Gcaud200.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud200.t1
Unique NameGcaud200.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1898_length_7812_cov_5.919700contigNODE_1898_length_7812_cov_5.919700:6587..7030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud200Gcaud200Gracilaria caudata M_176_S67 malegeneNODE_1898_length_7812_cov_5.919700 6587..7030 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud200.t1.start1Gcaud200.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1898_length_7812_cov_5.919700 6587..6589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud200.t1.CDS1Gcaud200.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1898_length_7812_cov_5.919700 6587..7030 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud200.t1.exon1Gcaud200.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1898_length_7812_cov_5.919700 6587..7030 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud200.t1.stop1Gcaud200.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1898_length_7812_cov_5.919700 7028..7030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud200.t1Gcaud200.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1898_length_7812_cov_5.919700 6587..7030 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud200.t1 ID=Gcaud200.t1|Name=Gcaud200.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=148bp
MSSTRVSVYEKMFILTINDGIPLQCAEAYLFVYRTPNVTPMLIKYPKIEI
PLSALGNSGSLDAETKYCESEQPKRKQEMFPVTETRPKFIAAVKKMLPIM
LRIRDFGCTENASGFIQQVQGRAYDNTDLEAVISYAHSVAYQYGFCV*
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spliced messenger RNA

>Gcaud200.t1 ID=Gcaud200.t1|Name=Gcaud200.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=444bp|location=Sequence derived from alignment at NODE_1898_length_7812_cov_5.919700:6587..7030+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCCACTCGCGTCTCCGTTTACGAGAAGATGTTCATTCTCACTAT
CAATGACGGAATTCCATTGCAGTGTGCTGAGGCGTACCTATTCGTGTACC
GTACACCCAACGTAACTCCCATGCTCATCAAGTATCCCAAGATCGAAATT
CCGCTTTCTGCACTCGGTAACTCCGGCTCTTTGGACGCTGAGACCAAATA
CTGTGAATCTGAGCAGCCTAAGAGGAAGCAGGAAATGTTCCCTGTTACCG
AAACCAGGCCCAAGTTCATTGCGGCTGTGAAGAAGATGTTGCCCATCATG
CTCAGGATTAGGGATTTCGGGTGTACGGAGAATGCAAGCGGTTTTATCCA
GCAGGTTCAAGGAAGGGCGTACGACAATACTGATCTGGAGGCCGTTATTT
CTTATGCTCATAGCGTGGCTTATCAGTATGGCTTCTGCGTGTAG
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protein sequence of Gcaud200.t1

>Gcaud200.t1 ID=Gcaud200.t1|Name=Gcaud200.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=148bp
MSSTRVSVYEKMFILTINDGIPLQCAEAYLFVYRTPNVTPMLIKYPKIEI
PLSALGNSGSLDAETKYCESEQPKRKQEMFPVTETRPKFIAAVKKMLPIM
LRIRDFGCTENASGFIQQVQGRAYDNTDLEAVISYAHSVAYQYGFCV*
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mRNA from alignment at NODE_1898_length_7812_cov_5.919700:6587..7030+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud200.t1 ID=Gcaud200.t1|Name=Gcaud200.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=444bp|location=Sequence derived from alignment at NODE_1898_length_7812_cov_5.919700:6587..7030+ (Gracilaria caudata M_176_S67 male)
ATGAGTTCCACTCGCGTCTCCGTTTACGAGAAGATGTTCATTCTCACTAT
CAATGACGGAATTCCATTGCAGTGTGCTGAGGCGTACCTATTCGTGTACC
GTACACCCAACGTAACTCCCATGCTCATCAAGTATCCCAAGATCGAAATT
CCGCTTTCTGCACTCGGTAACTCCGGCTCTTTGGACGCTGAGACCAAATA
CTGTGAATCTGAGCAGCCTAAGAGGAAGCAGGAAATGTTCCCTGTTACCG
AAACCAGGCCCAAGTTCATTGCGGCTGTGAAGAAGATGTTGCCCATCATG
CTCAGGATTAGGGATTTCGGGTGTACGGAGAATGCAAGCGGTTTTATCCA
GCAGGTTCAAGGAAGGGCGTACGACAATACTGATCTGGAGGCCGTTATTT
CTTATGCTCATAGCGTGGCTTATCAGTATGGCTTCTGCGTGTAG
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Coding sequence (CDS) from alignment at NODE_1898_length_7812_cov_5.919700:6587..7030+

>Gcaud200.t1 ID=Gcaud200.t1|Name=Gcaud200.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=444bp|location=Sequence derived from alignment at NODE_1898_length_7812_cov_5.919700:6587..7030+ (Gracilaria caudata M_176_S67 male)
ATGAGTTCCACTCGCGTCTCCGTTTACGAGAAGATGTTCATTCTCACTAT
CAATGACGGAATTCCATTGCAGTGTGCTGAGGCGTACCTATTCGTGTACC
GTACACCCAACGTAACTCCCATGCTCATCAAGTATCCCAAGATCGAAATT
CCGCTTTCTGCACTCGGTAACTCCGGCTCTTTGGACGCTGAGACCAAATA
CTGTGAATCTGAGCAGCCTAAGAGGAAGCAGGAAATGTTCCCTGTTACCG
AAACCAGGCCCAAGTTCATTGCGGCTGTGAAGAAGATGTTGCCCATCATG
CTCAGGATTAGGGATTTCGGGTGTACGGAGAATGCAAGCGGTTTTATCCA
GCAGGTTCAAGGAAGGGCGTACGACAATACTGATCTGGAGGCCGTTATTT
CTTATGCTCATAGCGTGGCTTATCAGTATGGCTTCTGCGTGTAG
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