Gcaud2001.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2001.t1
Unique Name	Gcaud2001.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	510

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:68102..69631 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	99598.Cal7507_2667
PFAMs	FAD_binding_3
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00046
KEGG ko	ko:K00486
KEGG Reaction	R01960
KEGG Pathway	ko00380,ko01100,map00380,map01100
KEGG Module	M00038
Evalue	2.37e-37
EggNOG OGs	COG0654@1\|root,COG0654@2\|Bacteria,1G3KH@1117\|Cyanobacteria,1HJEU@1161\|Nostocales
EC	1.14.13.9
Description	PFAM FAD binding domain
COG category	CH
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2001	Gcaud2001	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 68102..69631 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2001.t1.start1	Gcaud2001.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 68102..68104 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2001.t1.CDS1	Gcaud2001.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 68102..69631 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2001.t1.exon1	Gcaud2001.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 68102..69631 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2001.t1.stop1	Gcaud2001.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 69629..69631 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2001.t1	Gcaud2001.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 68102..69631 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:68102..69631+
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:68102..69631+

mRNA sequence

>Gcaud2001.t1 ID=Gcaud2001.t1|Name=Gcaud2001.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp
MATSLNQNKSTTPDAVRDANTVIVGGGPTGLLTAIFMAQRNIPVTVVEQD
DDLSRFDPLKAYALGINHRGLRTLGEFPSLLQAIKERGVPYRALRQTNLN
ADGTSKELTNGMSFEGPTSRIFHTRISLVELLQEYSKNFKTLTLLKQTRV
TNVAYGDTGEMQVYLRCAEEQYGIRTKLLLACDGKNSIVSKTLRKAAINN
SDLFQSSHGLGENSLPTPTTGRLVKSIALHEEYVANELTNDSNLPEETVT
IRRILPKRGLSSNKAFWFTLFPMSSDMSNRCGGRIATTVQPAESALWSLK
TVDQGYELFDEVLPQLKARSYVSPENMKKFVEAKPLRLPNSTRVESLVVQ
VGDSTAAGGVVFLGDAAHSFPPDRGQGLNSAWEDVGVLMKVLDALSSDST
IKEFVEGYEMERGNDVRALIEYVRRSTGFVAERLSWSEVALQVVSSRLRS
ILSKRLPRWFSPSLTELVSRECSFSEAIRLYDETTVRLWACGISVIALPL
LGLAAVLKH*

spliced messenger RNA

>Gcaud2001.t1 ID=Gcaud2001.t1|Name=Gcaud2001.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:68102..69631+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACATCATTGAATCAGAACAAGAGCACCACCCCGGATGCTGTTCG
AGATGCAAATACGGTAATCGTCGGGGGTGGGCCGACTGGACTTCTCACCG
CAATATTCATGGCCCAACGAAACATTCCTGTAACTGTAGTGGAACAAGAT
GACGACCTCAGCCGCTTTGATCCATTGAAAGCCTACGCACTTGGGATTAA
CCATCGTGGTTTGCGGACATTGGGAGAGTTTCCTTCCCTATTACAAGCCA
TAAAAGAGCGTGGTGTACCTTACCGAGCTTTGCGCCAAACCAACTTGAAC
GCCGATGGTACCTCGAAGGAATTAACAAATGGCATGAGCTTTGAAGGCCC
AACCTCTCGTATTTTCCACACCAGGATCTCTCTTGTTGAATTACTTCAAG
AATACTCGAAGAACTTCAAAACCCTGACACTGCTGAAGCAAACTAGAGTC
ACTAATGTGGCTTATGGTGACACTGGAGAGATGCAAGTGTACTTGAGATG
TGCTGAAGAGCAATATGGTATCCGCACAAAGCTCCTACTCGCCTGTGATG
GAAAGAATAGCATTGTGAGTAAAACTCTCCGTAAGGCGGCCATTAATAAC
AGTGATCTATTTCAGAGTTCGCACGGGCTAGGAGAAAACTCGCTCCCTAC
TCCCACTACTGGAAGGCTTGTTAAGTCAATTGCTTTACATGAGGAATACG
TAGCTAACGAACTTACTAACGATAGCAATCTCCCTGAAGAAACTGTCACC
ATACGTCGCATATTACCAAAGAGAGGACTCTCAAGTAACAAAGCGTTTTG
GTTTACTCTGTTTCCTATGAGCTCTGACATGAGCAATCGATGTGGTGGGA
GAATTGCGACCACGGTGCAACCGGCAGAAAGCGCATTGTGGTCGTTGAAG
ACTGTTGACCAGGGCTACGAATTATTCGACGAAGTACTACCTCAGCTCAA
AGCGCGTTCATATGTATCGCCGGAAAACATGAAGAAGTTCGTGGAGGCCA
AGCCACTAAGACTGCCCAACTCGACGCGTGTGGAATCTTTGGTGGTTCAA
GTGGGTGATAGTACTGCAGCGGGTGGGGTGGTATTCCTCGGAGACGCGGC
ACATTCATTTCCACCAGACCGGGGCCAGGGGTTAAATTCAGCATGGGAGG
ACGTGGGAGTTCTGATGAAAGTGTTGGATGCGTTGAGTTCTGATAGTACG
ATCAAGGAGTTTGTTGAAGGGTATGAAATGGAACGTGGAAACGACGTGAG
AGCGTTGATAGAATATGTACGCAGATCTACAGGCTTTGTTGCTGAGCGAT
TGTCATGGTCGGAGGTTGCGTTGCAAGTGGTGAGCTCGAGATTACGCAGT
ATACTTTCAAAACGACTTCCACGGTGGTTTTCGCCGAGTTTGACGGAACT
AGTTTCGAGAGAGTGCTCGTTTTCAGAGGCGATTCGATTGTACGATGAGA
CGACGGTGCGACTGTGGGCTTGTGGAATTTCAGTGATCGCTTTACCTCTC
TTGGGTTTGGCTGCGGTTCTCAAGCATTGA

