Gcaud2006.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2006.t1
Unique NameGcaud2006.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:80406..81353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD16354
PFAMsMTS,Methyltransf_11,Methyltransf_25
Max annot lvl2759|Eukaryota
KEGG koko:K06983
Evalue7.78e-67
EggNOG OGsCOG2521@1|root,2S1AS@2759|Eukaryota
DescriptionPfam:Methyltransf_26
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2006Gcaud2006Gracilaria caudata M_176_S67 malegeneNODE_5_length_105932_cov_4.447794 80406..81353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2006.t1Gcaud2006.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5_length_105932_cov_4.447794 80406..81353 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2006.t1.stop1Gcaud2006.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5_length_105932_cov_4.447794 80406..80408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2006.t1.CDS1Gcaud2006.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 80406..80443 -
Gcaud2006.t1.CDS2Gcaud2006.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 80744..81353 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2006.t1.exon1Gcaud2006.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 80406..80443 -
Gcaud2006.t1.exon2Gcaud2006.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 80744..81353 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2006.t1.intron1Gcaud2006.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_5_length_105932_cov_4.447794 80444..80743 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2006.t1.start1Gcaud2006.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5_length_105932_cov_4.447794 81351..81353 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2006.t1 ID=Gcaud2006.t1|Name=Gcaud2006.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=216bp
MSELTNRVASLMPVAPAAPPTLLLAGFTMHRVKSVDPGADTARKMTAIGC
VRGRVLDVCTGLGYTAMAAARCADVTQVTTIELDPVVLAIARRNPWSRAL
FSEPLIDSICADATCVLPTLHDKSFDVIIHDPPARVLGGDLYSLSFYEQL
RRVCTRSGTLFHYVGDPNSRESGRLYRGIVDRLQKAGFSNIQRRPDAYGL
VASSPLKQPHSWHNA*
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spliced messenger RNA

>Gcaud2006.t1 ID=Gcaud2006.t1|Name=Gcaud2006.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=648bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:80406..81353- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAGCTCACGAACCGCGTGGCGTCGCTGATGCCCGTTGCGCCGGC
CGCGCCGCCCACGTTGCTCTTGGCGGGCTTCACCATGCATCGCGTGAAGA
GCGTTGATCCGGGTGCGGACACGGCACGCAAGATGACGGCGATTGGCTGC
GTGCGTGGGCGCGTTTTGGATGTGTGTACGGGCTTGGGTTATACGGCGAT
GGCCGCGGCGCGTTGCGCGGATGTCACGCAGGTCACAACCATAGAGCTTG
ATCCCGTGGTTCTGGCTATCGCGCGACGGAACCCTTGGTCGCGCGCGCTG
TTTAGCGAGCCGCTTATCGACTCGATTTGCGCGGATGCTACTTGTGTTCT
GCCTACATTGCATGACAAGTCGTTCGATGTTATCATTCATGACCCGCCGG
CGCGCGTTTTGGGCGGCGATTTGTACTCTTTGTCGTTCTATGAGCAACTG
CGTCGGGTGTGTACACGTAGTGGCACGCTATTTCATTACGTCGGTGATCC
GAACAGTCGCGAGAGCGGAAGATTGTACCGCGGAATTGTGGATAGGCTAC
AGAAAGCGGGATTCTCGAACATTCAACGTAGGCCGGATGCATACGGTCTG
GTGGCAAGCTCGCCGCTCAAGCAGCCACACAGCTGGCACAACGCATGA
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protein sequence of Gcaud2006.t1

