Gcaud2013.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2013.t1
Unique Name	Gcaud2013.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	287

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_801_length_17760_cov_4.605977	contig	NODE_801_length_17760_cov_4.605977:3906..4766 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2013	Gcaud2013	Gracilaria caudata M_176_S67 male	gene	NODE_801_length_17760_cov_4.605977 3906..4766 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2013.t1.start1	Gcaud2013.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_801_length_17760_cov_4.605977 3906..3908 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2013.t1.CDS1	Gcaud2013.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_801_length_17760_cov_4.605977 3906..4766 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2013.t1.exon1	Gcaud2013.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_801_length_17760_cov_4.605977 3906..4766 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2013.t1.stop1	Gcaud2013.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_801_length_17760_cov_4.605977 4764..4766 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2013.t1	Gcaud2013.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_801_length_17760_cov_4.605977 3906..4766 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_801_length_17760_cov_4.605977:3906..4766+
coding sequence from alignment at NODE_801_length_17760_cov_4.605977:3906..4766+

mRNA sequence

>Gcaud2013.t1 ID=Gcaud2013.t1|Name=Gcaud2013.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=287bp
MSIDSKTLAVADSLNTISIFTVGTSDEKLTLDCIRPASSTITALAITEGG
STVLFVEKCAPAILKMFNTSDPTALHEISPVHERDEARVVSCSISSHFIL
ASFYNKRTSTRAMALWRRAHNKIDSELTQVFAWNSEQVGSSQTHLYSPLY
VTEWHTQGDHCAYNAEVAYHVDKKLVYHPEVGNEECVRPSCILLDRKPIA
IRIDQSHGRDCVYILSENQLRIYRVNRRSQLCLVDCVDFGNEICSSAVCG
IWKGRRNRHVTVARIVNGQVMVFRAQLPNGVRFQIP*

spliced messenger RNA

>Gcaud2013.t1 ID=Gcaud2013.t1|Name=Gcaud2013.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:3906..4766+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATTGACTCCAAAACACTCGCCGTAGCAGACTCCCTTAACACGAT
ATCCATCTTTACCGTTGGTACTTCAGACGAGAAACTTACTCTAGATTGCA
TTCGCCCTGCAAGCAGCACGATAACTGCCCTAGCGATCACGGAGGGAGGC
AGTACGGTGCTCTTCGTGGAAAAGTGTGCGCCGGCAATTTTGAAGATGTT
CAATACTTCCGACCCAACTGCCTTGCATGAAATCAGCCCCGTGCACGAGC
GCGACGAAGCCCGGGTGGTAAGCTGTTCTATCAGTTCTCACTTCATACTT
GCCAGCTTCTACAACAAAAGGACATCAACAAGAGCAATGGCCTTGTGGCG
TCGGGCGCATAACAAGATTGACTCCGAACTCACTCAAGTTTTCGCCTGGA
ATTCGGAGCAAGTTGGAAGTAGTCAAACGCATTTGTATAGCCCATTGTAC
GTCACAGAGTGGCATACACAAGGTGACCACTGTGCATACAATGCCGAGGT
CGCGTACCACGTTGATAAAAAACTCGTGTATCATCCAGAAGTCGGAAATG
AAGAATGTGTGCGGCCGAGCTGCATATTACTGGATCGAAAGCCCATTGCC
ATTCGTATAGATCAGAGCCACGGAAGGGACTGTGTGTACATTCTGTCCGA
AAACCAACTCCGCATATATCGAGTGAATCGGAGGAGCCAACTCTGTCTGG
TTGACTGCGTGGATTTTGGCAATGAGATCTGCAGCTCAGCTGTTTGCGGG
ATTTGGAAGGGGCGTCGGAATCGTCATGTCACAGTTGCCCGCATTGTAAA
TGGGCAAGTCATGGTTTTCCGAGCTCAGCTTCCAAATGGTGTCAGATTCC
AAATCCCTTAA

protein sequence of Gcaud2013.t1

>Gcaud2013.t1 ID=Gcaud2013.t1|Name=Gcaud2013.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=287bp
MSIDSKTLAVADSLNTISIFTVGTSDEKLTLDCIRPASSTITALAITEGG
STVLFVEKCAPAILKMFNTSDPTALHEISPVHERDEARVVSCSISSHFIL
ASFYNKRTSTRAMALWRRAHNKIDSELTQVFAWNSEQVGSSQTHLYSPLY
VTEWHTQGDHCAYNAEVAYHVDKKLVYHPEVGNEECVRPSCILLDRKPIA
IRIDQSHGRDCVYILSENQLRIYRVNRRSQLCLVDCVDFGNEICSSAVCG
IWKGRRNRHVTVARIVNGQVMVFRAQLPNGVRFQIP*

