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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 10224.XP_002734747.1 |
| PFAMs | GRDP-like |
| Max annot lvl | 33208|Metazoa |
| Evalue | 1e-50 |
| EggNOG OGs | 28JC1@1|root,2QRQZ@2759|Eukaryota,38E6R@33154|Opisthokonta,3BHPZ@33208|Metazoa,3D58M@33213|Bilateria |
| Description | Glycine-rich domain-containing protein-like |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2020.t1.start1 | Gcaud2020.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1148_length_13309_cov_4.323498 7769..7771 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2020.t1.intron1 | Gcaud2020.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_1148_length_13309_cov_4.323498 9891..10151 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2020.t1.stop1 | Gcaud2020.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1148_length_13309_cov_4.323498 10295..10297 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2020.t1 ID=Gcaud2020.t1|Name=Gcaud2020.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=756bp MNLLAFNLDGRKSKAKRGLASSVKALVSVLNEVDEYPALYFNHLVLREAI RRYEHLWIPLLANAKPKQRLRLVPPLDVEWVWFCHMLCPAKYATDCAAMW QAVRPNEPDFILDHVLLGPKKRLAGKLEAEQLWRQMFPHEPFDNTDAIKD APMQVPMKRGSASEASRISYNIVAAAERQMVFQYQVGIMPQYEENSFLRS AVRRYKKFLKLQQMQPDKIWVPTYDIDVCWHAHMMHPRWYHSNTVKLKGS VLKHDDTLNDRATGSELNQRWNATASTWKQLFSSPVHFAGGMWRGNVETS ERVQRPALVESIVALQADCASPANAEYKVWDADMSALDLSAGLDWVHMTE WRRKNEPADRSSPCSTQNKVERFTCLGQETGDAGILLSRTIHFLMYKNDG SNAEPTRFASVVEVFGAKPSSEKPGYPLATAHHVLPNSICGWESSQVPAR RCAASATETVFVLRVGGEDFGLIAGEWYGFEPPRKGVPGIPGSRGGREWG VPGIPGTRGDPGHLNLRLWLLGAKTRRRWINLRPVGQKKQPLSYSLELPS LSVAGGIAAGEVGFSLQNATVRVSDRSQLLIAYLISTAAAALFTTLQPRF IPRGGAIVDSHETMYPAWSVQQKDYATVRGAGGEVPTEQGNQGLGMMLLA LQKSAWDCLDFPGSPKREFRLVRAKADAKAKEGPIEHSPMFGGIVDEIGS PEGTDGCGQFVWLRYVIARAGEKLIETGYGQVVNLAELELSDVLKPAQFL VSQLA* back to topspliced messenger RNA >Gcaud2020.t1 ID=Gcaud2020.t1|Name=Gcaud2020.