Gcaud2016.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2016.t1
Unique Name	Gcaud2016.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	254

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_801_length_17760_cov_4.605977	contig	NODE_801_length_17760_cov_4.605977:13416..14177 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705573.1
Preferred name	RPL8
PFAMs	Ribosomal_L2,Ribosomal_L2_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02938
KEGG Pathway	ko03010,map03010
KEGG Module	M00177
GOs	GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue	4.72e-146
EggNOG OGs	COG0090@1\|root,KOG2309@2759\|Eukaryota
Description	structural constituent of ribosome
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2016	Gcaud2016	Gracilaria caudata M_176_S67 male	gene	NODE_801_length_17760_cov_4.605977 13416..14177 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2016.t1.stop1	Gcaud2016.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_801_length_17760_cov_4.605977 13416..13418 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2016.t1.CDS1	Gcaud2016.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_801_length_17760_cov_4.605977 13416..14177 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2016.t1.exon1	Gcaud2016.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_801_length_17760_cov_4.605977 13416..14177 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2016.t1.start1	Gcaud2016.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_801_length_17760_cov_4.605977 14175..14177 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2016.t1	Gcaud2016.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_801_length_17760_cov_4.605977 13416..14177 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_801_length_17760_cov_4.605977:13416..14177-
coding sequence from alignment at NODE_801_length_17760_cov_4.605977:13416..14177-

mRNA sequence

>Gcaud2016.t1 ID=Gcaud2016.t1|Name=Gcaud2016.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=254bp
MGRVIRGQRKGAGGIFKSHTSKRKGAAKLRALDYSERHGYIRGTVKDIIH
DPGRGAPLAKVVFRDRVRYRKNAELFIAAEGMYTGQFLYCGRKANLTIGN
VMPLSEMPEGTIVCNVEAKMGDRGKLARASGDYVTVIGHLDGNKTRIRLP
SGSRKIVPSTCRAMVGIVAGGGRTDKPMLKAGTAYHKYRVKRNSWPKVRG
VAMNPVEHPHGGGNHQHVGHPTTVRRDAPAGKKVGLIAARRTGRIRGGKP
SKE*

spliced messenger RNA

>Gcaud2016.t1 ID=Gcaud2016.t1|Name=Gcaud2016.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=762bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:13416..14177- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAGAGTTATCCGCGGTCAGAGAAAGGGTGCGGGCGGCATTTTCAA
GTCGCACACATCGAAGCGAAAGGGAGCCGCCAAGCTTCGCGCGCTCGACT
ATTCCGAGCGTCACGGGTACATTCGCGGCACCGTCAAGGACATTATCCAC
GACCCCGGTCGCGGCGCCCCCCTCGCAAAGGTTGTGTTCCGCGATCGCGT
GCGATACAGGAAGAATGCTGAACTGTTCATTGCGGCAGAGGGCATGTATA
CCGGCCAGTTCCTGTATTGTGGCCGCAAGGCAAACCTTACCATTGGAAAT
GTTATGCCGCTTTCTGAGATGCCTGAGGGTACCATTGTGTGCAATGTAGA
GGCCAAGATGGGAGATCGTGGAAAGTTAGCTCGCGCGAGCGGAGATTATG
TCACTGTCATCGGCCATTTGGACGGAAACAAGACCAGGATCCGTCTGCCG
TCCGGATCGAGAAAGATTGTTCCCAGCACTTGCAGGGCAATGGTTGGCAT
TGTGGCGGGTGGCGGAAGAACCGATAAGCCAATGCTCAAGGCTGGTACCG
CGTACCACAAATACCGCGTCAAGAGAAACTCATGGCCGAAGGTCAGAGGT
GTGGCAATGAATCCTGTGGAACATCCTCACGGTGGTGGTAACCATCAGCA
CGTTGGGCATCCTACAACGGTGCGTCGTGACGCACCTGCTGGTAAGAAGG
TCGGTCTCATTGCAGCGCGTCGTACAGGTCGTATTCGTGGTGGTAAGCCA
TCCAAGGAATAG

protein sequence of Gcaud2016.t1

>Gcaud2016.t1 ID=Gcaud2016.t1|Name=Gcaud2016.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=254bp
MGRVIRGQRKGAGGIFKSHTSKRKGAAKLRALDYSERHGYIRGTVKDIIH
DPGRGAPLAKVVFRDRVRYRKNAELFIAAEGMYTGQFLYCGRKANLTIGN
VMPLSEMPEGTIVCNVEAKMGDRGKLARASGDYVTVIGHLDGNKTRIRLP
SGSRKIVPSTCRAMVGIVAGGGRTDKPMLKAGTAYHKYRVKRNSWPKVRG
VAMNPVEHPHGGGNHQHVGHPTTVRRDAPAGKKVGLIAARRTGRIRGGKP
SKE*