mRNA from alignment at NODE_801_length_17760_cov_4.605977:3906..4766+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2013.t1 ID=Gcaud2013.t1|Name=Gcaud2013.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:3906..4766+ (Gracilaria caudata M_176_S67 male)
ATGTCCATTGACTCCAAAACACTCGCCGTAGCAGACTCCCTTAACACGAT
ATCCATCTTTACCGTTGGTACTTCAGACGAGAAACTTACTCTAGATTGCA
TTCGCCCTGCAAGCAGCACGATAACTGCCCTAGCGATCACGGAGGGAGGC
AGTACGGTGCTCTTCGTGGAAAAGTGTGCGCCGGCAATTTTGAAGATGTT
CAATACTTCCGACCCAACTGCCTTGCATGAAATCAGCCCCGTGCACGAGC
GCGACGAAGCCCGGGTGGTAAGCTGTTCTATCAGTTCTCACTTCATACTT
GCCAGCTTCTACAACAAAAGGACATCAACAAGAGCAATGGCCTTGTGGCG
TCGGGCGCATAACAAGATTGACTCCGAACTCACTCAAGTTTTCGCCTGGA
ATTCGGAGCAAGTTGGAAGTAGTCAAACGCATTTGTATAGCCCATTGTAC
GTCACAGAGTGGCATACACAAGGTGACCACTGTGCATACAATGCCGAGGT
CGCGTACCACGTTGATAAAAAACTCGTGTATCATCCAGAAGTCGGAAATG
AAGAATGTGTGCGGCCGAGCTGCATATTACTGGATCGAAAGCCCATTGCC
ATTCGTATAGATCAGAGCCACGGAAGGGACTGTGTGTACATTCTGTCCGA
AAACCAACTCCGCATATATCGAGTGAATCGGAGGAGCCAACTCTGTCTGG
TTGACTGCGTGGATTTTGGCAATGAGATCTGCAGCTCAGCTGTTTGCGGG
ATTTGGAAGGGGCGTCGGAATCGTCATGTCACAGTTGCCCGCATTGTAAA
TGGGCAAGTCATGGTTTTCCGAGCTCAGCTTCCAAATGGTGTCAGATTCC
AAATCCCTTAA

Coding sequence (CDS) from alignment at NODE_801_length_17760_cov_4.605977:3906..4766+

>Gcaud2013.t1 ID=Gcaud2013.t1|Name=Gcaud2013.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=861bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:3906..4766+ (Gracilaria caudata M_176_S67 male)
ATGTCCATTGACTCCAAAACACTCGCCGTAGCAGACTCCCTTAACACGAT
ATCCATCTTTACCGTTGGTACTTCAGACGAGAAACTTACTCTAGATTGCA
TTCGCCCTGCAAGCAGCACGATAACTGCCCTAGCGATCACGGAGGGAGGC
AGTACGGTGCTCTTCGTGGAAAAGTGTGCGCCGGCAATTTTGAAGATGTT
CAATACTTCCGACCCAACTGCCTTGCATGAAATCAGCCCCGTGCACGAGC
GCGACGAAGCCCGGGTGGTAAGCTGTTCTATCAGTTCTCACTTCATACTT
GCCAGCTTCTACAACAAAAGGACATCAACAAGAGCAATGGCCTTGTGGCG
TCGGGCGCATAACAAGATTGACTCCGAACTCACTCAAGTTTTCGCCTGGA
ATTCGGAGCAAGTTGGAAGTAGTCAAACGCATTTGTATAGCCCATTGTAC
GTCACAGAGTGGCATACACAAGGTGACCACTGTGCATACAATGCCGAGGT
CGCGTACCACGTTGATAAAAAACTCGTGTATCATCCAGAAGTCGGAAATG
AAGAATGTGTGCGGCCGAGCTGCATATTACTGGATCGAAAGCCCATTGCC
ATTCGTATAGATCAGAGCCACGGAAGGGACTGTGTGTACATTCTGTCCGA
AAACCAACTCCGCATATATCGAGTGAATCGGAGGAGCCAACTCTGTCTGG
TTGACTGCGTGGATTTTGGCAATGAGATCTGCAGCTCAGCTGTTTGCGGG
ATTTGGAAGGGGCGTCGGAATCGTCATGTCACAGTTGCCCGCATTGTAAA
TGGGCAAGTCATGGTTTTCCGAGCTCAGCTTCCAAATGGTGTCAGATTCC
AAATCCCTTAA