Gcaud2008.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2008.t1
Unique Name	Gcaud2008.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	266

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:85496..86293 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3656.XP_008437260.1
PFAMs	ARID,JmjC,JmjN,PHD,PLU-1,zf-C5HC2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K11446
GOs	GO:0000122,GO:0000976,GO:0001046,GO:0001047,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0003712,GO:0003713,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006482,GO:0006807,GO:0006996,GO:0007623,GO:0008150,GO:0008152,GO:0008214,GO:0008270,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0016043,GO:0016569,GO:0016570,GO:0016577,GO:0019219,GO:0019222,GO:0019538,GO:0031056,GO:0031057,GO:0031063,GO:0031064,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031490,GO:0032268,GO:0032269,GO:0032451,GO:0032452,GO:0032453,GO:0032501,GO:0032922,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0034647,GO:0034648,GO:0034720,GO:0034721,GO:0035064,GO:0036211,GO:0042393,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043565,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046872,GO:0046914,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051090,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051336,GO:0051346,GO:0060255,GO:0065007,GO:0065009,GO:0070076,GO:0070988,GO:0071704,GO:0071840,GO:0080090,GO:0090311,GO:0097159,GO:0140030,GO:0140034,GO:0140096,GO:0140110,GO:1901363,GO:1901564,GO:1901725,GO:1901726,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1990837,GO:2000112,GO:2000113,GO:2001141,GO:2001251
Evalue	6.78e-10
EggNOG OGs	COG0055@1\|root,KOG1246@2759\|Eukaryota,37KV3@33090\|Viridiplantae,3G92M@35493\|Streptophyta,4JEDA@91835\|fabids
Description	lysine-specific demethylase
COG category	K
BRITE	ko00000,ko01000,ko01009,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2008	Gcaud2008	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 85496..86293 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2008.t1.stop1	Gcaud2008.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 85496..85498 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2008.t1.CDS1	Gcaud2008.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 85496..86293 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2008.t1.exon1	Gcaud2008.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 85496..86293 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2008.t1.start1	Gcaud2008.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 86291..86293 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2008.t1	Gcaud2008.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 85496..86293 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:85496..86293-
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:85496..86293-

mRNA sequence

>Gcaud2008.t1 ID=Gcaud2008.t1|Name=Gcaud2008.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=266bp
MAAPLAAPHLVMYDDFLIEAYRTITFVPFATVSEQRGSIQKTAEHERQDE
LYGRCRICCSSNRPGEHMLLCDSCDRAFHIGCLHPRLKDIPKGEWHCANC
TSETLYNQHSRAATVANFRNVMLDIHNFPSLPLKLRFKMLDLFATKRAPP
ADHTPNGQLSVPHPPPRRPLRSLPPKERCKRMRTSSQPDLQNGSTSATDT
GVPLVSNGLRVAPARNVVRLARDLQPVAHMLRNEQALHVLSVLETHFSSQ
QMRARAVGAMNKQPS*

spliced messenger RNA

>Gcaud2008.t1 ID=Gcaud2008.t1|Name=Gcaud2008.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=798bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:85496..86293- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCCCGCTCGCCGCCCCCCACCTCGTCATGTACGACGACTTCCT
AATCGAGGCGTACCGCACCATCACCTTCGTCCCGTTCGCCACCGTGAGCG
AGCAGCGTGGATCCATACAGAAGACAGCCGAGCACGAGCGTCAAGACGAG
CTCTACGGTCGCTGTCGCATTTGCTGCTCCTCCAACAGGCCGGGTGAACA
TATGCTTCTCTGCGACAGCTGTGACCGAGCCTTTCACATCGGCTGTCTGC
ATCCGCGCCTCAAGGACATTCCCAAAGGCGAGTGGCACTGCGCCAACTGC
ACCAGCGAGACGCTGTACAACCAGCACTCTCGCGCCGCCACCGTGGCCAA
CTTCCGAAACGTCATGCTTGACATTCACAACTTTCCGTCGCTCCCTCTCA
AACTTCGTTTCAAGATGCTCGATCTGTTCGCTACAAAGCGCGCTCCACCA
GCTGATCACACCCCAAATGGTCAGCTTTCCGTGCCGCACCCACCGCCACG
CCGCCCATTGAGATCGCTCCCTCCGAAGGAGCGCTGCAAGCGTATGCGTA
CCTCTTCACAACCGGATTTGCAAAACGGCTCGACTAGCGCGACCGATACG
GGCGTTCCACTGGTGAGCAATGGCCTGCGTGTCGCTCCTGCCCGCAACGT
CGTACGTCTGGCTCGTGATCTTCAGCCGGTGGCACATATGCTACGTAACG
AGCAAGCCCTCCACGTTCTTTCAGTTTTGGAAACTCATTTCAGCTCCCAA
CAGATGAGAGCGAGAGCAGTGGGTGCCATGAACAAACAGCCCTCGTAA

