Gcaud1998.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1998.t1
Unique Name	Gcaud1998.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	510

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:61136..62665 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	99598.Cal7507_2667
PFAMs	FAD_binding_3
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00046
KEGG ko	ko:K00486
KEGG Reaction	R01960
KEGG Pathway	ko00380,ko01100,map00380,map01100
KEGG Module	M00038
Evalue	7.23e-32
EggNOG OGs	COG0654@1\|root,COG0654@2\|Bacteria,1G3KH@1117\|Cyanobacteria,1HJEU@1161\|Nostocales
EC	1.14.13.9
Description	PFAM FAD binding domain
COG category	CH
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1998	Gcaud1998	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 61136..62665 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1998.t1.stop1	Gcaud1998.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 61136..61138 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1998.t1.CDS1	Gcaud1998.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 61136..62665 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1998.t1.exon1	Gcaud1998.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 61136..62665 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1998.t1.start1	Gcaud1998.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 62663..62665 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1998.t1	Gcaud1998.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 61136..62665 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:61136..62665-
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:61136..62665-

mRNA sequence

>Gcaud1998.t1 ID=Gcaud1998.t1|Name=Gcaud1998.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp
MATPLNQKKSNIPDAVRDANTVIVGGGPTGLLTAIFMAQRNIPVTVVEQD
DDLSRFDPLKACALGITRRGLGALRESPSLLRAVKQSGVPYRAIRRTSLN
ADGVLKEFRSAMTSDGPVSRIFHTRISLVELLQEFSRDFKTLTVLKQTRV
TDVAYDDSGEMQVCLSCGEEQYGIRTKLLLACDGKNSIVSKTLRKAAIEN
NDLFQSSHGLGEDSLPTPSTGKFVKSIALPERYVANELINESILPEETVA
THLISPKKGVSSNKAFWFTLFPMSSAMSTRCGGRIATTVQPAESALWSLK
TVDQGYKLFDEVLPQLKARSYVPPENMKKFVEAKPLRLPNSTRVESLVVQ
VGDGTAAGGVVFLGDAAHSFPPDTGQGLNAAWEDVEVLMKVLDALSLDST
IKEFVEGYEMERGKDVRALLDVVRRFAGFPADRVSRMKVAVQVVSSRLRS
VLAKRLPLWFSPSLTELVLSDRSFSEVIRLYDETTVRLWACGISVIVLPV
LGWIAILWH*

spliced messenger RNA

>Gcaud1998.t1 ID=Gcaud1998.t1|Name=Gcaud1998.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:61136..62665- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACACCATTGAATCAGAAAAAGAGTAATATCCCGGATGCCGTTCG
AGATGCAAATACGGTAATCGTCGGAGGTGGGCCGACTGGGCTTCTTACCG
CAATTTTCATGGCCCAACGAAACATTCCTGTAACTGTGGTGGAACAAGAC
GATGACCTCAGCCGCTTTGATCCATTGAAGGCGTGCGCCCTTGGGATTAC
ACGTCGTGGTTTGGGGGCTCTGCGAGAGTCTCCTTCTCTATTGCGAGCCG
TAAAACAAAGTGGTGTACCTTACCGAGCTATACGCCGAACCAGCTTGAAT
GCCGATGGTGTTTTAAAGGAGTTCAGAAGTGCCATGACTTCTGATGGACC
AGTTTCTCGTATTTTCCACACCAGGATCTCTCTCGTTGAATTACTTCAAG
AATTCTCGAGAGACTTCAAAACCCTGACTGTACTGAAGCAAACTAGGGTC
ACTGATGTGGCTTATGATGACTCTGGAGAGATGCAAGTGTGCTTGAGCTG
TGGTGAAGAGCAATATGGCATCCGCACAAAGCTCCTGCTCGCCTGTGATG
GAAAGAATAGCATTGTGAGCAAAACTCTCCGTAAGGCCGCCATTGAGAAC
AATGATCTATTTCAGAGTTCGCACGGACTAGGAGAAGATTCGCTGCCTAC
CCCGTCTACTGGAAAGTTTGTTAAGTCAATTGCGTTGCCCGAAAGATACG
TAGCCAATGAGCTTATTAATGAAAGTATTCTCCCCGAAGAAACTGTCGCT
ACACATCTCATATCACCGAAGAAAGGAGTCTCAAGCAACAAGGCATTTTG
GTTTACTTTGTTTCCCATGAGCTCTGCAATGAGCACTCGTTGTGGGGGCA
GAATTGCGACAACAGTACAACCGGCAGAAAGCGCATTGTGGTCGTTGAAG
ACTGTTGACCAAGGCTACAAATTATTCGACGAAGTACTACCTCAGCTCAA
AGCGCGTTCATATGTACCGCCGGAGAACATGAAGAAGTTCGTGGAGGCCA
AGCCACTAAGACTGCCCAACTCGACGCGTGTGGAATCTTTGGTGGTTCAA
GTGGGTGATGGTACTGCAGCGGGTGGGGTGGTATTCCTCGGAGACGCAGC
ACATTCATTTCCACCAGACACGGGTCAGGGTTTGAATGCAGCATGGGAGG
ACGTGGAAGTGCTAATGAAGGTTTTGGATGCGTTGAGTTTAGATAGTACG
ATCAAGGAGTTTGTTGAAGGGTACGAAATGGAACGTGGAAAGGACGTGAG
AGCATTGTTGGATGTTGTGCGCAGATTTGCAGGCTTTCCTGCTGATCGAG
TATCGCGTATGAAGGTGGCAGTGCAAGTGGTGAGCTCGAGATTACGCAGT
GTCCTTGCAAAACGACTTCCACTATGGTTTTCGCCGAGTCTGACGGAACT
GGTGTTGAGCGATCGCTCGTTTTCTGAAGTGATTCGATTGTACGATGAGA
CGACGGTGCGACTGTGGGCTTGTGGAATTTCAGTGATCGTTTTACCTGTC
TTGGGGTGGATTGCGATTCTCTGGCATTGA