mRNA from alignment at NODE_801_length_17760_cov_4.605977:13416..14177-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2016.t1 ID=Gcaud2016.t1|Name=Gcaud2016.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=762bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:13416..14177- (Gracilaria caudata M_176_S67 male)
ATGGGAAGAGTTATCCGCGGTCAGAGAAAGGGTGCGGGCGGCATTTTCAA
GTCGCACACATCGAAGCGAAAGGGAGCCGCCAAGCTTCGCGCGCTCGACT
ATTCCGAGCGTCACGGGTACATTCGCGGCACCGTCAAGGACATTATCCAC
GACCCCGGTCGCGGCGCCCCCCTCGCAAAGGTTGTGTTCCGCGATCGCGT
GCGATACAGGAAGAATGCTGAACTGTTCATTGCGGCAGAGGGCATGTATA
CCGGCCAGTTCCTGTATTGTGGCCGCAAGGCAAACCTTACCATTGGAAAT
GTTATGCCGCTTTCTGAGATGCCTGAGGGTACCATTGTGTGCAATGTAGA
GGCCAAGATGGGAGATCGTGGAAAGTTAGCTCGCGCGAGCGGAGATTATG
TCACTGTCATCGGCCATTTGGACGGAAACAAGACCAGGATCCGTCTGCCG
TCCGGATCGAGAAAGATTGTTCCCAGCACTTGCAGGGCAATGGTTGGCAT
TGTGGCGGGTGGCGGAAGAACCGATAAGCCAATGCTCAAGGCTGGTACCG
CGTACCACAAATACCGCGTCAAGAGAAACTCATGGCCGAAGGTCAGAGGT
GTGGCAATGAATCCTGTGGAACATCCTCACGGTGGTGGTAACCATCAGCA
CGTTGGGCATCCTACAACGGTGCGTCGTGACGCACCTGCTGGTAAGAAGG
TCGGTCTCATTGCAGCGCGTCGTACAGGTCGTATTCGTGGTGGTAAGCCA
TCCAAGGAATAG

Coding sequence (CDS) from alignment at NODE_801_length_17760_cov_4.605977:13416..14177-

>Gcaud2016.t1 ID=Gcaud2016.t1|Name=Gcaud2016.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=762bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:13416..14177- (Gracilaria caudata M_176_S67 male)
ATGGGAAGAGTTATCCGCGGTCAGAGAAAGGGTGCGGGCGGCATTTTCAA
GTCGCACACATCGAAGCGAAAGGGAGCCGCCAAGCTTCGCGCGCTCGACT
ATTCCGAGCGTCACGGGTACATTCGCGGCACCGTCAAGGACATTATCCAC
GACCCCGGTCGCGGCGCCCCCCTCGCAAAGGTTGTGTTCCGCGATCGCGT
GCGATACAGGAAGAATGCTGAACTGTTCATTGCGGCAGAGGGCATGTATA
CCGGCCAGTTCCTGTATTGTGGCCGCAAGGCAAACCTTACCATTGGAAAT
GTTATGCCGCTTTCTGAGATGCCTGAGGGTACCATTGTGTGCAATGTAGA
GGCCAAGATGGGAGATCGTGGAAAGTTAGCTCGCGCGAGCGGAGATTATG
TCACTGTCATCGGCCATTTGGACGGAAACAAGACCAGGATCCGTCTGCCG
TCCGGATCGAGAAAGATTGTTCCCAGCACTTGCAGGGCAATGGTTGGCAT
TGTGGCGGGTGGCGGAAGAACCGATAAGCCAATGCTCAAGGCTGGTACCG
CGTACCACAAATACCGCGTCAAGAGAAACTCATGGCCGAAGGTCAGAGGT
GTGGCAATGAATCCTGTGGAACATCCTCACGGTGGTGGTAACCATCAGCA
CGTTGGGCATCCTACAACGGTGCGTCGTGACGCACCTGCTGGTAAGAAGG
TCGGTCTCATTGCAGCGCGTCGTACAGGTCGTATTCGTGGTGGTAAGCCA
TCCAAGGAATAG