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2268bp|location=Sequence derived from alignment at NODE_1148_length_13309_cov_4.323498:7769..10297+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAACCTCCTGGCTTTTAACCTGGATGGACGCAAATCGAAGGCAAAGCG AGGTCTGGCGTCGTCTGTGAAGGCGTTAGTGTCTGTTCTCAATGAAGTCG ATGAGTACCCGGCTTTGTATTTCAACCACCTCGTGTTGCGGGAGGCCATC CGCCGCTATGAACATTTATGGATTCCCCTTCTTGCCAATGCCAAGCCCAA GCAACGCCTGCGTCTCGTTCCGCCGCTTGACGTTGAATGGGTTTGGTTCT GCCACATGCTCTGTCCGGCCAAATACGCCACTGACTGTGCCGCCATGTGG CAGGCCGTGCGCCCTAACGAGCCTGATTTCATTTTAGACCATGTGCTTCT GGGGCCGAAGAAGAGACTGGCCGGAAAATTGGAGGCTGAACAATTGTGGC GACAGATGTTTCCACACGAGCCTTTCGACAACACGGATGCAATCAAGGAC GCACCCATGCAAGTGCCCATGAAGCGTGGCTCCGCCTCAGAAGCGTCCCG CATCTCGTACAATATCGTGGCCGCAGCGGAAAGGCAGATGGTGTTCCAGT ATCAGGTCGGCATCATGCCGCAATATGAAGAGAACAGCTTTCTGCGGTCC GCTGTCCGCCGATACAAAAAGTTTCTCAAACTGCAACAGATGCAACCGGA TAAGATTTGGGTTCCAACATATGATATCGACGTGTGCTGGCACGCTCATA TGATGCACCCACGTTGGTATCATAGCAACACCGTGAAATTGAAGGGATCA GTACTGAAACATGATGACACGCTCAACGATAGAGCAACGGGATCCGAGCT CAACCAGAGGTGGAATGCGACCGCGAGTACATGGAAACAGCTTTTCTCTT CTCCAGTGCACTTTGCAGGTGGAATGTGGCGGGGAAACGTTGAAACCTCG GAAAGAGTACAACGACCGGCTCTCGTTGAGAGCATTGTTGCTCTGCAGGC GGATTGTGCTTCACCAGCAAATGCCGAGTACAAAGTGTGGGATGCTGACA TGAGCGCATTGGATCTAAGCGCCGGCTTGGACTGGGTTCACATGACAGAG TGGCGTAGGAAGAATGAGCCTGCGGATCGTAGCAGCCCATGCAGTACCCA AAACAAAGTGGAACGCTTCACCTGCCTCGGACAAGAAACAGGAGATGCAG GTATTCTCTTGAGTCGAACGATACATTTTCTGATGTACAAGAATGACGGC TCCAATGCTGAACCAACCCGTTTTGCCTCTGTAGTGGAGGTGTTCGGAGC GAAGCCATCTTCAGAGAAACCAGGATACCCGCTCGCAACAGCGCACCATG TGCTTCCCAACAGTATATGCGGTTGGGAATCGTCCCAAGTCCCGGCTCGC AGATGTGCTGCATCCGCCACAGAAACTGTTTTTGTTTTGAGGGTTGGCGG AGAGGACTTTGGCCTCATTGCAGGAGAATGGTATGGTTTTGAACCTCCTC GGAAAGGGGTTCCTGGAATTCCAGGTAGCAGGGGTGGAAGAGAATGGGGG GTGCCTGGTATTCCAGGAACGAGGGGAGATCCGGGGCATCTGAATCTGCG CTTATGGTTACTTGGTGCGAAAACTCGAAGGAGATGGATCAACTTGAGGC CCGTAGGCCAGAAAAAGCAGCCTCTGTCTTATTCGCTTGAGCTTCCCTCC CTCTCTGTAGCAGGAGGCATCGCAGCAGGTGAAGTGGGCTTCAGTCTCCA AAATGCAACAGTGCGTGTGAGTGATAGGAGCCAGCTGCTGATAGCATATC TGATAAGCACAGCAGCAGCAGCGCTGTTCACAACACTGCAGCCGAGGTTC ATTCCTCGTGGCGGTGCGATTGTTGATAGCCATGAAACCATGTATCCCGC TTGGTCAGTGCAGCAGAAAGATTATGCCACGGTTCGGGGAGCCGGTGGGG AAGTACCCACCGAGCAGGGTAACCAAGGCTTGGGAATGATGCTTCTCGCA TTGCAGAAAAGCGCGTGGGACTGTCTCGACTTCCCAGGGTCTCCGAAGCG GGAGTTCAGGCTCGTCAGGGCTAAAGCGGATGCAAAAGCGAAGGAAGGCC CAATTGAGCACAGTCCCATGTTCGGTGGTATTGTGGATGAGATCGGCAGT CCTGAGGGGACTGATGGCTGTGGGCAGTTTGTGTGGCTGAGGTATGTGAT TGCGCGTGCTGGAGAGAAGCTTATTGAGACCGGATACGGGCAGGTGGTGA ACCTTGCGGAGCTGGAGTTGTCGGACGTGCTGAAGCCTGCCCAATTCCTA GTCTCACAGTTGGCGTAG back to topprotein sequence of Gcaud2020.t1 >Gcaud2020.t1 ID=Gcaud2020.t1|Name=Gcaud2020.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=756bp
