Gcaud2007.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2007.t1
Unique Name	Gcaud2007.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	380

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:83655..84794 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS263CT
PFAMs	PfkB
Max annot lvl	2759\|Eukaryota
Evalue	1.42e-86
EggNOG OGs	KOG2947@1\|root,KOG2947@2759\|Eukaryota
Description	Belongs to the carbohydrate kinase PfkB family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2007	Gcaud2007	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 83655..84794 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2007.t1.start1	Gcaud2007.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 83655..83657 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2007.t1.CDS1	Gcaud2007.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 83655..84794 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2007.t1.exon1	Gcaud2007.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 83655..84794 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2007.t1.stop1	Gcaud2007.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 84792..84794 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2007.t1	Gcaud2007.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 83655..84794 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:83655..84794+
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:83655..84794+

mRNA sequence

>Gcaud2007.t1 ID=Gcaud2007.t1|Name=Gcaud2007.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=380bp
MPTILPAFVPTLPLRVERQPSRRARPQLRMGTADGDALPVEVPRFLRNTR
VLGLGLSAVDLLASVKHFPKPDDKIRTEQLCVFGGGNTANSLTGVRRLGV
ECVLVSKVGDDMYGRVAVEELRRDGIDTRYVQIKSGVNTTFTYVIVDSTQ
HTRTCISTPAREDLFESDVHESMLDGVHLVLLDGRHTLAAIRLAQLAKER
HIPILLDIERNRPHIERLLPYADYIVTNSTYPFVFSPAANSPAQALQNML
DQCQARFVISTRGSSGSMLIRPRSARKMSSGVDLLVQRRNFAHESGRGYE
LLECPAWPVDKIVDTTGAGDAFIAGVAYGIVTNMDLERMLSLASFIAAKK
LAALGSRTALARREQIPDTLLATLPSLLD*

spliced messenger RNA

>Gcaud2007.t1 ID=Gcaud2007.t1|Name=Gcaud2007.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:83655..84794+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACGATTTTGCCGGCCTTTGTGCCGACGCTTCCGCTACGCGTCGA
GCGGCAACCGTCGCGGCGTGCGCGTCCACAGTTGCGAATGGGCACGGCGG
ACGGCGATGCGTTGCCGGTAGAGGTGCCGCGCTTTCTGCGCAACACGCGT
GTGTTGGGCTTGGGACTGTCGGCTGTGGACCTACTCGCGAGCGTAAAGCA
CTTCCCCAAGCCCGATGACAAGATTCGCACGGAGCAGCTTTGCGTGTTTG
GCGGCGGCAACACTGCCAATTCGCTCACGGGCGTCAGACGACTTGGCGTT
GAATGCGTGTTGGTTTCGAAGGTGGGCGATGATATGTATGGCCGAGTTGC
TGTAGAGGAACTGAGACGCGATGGCATTGATACAAGATATGTGCAGATCA
AGTCGGGTGTCAACACAACTTTCACTTATGTTATTGTCGATAGTACGCAG
CACACGCGCACGTGCATTTCCACTCCGGCGAGGGAGGATTTGTTTGAGAG
CGATGTTCACGAGTCCATGTTGGACGGTGTGCACCTGGTTCTGCTGGATG
GCCGACACACATTAGCCGCAATTCGCCTCGCGCAACTGGCAAAGGAACGT
CACATACCCATTCTCCTCGATATTGAACGCAATCGCCCGCACATTGAACG
CTTACTTCCATATGCTGACTATATCGTTACCAACAGTACATATCCGTTTG
TGTTCAGCCCCGCTGCAAATTCGCCAGCACAAGCGCTGCAAAACATGTTA
GACCAATGCCAAGCGCGTTTTGTAATATCCACTCGCGGCTCGTCGGGCAG
CATGCTCATACGTCCCCGTTCAGCTCGCAAAATGAGCTCGGGCGTCGATT
TATTGGTGCAGAGAAGAAATTTTGCGCATGAGTCTGGAAGAGGGTACGAG
CTGTTGGAATGTCCCGCGTGGCCTGTTGACAAGATTGTGGATACAACCGG
TGCAGGCGACGCTTTCATTGCAGGTGTGGCGTATGGAATTGTAACCAATA
TGGATCTAGAGCGAATGTTATCGCTTGCGTCCTTCATTGCCGCCAAAAAA
CTTGCCGCTCTGGGGTCGAGGACAGCATTAGCTAGACGCGAACAAATCCC
TGACACGCTTCTGGCCACATTGCCTTCGTTATTAGATTAG