>Gcaud2006.t1 ID=Gcaud2006.t1|Name=Gcaud2006.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=216bp
MSELTNRVASLMPVAPAAPPTLLLAGFTMHRVKSVDPGADTARKMTAIGC
VRGRVLDVCTGLGYTAMAAARCADVTQVTTIELDPVVLAIARRNPWSRAL
FSEPLIDSICADATCVLPTLHDKSFDVIIHDPPARVLGGDLYSLSFYEQL
RRVCTRSGTLFHYVGDPNSRESGRLYRGIVDRLQKAGFSNIQRRPDAYGL
VASSPLKQPHSWHNA*
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mRNA from alignment at NODE_5_length_105932_cov_4.447794:80406..81353-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2006.t1 ID=Gcaud2006.t1|Name=Gcaud2006.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=948bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:80406..81353- (Gracilaria caudata M_176_S67 male)
ATGAGCGAGCTCACGAACCGCGTGGCGTCGCTGATGCCCGTTGCGCCGGC
CGCGCCGCCCACGTTGCTCTTGGCGGGCTTCACCATGCATCGCGTGAAGA
GCGTTGATCCGGGTGCGGACACGGCACGCAAGATGACGGCGATTGGCTGC
GTGCGTGGGCGCGTTTTGGATGTGTGTACGGGCTTGGGTTATACGGCGAT
GGCCGCGGCGCGTTGCGCGGATGTCACGCAGGTCACAACCATAGAGCTTG
ATCCCGTGGTTCTGGCTATCGCGCGACGGAACCCTTGGTCGCGCGCGCTG
TTTAGCGAGCCGCTTATCGACTCGATTTGCGCGGATGCTACTTGTGTTCT
GCCTACATTGCATGACAAGTCGTTCGATGTTATCATTCATGACCCGCCGG
CGCGCGTTTTGGGCGGCGATTTGTACTCTTTGTCGTTCTATGAGCAACTG
CGTCGGGTGTGTACACGTAGTGGCACGCTATTTCATTACGTCGGTGATCC
GAACAGTCGCGAGAGCGGAAGATTGTACCGCGGAATTGTGGATAGGCTAC
AGAAAGCGGGATTCTCGAACATTCAACGTAGGCCGGATGCATACGGTCTG
GTGGCAAGCTGTACGTGATGTACTTCTTCGTTCGCCGTTGTGCGACGTGG
CTGCAAAATGCATTTGTTGGATTGATTTCTCACAAGTGAACAGTCAGTTG
CAATTGAAGGCTCGTTCACATAAGCTTTGCTCAACGCGAGCGGTTGCATC
GCAGCGGTTGCATCATACCGAACTATCTATCACAGACTGACAACACGCCG
CAGAGAAATCAGGCACGCAGCGCAGGAAACGACAATGCCCATCTGCACCA
GCAGTGCCCAAGCCTTACTAAACGTCTAACGTCTGGTTGTTTTCTCTCGT
ACACGCGCAGCGCCGCTCAAGCAGCCACACAGCTGGCACAACGCATGA
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Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:80406..81353-

>Gcaud2006.t1 ID=Gcaud2006.t1|Name=Gcaud2006.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=648bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:80406..81353- (Gracilaria caudata M_176_S67 male)
ATGAGCGAGCTCACGAACCGCGTGGCGTCGCTGATGCCCGTTGCGCCGGC
CGCGCCGCCCACGTTGCTCTTGGCGGGCTTCACCATGCATCGCGTGAAGA
GCGTTGATCCGGGTGCGGACACGGCACGCAAGATGACGGCGATTGGCTGC
GTGCGTGGGCGCGTTTTGGATGTGTGTACGGGCTTGGGTTATACGGCGAT
GGCCGCGGCGCGTTGCGCGGATGTCACGCAGGTCACAACCATAGAGCTTG
ATCCCGTGGTTCTGGCTATCGCGCGACGGAACCCTTGGTCGCGCGCGCTG
TTTAGCGAGCCGCTTATCGACTCGATTTGCGCGGATGCTACTTGTGTTCT
GCCTACATTGCATGACAAGTCGTTCGATGTTATCATTCATGACCCGCCGG
CGCGCGTTTTGGGCGGCGATTTGTACTCTTTGTCGTTCTATGAGCAACTG
CGTCGGGTGTGTACACGTAGTGGCACGCTATTTCATTACGTCGGTGATCC
GAACAGTCGCGAGAGCGGAAGATTGTACCGCGGAATTGTGGATAGGCTAC
AGAAAGCGGGATTCTCGAACATTCAACGTAGGCCGGATGCATACGGTCTG
GTGGCAAGCTCGCCGCTCAAGCAGCCACACAGCTGGCACAACGCATGA
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