MNLLAFNLDGRKSKAKRGLASSVKALVSVLNEVDEYPALYFNHLVLREAI RRYEHLWIPLLANAKPKQRLRLVPPLDVEWVWFCHMLCPAKYATDCAAMW QAVRPNEPDFILDHVLLGPKKRLAGKLEAEQLWRQMFPHEPFDNTDAIKD APMQVPMKRGSASEASRISYNIVAAAERQMVFQYQVGIMPQYEENSFLRS AVRRYKKFLKLQQMQPDKIWVPTYDIDVCWHAHMMHPRWYHSNTVKLKGS VLKHDDTLNDRATGSELNQRWNATASTWKQLFSSPVHFAGGMWRGNVETS ERVQRPALVESIVALQADCASPANAEYKVWDADMSALDLSAGLDWVHMTE WRRKNEPADRSSPCSTQNKVERFTCLGQETGDAGILLSRTIHFLMYKNDG SNAEPTRFASVVEVFGAKPSSEKPGYPLATAHHVLPNSICGWESSQVPAR RCAASATETVFVLRVGGEDFGLIAGEWYGFEPPRKGVPGIPGSRGGREWG VPGIPGTRGDPGHLNLRLWLLGAKTRRRWINLRPVGQKKQPLSYSLELPS LSVAGGIAAGEVGFSLQNATVRVSDRSQLLIAYLISTAAAALFTTLQPRF IPRGGAIVDSHETMYPAWSVQQKDYATVRGAGGEVPTEQGNQGLGMMLLA LQKSAWDCLDFPGSPKREFRLVRAKADAKAKEGPIEHSPMFGGIVDEIGS PEGTDGCGQFVWLRYVIARAGEKLIETGYGQVVNLAELELSDVLKPAQFL VSQLA* back to topmRNA from alignment at NODE_1148_length_13309_cov_4.323498:7769..10297+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2020.t1 ID=Gcaud2020.t1|Name=Gcaud2020.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2529bp|location=Sequence derived from alignment at NODE_1148_length_13309_cov_4.323498:7769..10297+ (Gracilaria caudata M_176_S67 male) ATGAACCTCCTGGCTTTTAACCTGGATGGACGCAAATCGAAGGCAAAGCG
AGGTCTGGCGTCGTCTGTGAAGGCGTTAGTGTCTGTTCTCAATGAAGTCG
ATGAGTACCCGGCTTTGTATTTCAACCACCTCGTGTTGCGGGAGGCCATC
CGCCGCTATGAACATTTATGGATTCCCCTTCTTGCCAATGCCAAGCCCAA
GCAACGCCTGCGTCTCGTTCCGCCGCTTGACGTTGAATGGGTTTGGTTCT
GCCACATGCTCTGTCCGGCCAAATACGCCACTGACTGTGCCGCCATGTGG
CAGGCCGTGCGCCCTAACGAGCCTGATTTCATTTTAGACCATGTGCTTCT
GGGGCCGAAGAAGAGACTGGCCGGAAAATTGGAGGCTGAACAATTGTGGC
GACAGATGTTTCCACACGAGCCTTTCGACAACACGGATGCAATCAAGGAC
GCACCCATGCAAGTGCCCATGAAGCGTGGCTCCGCCTCAGAAGCGTCCCG
CATCTCGTACAATATCGTGGCCGCAGCGGAAAGGCAGATGGTGTTCCAGT
ATCAGGTCGGCATCATGCCGCAATATGAAGAGAACAGCTTTCTGCGGTCC
GCTGTCCGCCGATACAAAAAGTTTCTCAAACTGCAACAGATGCAACCGGA
TAAGATTTGGGTTCCAACATATGATATCGACGTGTGCTGGCACGCTCATA
TGATGCACCCACGTTGGTATCATAGCAACACCGTGAAATTGAAGGGATCA
GTACTGAAACATGATGACACGCTCAACGATAGAGCAACGGGATCCGAGCT
CAACCAGAGGTGGAATGCGACCGCGAGTACATGGAAACAGCTTTTCTCTT