protein sequence of Gcaud2008.t1

>Gcaud2008.t1 ID=Gcaud2008.t1|Name=Gcaud2008.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=266bp
MAAPLAAPHLVMYDDFLIEAYRTITFVPFATVSEQRGSIQKTAEHERQDE
LYGRCRICCSSNRPGEHMLLCDSCDRAFHIGCLHPRLKDIPKGEWHCANC
TSETLYNQHSRAATVANFRNVMLDIHNFPSLPLKLRFKMLDLFATKRAPP
ADHTPNGQLSVPHPPPRRPLRSLPPKERCKRMRTSSQPDLQNGSTSATDT
GVPLVSNGLRVAPARNVVRLARDLQPVAHMLRNEQALHVLSVLETHFSSQ
QMRARAVGAMNKQPS*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:85496..86293-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2008.t1 ID=Gcaud2008.t1|Name=Gcaud2008.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=798bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:85496..86293- (Gracilaria caudata M_176_S67 male)
ATGGCCGCCCCGCTCGCCGCCCCCCACCTCGTCATGTACGACGACTTCCT
AATCGAGGCGTACCGCACCATCACCTTCGTCCCGTTCGCCACCGTGAGCG
AGCAGCGTGGATCCATACAGAAGACAGCCGAGCACGAGCGTCAAGACGAG
CTCTACGGTCGCTGTCGCATTTGCTGCTCCTCCAACAGGCCGGGTGAACA
TATGCTTCTCTGCGACAGCTGTGACCGAGCCTTTCACATCGGCTGTCTGC
ATCCGCGCCTCAAGGACATTCCCAAAGGCGAGTGGCACTGCGCCAACTGC
ACCAGCGAGACGCTGTACAACCAGCACTCTCGCGCCGCCACCGTGGCCAA
CTTCCGAAACGTCATGCTTGACATTCACAACTTTCCGTCGCTCCCTCTCA
AACTTCGTTTCAAGATGCTCGATCTGTTCGCTACAAAGCGCGCTCCACCA
GCTGATCACACCCCAAATGGTCAGCTTTCCGTGCCGCACCCACCGCCACG
CCGCCCATTGAGATCGCTCCCTCCGAAGGAGCGCTGCAAGCGTATGCGTA
CCTCTTCACAACCGGATTTGCAAAACGGCTCGACTAGCGCGACCGATACG
GGCGTTCCACTGGTGAGCAATGGCCTGCGTGTCGCTCCTGCCCGCAACGT
CGTACGTCTGGCTCGTGATCTTCAGCCGGTGGCACATATGCTACGTAACG
AGCAAGCCCTCCACGTTCTTTCAGTTTTGGAAACTCATTTCAGCTCCCAA
CAGATGAGAGCGAGAGCAGTGGGTGCCATGAACAAACAGCCCTCGTAA

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:85496..86293-

>Gcaud2008.t1 ID=Gcaud2008.t1|Name=Gcaud2008.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=798bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:85496..86293- (Gracilaria caudata M_176_S67 male)
ATGGCCGCCCCGCTCGCCGCCCCCCACCTCGTCATGTACGACGACTTCCT
AATCGAGGCGTACCGCACCATCACCTTCGTCCCGTTCGCCACCGTGAGCG
AGCAGCGTGGATCCATACAGAAGACAGCCGAGCACGAGCGTCAAGACGAG
CTCTACGGTCGCTGTCGCATTTGCTGCTCCTCCAACAGGCCGGGTGAACA
TATGCTTCTCTGCGACAGCTGTGACCGAGCCTTTCACATCGGCTGTCTGC
ATCCGCGCCTCAAGGACATTCCCAAAGGCGAGTGGCACTGCGCCAACTGC
ACCAGCGAGACGCTGTACAACCAGCACTCTCGCGCCGCCACCGTGGCCAA
CTTCCGAAACGTCATGCTTGACATTCACAACTTTCCGTCGCTCCCTCTCA
AACTTCGTTTCAAGATGCTCGATCTGTTCGCTACAAAGCGCGCTCCACCA
GCTGATCACACCCCAAATGGTCAGCTTTCCGTGCCGCACCCACCGCCACG
CCGCCCATTGAGATCGCTCCCTCCGAAGGAGCGCTGCAAGCGTATGCGTA
CCTCTTCACAACCGGATTTGCAAAACGGCTCGACTAGCGCGACCGATACG
GGCGTTCCACTGGTGAGCAATGGCCTGCGTGTCGCTCCTGCCCGCAACGT
CGTACGTCTGGCTCGTGATCTTCAGCCGGTGGCACATATGCTACGTAACG
AGCAAGCCCTCCACGTTCTTTCAGTTTTGGAAACTCATTTCAGCTCCCAA
CAGATGAGAGCGAGAGCAGTGGGTGCCATGAACAAACAGCCCTCGTAA