protein sequence of Gcaud1998.t1

>Gcaud1998.t1 ID=Gcaud1998.t1|Name=Gcaud1998.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=510bp
MATPLNQKKSNIPDAVRDANTVIVGGGPTGLLTAIFMAQRNIPVTVVEQD
DDLSRFDPLKACALGITRRGLGALRESPSLLRAVKQSGVPYRAIRRTSLN
ADGVLKEFRSAMTSDGPVSRIFHTRISLVELLQEFSRDFKTLTVLKQTRV
TDVAYDDSGEMQVCLSCGEEQYGIRTKLLLACDGKNSIVSKTLRKAAIEN
NDLFQSSHGLGEDSLPTPSTGKFVKSIALPERYVANELINESILPEETVA
THLISPKKGVSSNKAFWFTLFPMSSAMSTRCGGRIATTVQPAESALWSLK
TVDQGYKLFDEVLPQLKARSYVPPENMKKFVEAKPLRLPNSTRVESLVVQ
VGDGTAAGGVVFLGDAAHSFPPDTGQGLNAAWEDVEVLMKVLDALSLDST
IKEFVEGYEMERGKDVRALLDVVRRFAGFPADRVSRMKVAVQVVSSRLRS
VLAKRLPLWFSPSLTELVLSDRSFSEVIRLYDETTVRLWACGISVIVLPV
LGWIAILWH*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:61136..62665-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1998.t1 ID=Gcaud1998.t1|Name=Gcaud1998.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:61136..62665- (Gracilaria caudata M_176_S67 male)
ATGGCGACACCATTGAATCAGAAAAAGAGTAATATCCCGGATGCCGTTCG
AGATGCAAATACGGTAATCGTCGGAGGTGGGCCGACTGGGCTTCTTACCG
CAATTTTCATGGCCCAACGAAACATTCCTGTAACTGTGGTGGAACAAGAC
GATGACCTCAGCCGCTTTGATCCATTGAAGGCGTGCGCCCTTGGGATTAC
ACGTCGTGGTTTGGGGGCTCTGCGAGAGTCTCCTTCTCTATTGCGAGCCG
TAAAACAAAGTGGTGTACCTTACCGAGCTATACGCCGAACCAGCTTGAAT
GCCGATGGTGTTTTAAAGGAGTTCAGAAGTGCCATGACTTCTGATGGACC
AGTTTCTCGTATTTTCCACACCAGGATCTCTCTCGTTGAATTACTTCAAG
AATTCTCGAGAGACTTCAAAACCCTGACTGTACTGAAGCAAACTAGGGTC
ACTGATGTGGCTTATGATGACTCTGGAGAGATGCAAGTGTGCTTGAGCTG
TGGTGAAGAGCAATATGGCATCCGCACAAAGCTCCTGCTCGCCTGTGATG
GAAAGAATAGCATTGTGAGCAAAACTCTCCGTAAGGCCGCCATTGAGAAC
AATGATCTATTTCAGAGTTCGCACGGACTAGGAGAAGATTCGCTGCCTAC
CCCGTCTACTGGAAAGTTTGTTAAGTCAATTGCGTTGCCCGAAAGATACG
TAGCCAATGAGCTTATTAATGAAAGTATTCTCCCCGAAGAAACTGTCGCT
ACACATCTCATATCACCGAAGAAAGGAGTCTCAAGCAACAAGGCATTTTG
GTTTACTTTGTTTCCCATGAGCTCTGCAATGAGCACTCGTTGTGGGGGCA
GAATTGCGACAACAGTACAACCGGCAGAAAGCGCATTGTGGTCGTTGAAG
ACTGTTGACCAAGGCTACAAATTATTCGACGAAGTACTACCTCAGCTCAA
AGCGCGTTCATATGTACCGCCGGAGAACATGAAGAAGTTCGTGGAGGCCA
AGCCACTAAGACTGCCCAACTCGACGCGTGTGGAATCTTTGGTGGTTCAA
GTGGGTGATGGTACTGCAGCGGGTGGGGTGGTATTCCTCGGAGACGCAGC
ACATTCATTTCCACCAGACACGGGTCAGGGTTTGAATGCAGCATGGGAGG
ACGTGGAAGTGCTAATGAAGGTTTTGGATGCGTTGAGTTTAGATAGTACG
ATCAAGGAGTTTGTTGAAGGGTACGAAATGGAACGTGGAAAGGACGTGAG
AGCATTGTTGGATGTTGTGCGCAGATTTGCAGGCTTTCCTGCTGATCGAG
TATCGCGTATGAAGGTGGCAGTGCAAGTGGTGAGCTCGAGATTACGCAGT
GTCCTTGCAAAACGACTTCCACTATGGTTTTCGCCGAGTCTGACGGAACT
GGTGTTGAGCGATCGCTCGTTTTCTGAAGTGATTCGATTGTACGATGAGA
CGACGGTGCGACTGTGGGCTTGTGGAATTTCAGTGATCGTTTTACCTGTC
TTGGGGTGGATTGCGATTCTCTGGCATTGA