CTCCAGTGCACTTTGCAGGTGGAATGTGGCGGGGAAACGTTGAAACCTCG
GAAAGAGTACAACGACCGGCTCTCGTTGAGAGCATTGTTGCTCTGCAGGC
GGATTGTGCTTCACCAGCAAATGCCGAGTACAAAGTGTGGGATGCTGACA
TGAGCGCATTGGATCTAAGCGCCGGCTTGGACTGGGTTCACATGACAGAG
TGGCGTAGGAAGAATGAGCCTGCGGATCGTAGCAGCCCATGCAGTACCCA
AAACAAAGTGGAACGCTTCACCTGCCTCGGACAAGAAACAGGAGATGCAG
GTATTCTCTTGAGTCGAACGATACATTTTCTGATGTACAAGAATGACGGC
TCCAATGCTGAACCAACCCGTTTTGCCTCTGTAGTGGAGGTGTTCGGAGC
GAAGCCATCTTCAGAGAAACCAGGATACCCGCTCGCAACAGCGCACCATG
TGCTTCCCAACAGTATATGCGGTTGGGAATCGTCCCAAGTCCCGGCTCGC
AGATGTGCTGCATCCGCCACAGAAACTGTTTTTGTTTTGAGGGTTGGCGG
AGAGGACTTTGGCCTCATTGCAGGAGAATGGTATGGTTTTGAACCTCCTC
GGAAAGGGGTTCCTGGAATTCCAGGTAGCAGGGGTGGAAGAGAATGGGGG
GTGCCTGGTATTCCAGGAACGAGGGGAGATCCGGGGCATCTGAATCTGCG
CTTATGGTTACTTGGTGCGAAAACTCGAAGGAGATGGATCAACTTGAGGC
CCGTAGGCCAGAAAAAGCAGCCTCTGTCTTATTCGCTTGAGCTTCCCTCC
CTCTCTGTAGCAGGAGGCATCGCAGCAGGTGAAGTGGGCTTCAGTCTCCA
AAATGCAACAGTGCGTGTGAGTGATAGGAGCCAGCTGCTGATAGCATATC
TGATAAGCACAGCAGCAGCAGCGCTGTTCACAACACTGCAGCCGAGGTTC
ATTCCTCGTGGCGGTGCGATTGTTGATAGCCATGAAACCATGTATCCCGC
TTGGTCAGTGCAGCAGAAAGATTATGCCACGGTTCGGGGAGCCGGTGGGG
AAGTACCCACCGAGCAGGGTAACCAAGGCTTGGGAATGATGCTTCTCGCA
TTGCAGAAAAGCGCGTGGGACTGTCTCGACTTCCCAGGGTCTCCGAAGCG
GGAGTTCAGGCTCGTCAGGGCTAAAGCGGATGCAAAAGCGAAGGAAGGCC
CAATTGAGCACAGTCCCATGTTCGGTGGTATTGTGGATGAGATCGGCAGT
CCTGAGGGGACTGATGGCTGTGGTGGTTGTGGAGGTTgcgggggttgtgg
aggctgcggtggttgtgggggatgcggcggcggcgtcggtgcagctgggg
gctgtggcggcggcggcggcggctgcggcTGTTGATCTTCGACCGATCAT
CGGTGGTGAGCCAACTCAGTCAATAACAAACACAGAATCAGCTACACGGT
GGACCGGTCCGCCGTACAGACGACGCAGTGCGATGGGGATGGTGGCAGTG
TGAGCCTGACCAGTTTGAGCGTCAATTTGGAAGGGCAGTTTGTGTGGCTG
AGGTATGTGATTGCGCGTGCTGGAGAGAAGCTTATTGAGACCGGATACGG
GCAGGTGGTGAACCTTGCGGAGCTGGAGTTGTCGGACGTGCTGAAGCCTG
CCCAATTCCTAGTCTCACAGTTGGCGTAG back to topCoding sequence (CDS) from alignment at NODE_1148_length_13309_cov_4.323498:7769..10297+ >Gcaud2020.t1 ID=Gcaud2020.t1|Name=Gcaud2020.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2268bp|location=Sequence derived from alignment at NODE_1148_length_13309_cov_4.323498:7769..10297+ (Gracilaria caudata M_176_S67 male) ATGAACCTCCTGGCTTTTAACCTGGATGGACGCAAATCGAAGGCAAAGCG AGGTCTGGCGTCGTCTGTGAAGGCGTTAGTGTCTGTTCTCAATGAAGTCG ATGAGTACCCGGCTTTGTATTTCAACCACCTCGTGTTGCGGGAGGCCATC