protein sequence of Gcaud2007.t1

>Gcaud2007.t1 ID=Gcaud2007.t1|Name=Gcaud2007.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=380bp
MPTILPAFVPTLPLRVERQPSRRARPQLRMGTADGDALPVEVPRFLRNTR
VLGLGLSAVDLLASVKHFPKPDDKIRTEQLCVFGGGNTANSLTGVRRLGV
ECVLVSKVGDDMYGRVAVEELRRDGIDTRYVQIKSGVNTTFTYVIVDSTQ
HTRTCISTPAREDLFESDVHESMLDGVHLVLLDGRHTLAAIRLAQLAKER
HIPILLDIERNRPHIERLLPYADYIVTNSTYPFVFSPAANSPAQALQNML
DQCQARFVISTRGSSGSMLIRPRSARKMSSGVDLLVQRRNFAHESGRGYE
LLECPAWPVDKIVDTTGAGDAFIAGVAYGIVTNMDLERMLSLASFIAAKK
LAALGSRTALARREQIPDTLLATLPSLLD*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:83655..84794+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2007.t1 ID=Gcaud2007.t1|Name=Gcaud2007.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:83655..84794+ (Gracilaria caudata M_176_S67 male)
ATGCCCACGATTTTGCCGGCCTTTGTGCCGACGCTTCCGCTACGCGTCGA
GCGGCAACCGTCGCGGCGTGCGCGTCCACAGTTGCGAATGGGCACGGCGG
ACGGCGATGCGTTGCCGGTAGAGGTGCCGCGCTTTCTGCGCAACACGCGT
GTGTTGGGCTTGGGACTGTCGGCTGTGGACCTACTCGCGAGCGTAAAGCA
CTTCCCCAAGCCCGATGACAAGATTCGCACGGAGCAGCTTTGCGTGTTTG
GCGGCGGCAACACTGCCAATTCGCTCACGGGCGTCAGACGACTTGGCGTT
GAATGCGTGTTGGTTTCGAAGGTGGGCGATGATATGTATGGCCGAGTTGC
TGTAGAGGAACTGAGACGCGATGGCATTGATACAAGATATGTGCAGATCA
AGTCGGGTGTCAACACAACTTTCACTTATGTTATTGTCGATAGTACGCAG
CACACGCGCACGTGCATTTCCACTCCGGCGAGGGAGGATTTGTTTGAGAG
CGATGTTCACGAGTCCATGTTGGACGGTGTGCACCTGGTTCTGCTGGATG
GCCGACACACATTAGCCGCAATTCGCCTCGCGCAACTGGCAAAGGAACGT
CACATACCCATTCTCCTCGATATTGAACGCAATCGCCCGCACATTGAACG
CTTACTTCCATATGCTGACTATATCGTTACCAACAGTACATATCCGTTTG
TGTTCAGCCCCGCTGCAAATTCGCCAGCACAAGCGCTGCAAAACATGTTA
GACCAATGCCAAGCGCGTTTTGTAATATCCACTCGCGGCTCGTCGGGCAG
CATGCTCATACGTCCCCGTTCAGCTCGCAAAATGAGCTCGGGCGTCGATT
TATTGGTGCAGAGAAGAAATTTTGCGCATGAGTCTGGAAGAGGGTACGAG
CTGTTGGAATGTCCCGCGTGGCCTGTTGACAAGATTGTGGATACAACCGG
TGCAGGCGACGCTTTCATTGCAGGTGTGGCGTATGGAATTGTAACCAATA
TGGATCTAGAGCGAATGTTATCGCTTGCGTCCTTCATTGCCGCCAAAAAA
CTTGCCGCTCTGGGGTCGAGGACAGCATTAGCTAGACGCGAACAAATCCC
TGACACGCTTCTGGCCACATTGCCTTCGTTATTAGATTAG

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:83655..84794+

>Gcaud2007.t1 ID=Gcaud2007.t1|Name=Gcaud2007.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1140bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:83655..84794+ (Gracilaria caudata M_176_S67 male)
ATGCCCACGATTTTGCCGGCCTTTGTGCCGACGCTTCCGCTACGCGTCGA
GCGGCAACCGTCGCGGCGTGCGCGTCCACAGTTGCGAATGGGCACGGCGG
ACGGCGATGCGTTGCCGGTAGAGGTGCCGCGCTTTCTGCGCAACACGCGT
GTGTTGGGCTTGGGACTGTCGGCTGTGGACCTACTCGCGAGCGTAAAGCA
CTTCCCCAAGCCCGATGACAAGATTCGCACGGAGCAGCTTTGCGTGTTTG
GCGGCGGCAACACTGCCAATTCGCTCACGGGCGTCAGACGACTTGGCGTT
GAATGCGTGTTGGTTTCGAAGGTGGGCGATGATATGTATGGCCGAGTTGC
TGTAGAGGAACTGAGACGCGATGGCATTGATACAAGATATGTGCAGATCA
AGTCGGGTGTCAACACAACTTTCACTTATGTTATTGTCGATAGTACGCAG
CACACGCGCACGTGCATTTCCACTCCGGCGAGGGAGGATTTGTTTGAGAG
CGATGTTCACGAGTCCATGTTGGACGGTGTGCACCTGGTTCTGCTGGATG
GCCGACACACATTAGCCGCAATTCGCCTCGCGCAACTGGCAAAGGAACGT
CACATACCCATTCTCCTCGATATTGAACGCAATCGCCCGCACATTGAACG
CTTACTTCCATATGCTGACTATATCGTTACCAACAGTACATATCCGTTTG
TGTTCAGCCCCGCTGCAAATTCGCCAGCACAAGCGCTGCAAAACATGTTA
GACCAATGCCAAGCGCGTTTTGTAATATCCACTCGCGGCTCGTCGGGCAG
CATGCTCATACGTCCCCGTTCAGCTCGCAAAATGAGCTCGGGCGTCGATT
TATTGGTGCAGAGAAGAAATTTTGCGCATGAGTCTGGAAGAGGGTACGAG
CTGTTGGAATGTCCCGCGTGGCCTGTTGACAAGATTGTGGATACAACCGG
TGCAGGCGACGCTTTCATTGCAGGTGTGGCGTATGGAATTGTAACCAATA
TGGATCTAGAGCGAATGTTATCGCTTGCGTCCTTCATTGCCGCCAAAAAA
CTTGCCGCTCTGGGGTCGAGGACAGCATTAGCTAGACGCGAACAAATCCC
TGACACGCTTCTGGCCACATTGCCTTCGTTATTAGATTAG