAGGCCATC
CGCCGCTATGAACATTTATGGATTCCCCTTCTTGCCAATGCCAAGCCCAA
GCAACGCCTGCGTCTCGTTCCGCCGCTTGACGTTGAATGGGTTTGGTTCT
GCCACATGCTCTGTCCGGCCAAATACGCCACTGACTGTGCCGCCATGTGG
CAGGCCGTGCGCCCTAACGAGCCTGATTTCATTTTAGACCATGTGCTTCT
GGGGCCGAAGAAGAGACTGGCCGGAAAATTGGAGGCTGAACAATTGTGGC
GACAGATGTTTCCACACGAGCCTTTCGACAACACGGATGCAATCAAGGAC
GCACCCATGCAAGTGCCCATGAAGCGTGGCTCCGCCTCAGAAGCGTCCCG
CATCTCGTACAATATCGTGGCCGCAGCGGAAAGGCAGATGGTGTTCCAGT
ATCAGGTCGGCATCATGCCGCAATATGAAGAGAACAGCTTTCTGCGGTCC
GCTGTCCGCCGATACAAAAAGTTTCTCAAACTGCAACAGATGCAACCGGA
TAAGATTTGGGTTCCAACATATGATATCGACGTGTGCTGGCACGCTCATA
TGATGCACCCACGTTGGTATCATAGCAACACCGTGAAATTGAAGGGATCA
GTACTGAAACATGATGACACGCTCAACGATAGAGCAACGGGATCCGAGCT
CAACCAGAGGTGGAATGCGACCGCGAGTACATGGAAACAGCTTTTCTCTT
CTCCAGTGCACTTTGCAGGTGGAATGTGGCGGGGAAACGTTGAAACCTCG
GAAAGAGTACAACGACCGGCTCTCGTTGAGAGCATTGTTGCTCTGCAGGC
GGATTGTGCTTCACCAGCAAATGCCGAGTACAAAGTGTGGGATGCTGACA
TGAGCGCATTGGATCTAAGCGCCGGCTTGGACTGGGTTCACATGACAGAG
TGGCGTAGGAAGAATGAGCCTGCGGATCGTAGCAGCCCATGCAGTACCCA
AAACAAAGTGGAACGCTTCACCTGCCTCGGACAAGAAACAGGAGATGCAG
GTATTCTCTTGAGTCGAACGATACATTTTCTGATGTACAAGAATGACGGC
TCCAATGCTGAACCAACCCGTTTTGCCTCTGTAGTGGAGGTGTTCGGAGC
GAAGCCATCTTCAGAGAAACCAGGATACCCGCTCGCAACAGCGCACCATG
TGCTTCCCAACAGTATATGCGGTTGGGAATCGTCCCAAGTCCCGGCTCGC
AGATGTGCTGCATCCGCCACAGAAACTGTTTTTGTTTTGAGGGTTGGCGG
AGAGGACTTTGGCCTCATTGCAGGAGAATGGTATGGTTTTGAACCTCCTC
GGAAAGGGGTTCCTGGAATTCCAGGTAGCAGGGGTGGAAGAGAATGGGGG
GTGCCTGGTATTCCAGGAACGAGGGGAGATCCGGGGCATCTGAATCTGCG
CTTATGGTTACTTGGTGCGAAAACTCGAAGGAGATGGATCAACTTGAGGC
CCGTAGGCCAGAAAAAGCAGCCTCTGTCTTATTCGCTTGAGCTTCCCTCC
CTCTCTGTAGCAGGAGGCATCGCAGCAGGTGAAGTGGGCTTCAGTCTCCA
AAATGCAACAGTGCGTGTGAGTGATAGGAGCCAGCTGCTGATAGCATATC
TGATAAGCACAGCAGCAGCAGCGCTGTTCACAACACTGCAGCCGAGGTTC
ATTCCTCGTGGCGGTGCGATTGTTGATAGCCATGAAACCATGTATCCCGC
TTGGTCAGTGCAGCAGAAAGATTATGCCACGGTTCGGGGAGCCGGTGGGG
AAGTACCCACCGAGCAGGGTAACCAAGGCTTGGGAATGATGCTTCTCGCA
TTGCAGAAAAGCGCGTGGGACTGTCTCGACTTCCCAGGGTCTCCGAAGCG
GGAGTTCAGGCTCGTCAGGGCTAAAGCGGATGCAAAAGCGAAGGAAGGCC
CAATTGAGCACAGTCCCATGTTCGGTGGTATTGTGGATGAGATCGGCAGT
CCTGAGGGGACTGATGGCTGTGGGCAGTTTGTGTGGCTGAGGTATGTGAT
TGCGCGTGCTGGAGAGAAGCTTATTGAGACCGGATACGGGCAGGTGGTGA
ACCTTGCGGAGCTGGAGTTGTCGGACGTGCTGAAGCCTGCCCAATTCCTA
GTCTCACAGTTGGCGTAG
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protein sequence of Gcaud2020.t1