protein sequence of Gcaud2001.t1

>Gcaud2001.t1 ID=Gcaud2001.t1|Name=Gcaud2001.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=510bp
MATSLNQNKSTTPDAVRDANTVIVGGGPTGLLTAIFMAQRNIPVTVVEQD
DDLSRFDPLKAYALGINHRGLRTLGEFPSLLQAIKERGVPYRALRQTNLN
ADGTSKELTNGMSFEGPTSRIFHTRISLVELLQEYSKNFKTLTLLKQTRV
TNVAYGDTGEMQVYLRCAEEQYGIRTKLLLACDGKNSIVSKTLRKAAINN
SDLFQSSHGLGENSLPTPTTGRLVKSIALHEEYVANELTNDSNLPEETVT
IRRILPKRGLSSNKAFWFTLFPMSSDMSNRCGGRIATTVQPAESALWSLK
TVDQGYELFDEVLPQLKARSYVSPENMKKFVEAKPLRLPNSTRVESLVVQ
VGDSTAAGGVVFLGDAAHSFPPDRGQGLNSAWEDVGVLMKVLDALSSDST
IKEFVEGYEMERGNDVRALIEYVRRSTGFVAERLSWSEVALQVVSSRLRS
ILSKRLPRWFSPSLTELVSRECSFSEAIRLYDETTVRLWACGISVIALPL
LGLAAVLKH*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:68102..69631+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2001.t1 ID=Gcaud2001.t1|Name=Gcaud2001.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:68102..69631+ (Gracilaria caudata M_176_S67 male)
ATGGCGACATCATTGAATCAGAACAAGAGCACCACCCCGGATGCTGTTCG
AGATGCAAATACGGTAATCGTCGGGGGTGGGCCGACTGGACTTCTCACCG
CAATATTCATGGCCCAACGAAACATTCCTGTAACTGTAGTGGAACAAGAT
GACGACCTCAGCCGCTTTGATCCATTGAAAGCCTACGCACTTGGGATTAA
CCATCGTGGTTTGCGGACATTGGGAGAGTTTCCTTCCCTATTACAAGCCA
TAAAAGAGCGTGGTGTACCTTACCGAGCTTTGCGCCAAACCAACTTGAAC
GCCGATGGTACCTCGAAGGAATTAACAAATGGCATGAGCTTTGAAGGCCC
AACCTCTCGTATTTTCCACACCAGGATCTCTCTTGTTGAATTACTTCAAG
AATACTCGAAGAACTTCAAAACCCTGACACTGCTGAAGCAAACTAGAGTC
ACTAATGTGGCTTATGGTGACACTGGAGAGATGCAAGTGTACTTGAGATG
TGCTGAAGAGCAATATGGTATCCGCACAAAGCTCCTACTCGCCTGTGATG
GAAAGAATAGCATTGTGAGTAAAACTCTCCGTAAGGCGGCCATTAATAAC
AGTGATCTATTTCAGAGTTCGCACGGGCTAGGAGAAAACTCGCTCCCTAC
TCCCACTACTGGAAGGCTTGTTAAGTCAATTGCTTTACATGAGGAATACG
TAGCTAACGAACTTACTAACGATAGCAATCTCCCTGAAGAAACTGTCACC
ATACGTCGCATATTACCAAAGAGAGGACTCTCAAGTAACAAAGCGTTTTG
GTTTACTCTGTTTCCTATGAGCTCTGACATGAGCAATCGATGTGGTGGGA
GAATTGCGACCACGGTGCAACCGGCAGAAAGCGCATTGTGGTCGTTGAAG
ACTGTTGACCAGGGCTACGAATTATTCGACGAAGTACTACCTCAGCTCAA
AGCGCGTTCATATGTATCGCCGGAAAACATGAAGAAGTTCGTGGAGGCCA
AGCCACTAAGACTGCCCAACTCGACGCGTGTGGAATCTTTGGTGGTTCAA
GTGGGTGATAGTACTGCAGCGGGTGGGGTGGTATTCCTCGGAGACGCGGC
ACATTCATTTCCACCAGACCGGGGCCAGGGGTTAAATTCAGCATGGGAGG
ACGTGGGAGTTCTGATGAAAGTGTTGGATGCGTTGAGTTCTGATAGTACG
ATCAAGGAGTTTGTTGAAGGGTATGAAATGGAACGTGGAAACGACGTGAG
AGCGTTGATAGAATATGTACGCAGATCTACAGGCTTTGTTGCTGAGCGAT
TGTCATGGTCGGAGGTTGCGTTGCAAGTGGTGAGCTCGAGATTACGCAGT
ATACTTTCAAAACGACTTCCACGGTGGTTTTCGCCGAGTTTGACGGAACT
AGTTTCGAGAGAGTGCTCGTTTTCAGAGGCGATTCGATTGTACGATGAGA
CGACGGTGCGACTGTGGGCTTGTGGAATTTCAGTGATCGCTTTACCTCTC
TTGGGTTTGGCTGCGGTTCTCAAGCATTGA