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:61136..62665-

>Gcaud1998.t1 ID=Gcaud1998.t1|Name=Gcaud1998.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1530bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:61136..62665- (Gracilaria caudata M_176_S67 male)
ATGGCGACACCATTGAATCAGAAAAAGAGTAATATCCCGGATGCCGTTCG
AGATGCAAATACGGTAATCGTCGGAGGTGGGCCGACTGGGCTTCTTACCG
CAATTTTCATGGCCCAACGAAACATTCCTGTAACTGTGGTGGAACAAGAC
GATGACCTCAGCCGCTTTGATCCATTGAAGGCGTGCGCCCTTGGGATTAC
ACGTCGTGGTTTGGGGGCTCTGCGAGAGTCTCCTTCTCTATTGCGAGCCG
TAAAACAAAGTGGTGTACCTTACCGAGCTATACGCCGAACCAGCTTGAAT
GCCGATGGTGTTTTAAAGGAGTTCAGAAGTGCCATGACTTCTGATGGACC
AGTTTCTCGTATTTTCCACACCAGGATCTCTCTCGTTGAATTACTTCAAG
AATTCTCGAGAGACTTCAAAACCCTGACTGTACTGAAGCAAACTAGGGTC
ACTGATGTGGCTTATGATGACTCTGGAGAGATGCAAGTGTGCTTGAGCTG
TGGTGAAGAGCAATATGGCATCCGCACAAAGCTCCTGCTCGCCTGTGATG
GAAAGAATAGCATTGTGAGCAAAACTCTCCGTAAGGCCGCCATTGAGAAC
AATGATCTATTTCAGAGTTCGCACGGACTAGGAGAAGATTCGCTGCCTAC
CCCGTCTACTGGAAAGTTTGTTAAGTCAATTGCGTTGCCCGAAAGATACG
TAGCCAATGAGCTTATTAATGAAAGTATTCTCCCCGAAGAAACTGTCGCT
ACACATCTCATATCACCGAAGAAAGGAGTCTCAAGCAACAAGGCATTTTG
GTTTACTTTGTTTCCCATGAGCTCTGCAATGAGCACTCGTTGTGGGGGCA
GAATTGCGACAACAGTACAACCGGCAGAAAGCGCATTGTGGTCGTTGAAG
ACTGTTGACCAAGGCTACAAATTATTCGACGAAGTACTACCTCAGCTCAA
AGCGCGTTCATATGTACCGCCGGAGAACATGAAGAAGTTCGTGGAGGCCA
AGCCACTAAGACTGCCCAACTCGACGCGTGTGGAATCTTTGGTGGTTCAA
GTGGGTGATGGTACTGCAGCGGGTGGGGTGGTATTCCTCGGAGACGCAGC
ACATTCATTTCCACCAGACACGGGTCAGGGTTTGAATGCAGCATGGGAGG
ACGTGGAAGTGCTAATGAAGGTTTTGGATGCGTTGAGTTTAGATAGTACG
ATCAAGGAGTTTGTTGAAGGGTACGAAATGGAACGTGGAAAGGACGTGAG
AGCATTGTTGGATGTTGTGCGCAGATTTGCAGGCTTTCCTGCTGATCGAG
TATCGCGTATGAAGGTGGCAGTGCAAGTGGTGAGCTCGAGATTACGCAGT
GTCCTTGCAAAACGACTTCCACTATGGTTTTCGCCGAGTCTGACGGAACT
GGTGTTGAGCGATCGCTCGTTTTCTGAAGTGATTCGATTGTACGATGAGA
CGACGGTGCGACTGTGGGCTTGTGGAATTTCAGTGATCGTTTTACCTGTC
TTGGGGTGGATTGCGATTCTCTGGCATTGA