CGCCGCTATGAACATTTATGGATTCCCCTTCTTGCCAATGCCAAGCCCAA GCAACGCCTGCGTCTCGTTCCGCCGCTTGACGTTGAATGGGTTTGGTTCT GCCACATGCTCTGTCCGGCCAAATACGCCACTGACTGTGCCGCCATGTGG CAGGCCGTGCGCCCTAACGAGCCTGATTTCATTTTAGACCATGTGCTTCT GGGGCCGAAGAAGAGACTGGCCGGAAAATTGGAGGCTGAACAATTGTGGC GACAGATGTTTCCACACGAGCCTTTCGACAACACGGATGCAATCAAGGAC GCACCCATGCAAGTGCCCATGAAGCGTGGCTCCGCCTCAGAAGCGTCCCG CATCTCGTACAATATCGTGGCCGCAGCGGAAAGGCAGATGGTGTTCCAGT ATCAGGTCGGCATCATGCCGCAATATGAAGAGAACAGCTTTCTGCGGTCC GCTGTCCGCCGATACAAAAAGTTTCTCAAACTGCAACAGATGCAACCGGA TAAGATTTGGGTTCCAACATATGATATCGACGTGTGCTGGCACGCTCATA TGATGCACCCACGTTGGTATCATAGCAACACCGTGAAATTGAAGGGATCA GTACTGAAACATGATGACACGCTCAACGATAGAGCAACGGGATCCGAGCT CAACCAGAGGTGGAATGCGACCGCGAGTACATGGAAACAGCTTTTCTCTT CTCCAGTGCACTTTGCAGGTGGAATGTGGCGGGGAAACGTTGAAACCTCG GAAAGAGTACAACGACCGGCTCTCGTTGAGAGCATTGTTGCTCTGCAGGC GGATTGTGCTTCACCAGCAAATGCCGAGTACAAAGTGTGGGATGCTGACA TGAGCGCATTGGATCTAAGCGCCGGCTTGGACTGGGTTCACATGACAGAG TGGCGTAGGAAGAATGAGCCTGCGGATCGTAGCAGCCCATGCAGTACCCA AAACAAAGTGGAACGCTTCACCTGCCTCGGACAAGAAACAGGAGATGCAG GTATTCTCTTGAGTCGAACGATACATTTTCTGATGTACAAGAATGACGGC TCCAATGCTGAACCAACCCGTTTTGCCTCTGTAGTGGAGGTGTTCGGAGC GAAGCCATCTTCAGAGAAACCAGGATACCCGCTCGCAACAGCGCACCATG TGCTTCCCAACAGTATATGCGGTTGGGAATCGTCCCAAGTCCCGGCTCGC AGATGTGCTGCATCCGCCACAGAAACTGTTTTTGTTTTGAGGGTTGGCGG AGAGGACTTTGGCCTCATTGCAGGAGAATGGTATGGTTTTGAACCTCCTC GGAAAGGGGTTCCTGGAATTCCAGGTAGCAGGGGTGGAAGAGAATGGGGG GTGCCTGGTATTCCAGGAACGAGGGGAGATCCGGGGCATCTGAATCTGCG CTTATGGTTACTTGGTGCGAAAACTCGAAGGAGATGGATCAACTTGAGGC CCGTAGGCCAGAAAAAGCAGCCTCTGTCTTATTCGCTTGAGCTTCCCTCC CTCTCTGTAGCAGGAGGCATCGCAGCAGGTGAAGTGGGCTTCAGTCTCCA AAATGCAACAGTGCGTGTGAGTGATAGGAGCCAGCTGCTGATAGCATATC TGATAAGCACAGCAGCAGCAGCGCTGTTCACAACACTGCAGCCGAGGTTC ATTCCTCGTGGCGGTGCGATTGTTGATAGCCATGAAACCATGTATCCCGC TTGGTCAGTGCAGCAGAAAGATTATGCCACGGTTCGGGGAGCCGGTGGGG AAGTACCCACCGAGCAGGGTAACCAAGGCTTGGGAATGATGCTTCTCGCA TTGCAGAAAAGCGCGTGGGACTGTCTCGACTTCCCAGGGTCTCCGAAGCG GGAGTTCAGGCTCGTCAGGGCTAAAGCGGATGCAAAAGCGAAGGAAGGCC CAATTGAGCACAGTCCCATGTTCGGTGGTATTGTGGATGAGATCGGCAGT CCTGAGGGGACTGATGGCTGTGGGCAGTTTGTGTGGCTGAGGTATGTGAT TGCGCGTGCTGGAGAGAAGCTTATTGAGACCGGATACGGGCAGGTGGTGA ACCTTGCGGAGCTGGAGTTGTCGGACGTGCTGAAGCCTGCCCAATTCCTA GTCTCACAGTTGGCGTAG back to top
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