>Gcaud2020.t1 ID=Gcaud2020.t1|Name=Gcaud2020.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=756bp
MNLLAFNLDGRKSKAKRGLASSVKALVSVLNEVDEYPALYFNHLVLREAI
RRYEHLWIPLLANAKPKQRLRLVPPLDVEWVWFCHMLCPAKYATDCAAMW
QAVRPNEPDFILDHVLLGPKKRLAGKLEAEQLWRQMFPHEPFDNTDAIKD
APMQVPMKRGSASEASRISYNIVAAAERQMVFQYQVGIMPQYEENSFLRS
AVRRYKKFLKLQQMQPDKIWVPTYDIDVCWHAHMMHPRWYHSNTVKLKGS
VLKHDDTLNDRATGSELNQRWNATASTWKQLFSSPVHFAGGMWRGNVETS
ERVQRPALVESIVALQADCASPANAEYKVWDADMSALDLSAGLDWVHMTE
WRRKNEPADRSSPCSTQNKVERFTCLGQETGDAGILLSRTIHFLMYKNDG
SNAEPTRFASVVEVFGAKPSSEKPGYPLATAHHVLPNSICGWESSQVPAR
RCAASATETVFVLRVGGEDFGLIAGEWYGFEPPRKGVPGIPGSRGGREWG
VPGIPGTRGDPGHLNLRLWLLGAKTRRRWINLRPVGQKKQPLSYSLELPS
LSVAGGIAAGEVGFSLQNATVRVSDRSQLLIAYLISTAAAALFTTLQPRF
IPRGGAIVDSHETMYPAWSVQQKDYATVRGAGGEVPTEQGNQGLGMMLLA
LQKSAWDCLDFPGSPKREFRLVRAKADAKAKEGPIEHSPMFGGIVDEIGS
PEGTDGCGQFVWLRYVIARAGEKLIETGYGQVVNLAELELSDVLKPAQFL
VSQLA*
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mRNA from alignment at NODE_1148_length_13309_cov_4.323498:7769..10297+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2020.t1 ID=Gcaud2020.t1|Name=Gcaud2020.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2529bp|location=Sequence derived from alignment at NODE_1148_length_13309_cov_4.323498:7769..10297+ (Gracilaria caudata M_176_S67 male)
ATGAACCTCCTGGCTTTTAACCTGGATGGACGCAAATCGAAGGCAAAGCG AGGTCTGGCGTCGTCTGTGAAGGCGTTAGTGTCTGTTCTCAATGAAGTCG ATGAGTACCCGGCTTTGTATTTCAACCACCTCGTGTTGCGGGAGGCCATC CGCCGCTATGAACATTTATGGATTCCCCTTCTTGCCAATGCCAAGCCCAA GCAACGCCTGCGTCTCGTTCCGCCGCTTGACGTTGAATGGGTTTGGTTCT GCCACATGCTCTGTCCGGCCAAATACGCCACTGACTGTGCCGCCATGTGG CAGGCCGTGCGCCCTAACGAGCCTGATTTCATTTTAGACCATGTGCTTCT GGGGCCGAAGAAGAGACTGGCCGGAAAATTGGAGGCTGAACAATTGTGGC GACAGATGTTTCCACACGAGCCTTTCGACAACACGGATGCAATCAAGGAC GCACCCATGCAAGTGCCCATGAAGCGTGGCTCCGCCTCAGAAGCGTCCCG CATCTCGTACAATATCGTGGCCGCAGCGGAAAGGCAGATGGTGTTCCAGT ATCAGGTCGGCATCATGCCGCAATATGAAGAGAACAGCTTTCTGCGGTCC GCTGTCCGCCGATACAAAAAGTTTCTCAAACTGCAACAGATGCAACCGGA TAAGATTTGGGTTCCAACATATGATATCGACGTGTGCTGGCACGCTCATA TGATGCACCCACGTTGGTATCATAGCAACACCGTGAAATTGAAGGGATCA GTACTGAAACATGATGACACGCTCAACGATAGAGCAACGGGATCCGAGCT CAACCAGAGGTGGAATGCGACCGCGAGTACATGGAAACAGCTTTTCTCTT