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:68102..69631+

>Gcaud2001.t1 ID=Gcaud2001.t1|Name=Gcaud2001.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1530bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:68102..69631+ (Gracilaria caudata M_176_S67 male)
ATGGCGACATCATTGAATCAGAACAAGAGCACCACCCCGGATGCTGTTCG
AGATGCAAATACGGTAATCGTCGGGGGTGGGCCGACTGGACTTCTCACCG
CAATATTCATGGCCCAACGAAACATTCCTGTAACTGTAGTGGAACAAGAT
GACGACCTCAGCCGCTTTGATCCATTGAAAGCCTACGCACTTGGGATTAA
CCATCGTGGTTTGCGGACATTGGGAGAGTTTCCTTCCCTATTACAAGCCA
TAAAAGAGCGTGGTGTACCTTACCGAGCTTTGCGCCAAACCAACTTGAAC
GCCGATGGTACCTCGAAGGAATTAACAAATGGCATGAGCTTTGAAGGCCC
AACCTCTCGTATTTTCCACACCAGGATCTCTCTTGTTGAATTACTTCAAG
AATACTCGAAGAACTTCAAAACCCTGACACTGCTGAAGCAAACTAGAGTC
ACTAATGTGGCTTATGGTGACACTGGAGAGATGCAAGTGTACTTGAGATG
TGCTGAAGAGCAATATGGTATCCGCACAAAGCTCCTACTCGCCTGTGATG
GAAAGAATAGCATTGTGAGTAAAACTCTCCGTAAGGCGGCCATTAATAAC
AGTGATCTATTTCAGAGTTCGCACGGGCTAGGAGAAAACTCGCTCCCTAC
TCCCACTACTGGAAGGCTTGTTAAGTCAATTGCTTTACATGAGGAATACG
TAGCTAACGAACTTACTAACGATAGCAATCTCCCTGAAGAAACTGTCACC
ATACGTCGCATATTACCAAAGAGAGGACTCTCAAGTAACAAAGCGTTTTG
GTTTACTCTGTTTCCTATGAGCTCTGACATGAGCAATCGATGTGGTGGGA
GAATTGCGACCACGGTGCAACCGGCAGAAAGCGCATTGTGGTCGTTGAAG
ACTGTTGACCAGGGCTACGAATTATTCGACGAAGTACTACCTCAGCTCAA
AGCGCGTTCATATGTATCGCCGGAAAACATGAAGAAGTTCGTGGAGGCCA
AGCCACTAAGACTGCCCAACTCGACGCGTGTGGAATCTTTGGTGGTTCAA
GTGGGTGATAGTACTGCAGCGGGTGGGGTGGTATTCCTCGGAGACGCGGC
ACATTCATTTCCACCAGACCGGGGCCAGGGGTTAAATTCAGCATGGGAGG
ACGTGGGAGTTCTGATGAAAGTGTTGGATGCGTTGAGTTCTGATAGTACG
ATCAAGGAGTTTGTTGAAGGGTATGAAATGGAACGTGGAAACGACGTGAG
AGCGTTGATAGAATATGTACGCAGATCTACAGGCTTTGTTGCTGAGCGAT
TGTCATGGTCGGAGGTTGCGTTGCAAGTGGTGAGCTCGAGATTACGCAGT
ATACTTTCAAAACGACTTCCACGGTGGTTTTCGCCGAGTTTGACGGAACT
AGTTTCGAGAGAGTGCTCGTTTTCAGAGGCGATTCGATTGTACGATGAGA
CGACGGTGCGACTGTGGGCTTGTGGAATTTCAGTGATCGCTTTACCTCTC
TTGGGTTTGGCTGCGGTTCTCAAGCATTGA