CTCCAGTGCACTTTGCAGGTGGAATGTGGCGGGGAAACGTTGAAACCTCG GAAAGAGTACAACGACCGGCTCTCGTTGAGAGCATTGTTGCTCTGCAGGC GGATTGTGCTTCACCAGCAAATGCCGAGTACAAAGTGTGGGATGCTGACA TGAGCGCATTGGATCTAAGCGCCGGCTTGGACTGGGTTCACATGACAGAG TGGCGTAGGAAGAATGAGCCTGCGGATCGTAGCAGCCCATGCAGTACCCA AAACAAAGTGGAACGCTTCACCTGCCTCGGACAAGAAACAGGAGATGCAG GTATTCTCTTGAGTCGAACGATACATTTTCTGATGTACAAGAATGACGGC TCCAATGCTGAACCAACCCGTTTTGCCTCTGTAGTGGAGGTGTTCGGAGC GAAGCCATCTTCAGAGAAACCAGGATACCCGCTCGCAACAGCGCACCATG TGCTTCCCAACAGTATATGCGGTTGGGAATCGTCCCAAGTCCCGGCTCGC AGATGTGCTGCATCCGCCACAGAAACTGTTTTTGTTTTGAGGGTTGGCGG AGAGGACTTTGGCCTCATTGCAGGAGAATGGTATGGTTTTGAACCTCCTC GGAAAGGGGTTCCTGGAATTCCAGGTAGCAGGGGTGGAAGAGAATGGGGG GTGCCTGGTATTCCAGGAACGAGGGGAGATCCGGGGCATCTGAATCTGCG CTTATGGTTACTTGGTGCGAAAACTCGAAGGAGATGGATCAACTTGAGGC CCGTAGGCCAGAAAAAGCAGCCTCTGTCTTATTCGCTTGAGCTTCCCTCC CTCTCTGTAGCAGGAGGCATCGCAGCAGGTGAAGTGGGCTTCAGTCTCCA AAATGCAACAGTGCGTGTGAGTGATAGGAGCCAGCTGCTGATAGCATATC TGATAAGCACAGCAGCAGCAGCGCTGTTCACAACACTGCAGCCGAGGTTC ATTCCTCGTGGCGGTGCGATTGTTGATAGCCATGAAACCATGTATCCCGC TTGGTCAGTGCAGCAGAAAGATTATGCCACGGTTCGGGGAGCCGGTGGGG AAGTACCCACCGAGCAGGGTAACCAAGGCTTGGGAATGATGCTTCTCGCA TTGCAGAAAAGCGCGTGGGACTGTCTCGACTTCCCAGGGTCTCCGAAGCG GGAGTTCAGGCTCGTCAGGGCTAAAGCGGATGCAAAAGCGAAGGAAGGCC CAATTGAGCACAGTCCCATGTTCGGTGGTATTGTGGATGAGATCGGCAGT CCTGAGGGGACTGATGGCTGTGGTGGTTGTGGAGGTTgcgggggttgtgg aggctgcggtggttgtgggggatgcggcggcggcgtcggtgcagctgggg gctgtggcggcggcggcggcggctgcggcTGTTGATCTTCGACCGATCAT CGGTGGTGAGCCAACTCAGTCAATAACAAACACAGAATCAGCTACACGGT GGACCGGTCCGCCGTACAGACGACGCAGTGCGATGGGGATGGTGGCAGTG TGAGCCTGACCAGTTTGAGCGTCAATTTGGAAGGGCAGTTTGTGTGGCTG AGGTATGTGATTGCGCGTGCTGGAGAGAAGCTTATTGAGACCGGATACGG GCAGGTGGTGAACCTTGCGGAGCTGGAGTTGTCGGACGTGCTGAAGCCTG CCCAATTCCTAGTCTCACAGTTGGCGTAG
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Coding sequence (CDS) from alignment at NODE_1148_length_13309_cov_4.323498:7769..10297+

>Gcaud2020.t1 ID=Gcaud2020.t1|Name=Gcaud2020.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2268bp|location=Sequence derived from alignment at NODE_1148_length_13309_cov_4.323498:7769..10297+ (Gracilaria caudata M_176_S67 male)
ATGAACCTCCTGGCTTTTAACCTGGATGGACGCAAATCGAAGGCAAAGCG
AGGTCTGGCGTCGTCTGTGAAGGCGTTAGTGTCTGTTCTCAATGAAGTCG
ATGAGTACCCGGCTTTGTATTTCAACCACCTCGTGTTGCGGGAGGCCATC
CGCCGCTATGAACATTTATGGATTCCCCTTCTTGCCAATGCCAAGCCCAA
GCAACGCCTGCGTCTCGTTCCGCCGCTTGACGTTGAATGGGTTTGGTTCT
GCCACATGCTCTGTCCGGCCAAATACGCCACTGACTGTGCCGCCATGTGG
CAGGCCGTGCGCCCTAACGAGCCTGATTTCATTTTAGACCATGTGCTTCT
GGGGCCGAAGAAGAGACTGGCCGGAAAATTGGAGGCTGAACAATTGTGGC
GACAGATGTTTCCACACGAGCCTTTCGACAACACGGATGCAATCAAGGAC
GCACCCATGCAAGTGCCCATGAAGCGTGGCTCCGCCTCAGAAGCGTCCCG
CATCTCGTACAATATCGTGGCCGCAGCGGAAAGGCAGATGGTGTTCCAGT
ATCAGGTCGGCATCATGCCGCAATATGAAGAGAACAGCTTTCTGCGGTCC
GCTGTCCGCCGATACAAAAAGTTTCTCAAACTGCAACAGATGCAACCGGA
TAAGATTTGGGTTCCAACATATGATATCGACGTGTGCTGGCACGCTCATA
TGATGCACCCACGTTGGTATCATAGCAACACCGTGAAATTGAAGGGATCA
GTACTGAAACATGATGACACGCTCAACGATAGAGCAACGGGATCCGAGCT
CAACCAGAGGTGGAATGCGACCGCGAGTACATGGAAACAGCTTTTCTCTT
CTCCAGTGCACTTTGCAGGTGGAATGTGGCGGGGAAACGTTGAAACCTCG
GAAAGAGTACAACGACCGGCTCTCGTTGAGAGCATTGTTGCTCTGCAGGC
GGATTGTGCTTCACCAGCAAATGCCGAGTACAAAGTGTGGGATGCTGACA
TGAGCGCATTGGATCTAAGCGCCGGCTTGGACTGGGTTCACATGACAGAG
TGGCGTAGGAAGAATGAGCCTGCGGATCGTAGCAGCCCATGCAGTACCCA
AAACAAAGTGGAACGCTTCACCTGCCTCGGACAAGAAACAGGAGATGCAG
GTATTCTCTTGAGTCGAACGATACATTTTCTGATGTACAAGAATGACGGC
TCCAATGCTGAACCAACCCGTTTTGCCTCTGTAGTGGAGGTGTTCGGAGC
GAAGCCATCTTCAGAGAAACCAGGATACCCGCTCGCAACAGCGCACCATG
TGCTTCCCAACAGTATATGCGGTTGGGAATCGTCCCAAGTCCCGGCTCGC
AGATGTGCTGCATCCGCCACAGAAACTGTTTTTGTTTTGAGGGTTGGCGG
AGAGGACTTTGGCCTCATTGCAGGAGAATGGTATGGTTTTGAACCTCCTC
GGAAAGGGGTTCCTGGAATTCCAGGTAGCAGGGGTGGAAGAGAATGGGGG
GTGCCTGGTATTCCAGGAACGAGGGGAGATCCGGGGCATCTGAATCTGCG
CTTATGGTTACTTGGTGCGAAAACTCGAAGGAGATGGATCAACTTGAGGC
CCGTAGGCCAGAAAAAGCAGCCTCTGTCTTATTCGCTTGAGCTTCCCTCC
CTCTCTGTAGCAGGAGGCATCGCAGCAGGTGAAGTGGGCTTCAGTCTCCA
AAATGCAACAGTGCGTGTGAGTGATAGGAGCCAGCTGCTGATAGCATATC
TGATAAGCACAGCAGCAGCAGCGCTGTTCACAACACTGCAGCCGAGGTTC
ATTCCTCGTGGCGGTGCGATTGTTGATAGCCATGAAACCATGTATCCCGC
TTGGTCAGTGCAGCAGAAAGATTATGCCACGGTTCGGGGAGCCGGTGGGG
AAGTACCCACCGAGCAGGGTAACCAAGGCTTGGGAATGATGCTTCTCGCA
TTGCAGAAAAGCGCGTGGGACTGTCTCGACTTCCCAGGGTCTCCGAAGCG
GGAGTTCAGGCTCGTCAGGGCTAAAGCGGATGCAAAAGCGAAGGAAGGCC
CAATTGAGCACAGTCCCATGTTCGGTGGTATTGTGGATGAGATCGGCAGT
CCTGAGGGGACTGATGGCTGTGGGCAGTTTGTGTGGCTGAGGTATGTGAT
TGCGCGTGCTGGAGAGAAGCTTATTGAGACCGGATACGGGCAGGTGGTGA
ACCTTGCGGAGCTGGAGTTGTCGGACGTGCTGAAGCCTGCCCAATTCCTA
GTCTCACAGTTGGCGTAG
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