Gcaud1987.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1987.t1
Unique Name	Gcaud1987.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	744

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:23507..25738 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708565.1
PFAMs	ANTH
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20043,ko:K20044
Evalue	3.94e-45
EggNOG OGs	KOG0251@1\|root,KOG0251@2759\|Eukaryota
Description	Clathrin assembly protein
COG category	S
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1987	Gcaud1987	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 23507..25738 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1987.t1.stop1	Gcaud1987.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 23507..23509 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1987.t1.CDS1	Gcaud1987.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 23507..25738 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1987.t1.exon1	Gcaud1987.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 23507..25738 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1987.t1.start1	Gcaud1987.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 25736..25738 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1987.t1	Gcaud1987.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 23507..25738 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:23507..25738-
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:23507..25738-

mRNA sequence

>Gcaud1987.t1 ID=Gcaud1987.t1|Name=Gcaud1987.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=744bp
MSYDDYRTGRPPVPSTRPPIPRGSYDSLAGRMSEQPARGSLQRSQSARDS
SNTSAGRGASSASTSAAITTAQAAMASMRGNVNAMTNNAQVENPYVTNAY
ASTRAPPTSNYADVGDGMGGGMPMYASKSNVNFQSKMKDQVRQTMASIKG
DDWKIYCMKATNRENAAPKGKHVRVIMEALRYGGSISNRESPAGGIFYHL
RKRMMQNEWVVVVKALTIFHHIFRDGNEKFVAHIANHYRAMFKMEFFGDS
TSDGLAFSGFIRSYGAYLEQWLTMKAAINFPPKNSREDDQALTNRYGQAP
IEELLAALPILMDTFEALTSVRLDGQARYSPVTMPARSMVLRDLSLVVTT
MQCGVIRLLDLFFNLEIPNAIIALDVYKRFVTLITNAKPFFDLAQSLSSK
WRAPELSSISFELTESMQEYIDKGPQKDEVKEPQFSDDEEYEPEPEPEPV
PEDYYEPEPEYYSEEEPEIIPPPPRLPTPPSSTSSESSSEEEESSSEEED
DIDILPSAPEPPPPPKPFDPLRDLLGIESGVGPATAQPGQTQVPQQNMAL
QVYGAGGPMPGMFQPAALENTVDDRVANVKGIMANSGWQHQQRSGFGVDG
SNMQLALYGAQTTPQQQAQQQAQQQAQQQMYNTMSLQQQQQMAAYQTMAA
YQTMAAQNQQLAMYQMQHAGMHGMNGMQPMGMAGAYTPVPRGNQSVPVMQ
SEQVKSQPGNYRVQKGTKPSRVNEDDLAFGPLIDQMKKTGISK*

spliced messenger RNA

>Gcaud1987.t1 ID=Gcaud1987.t1|Name=Gcaud1987.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2232bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:23507..25738- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTACGATGACTATCGAACCGGACGCCCGCCCGTACCGTCTACTCG
TCCCCCCATCCCAAGGGGCTCGTACGATTCTCTTGCCGGGCGCATGAGCG
AGCAGCCTGCTCGCGGCTCACTCCAGCGCTCCCAGTCCGCCCGAGACTCC
TCCAACACCTCCGCCGGTCGTGGCGCCTCCTCTGCATCCACTTCTGCCGC
CATTACCACCGCCCAGGCCGCCATGGCTTCCATGCGTGGTAATGTCAACG
CCATGACGAATAACGCCCAGGTTGAAAACCCCTACGTTACCAACGCTTAT
GCTTCCACACGCGCACCGCCCACCTCCAACTATGCCGATGTCGGCGATGG
CATGGGAGGGGGAATGCCGATGTACGCGTCTAAAAGCAACGTGAACTTTC
AGTCCAAGATGAAGGATCAGGTTCGTCAGACCATGGCGAGCATAAAGGGT
GATGACTGGAAGATCTACTGCATGAAGGCCACCAATCGTGAGAACGCGGC
TCCTAAAGGGAAGCACGTTCGCGTTATCATGGAAGCGCTTCGTTATGGTG
GTAGCATCTCGAATCGAGAAAGTCCCGCCGGCGGCATTTTCTATCATCTT
CGCAAGCGAATGATGCAGAACGAGTGGGTAGTCGTTGTGAAGGCGTTAAC
TATCTTTCACCACATTTTCCGTGACGGCAACGAGAAATTTGTCGCTCACA
TAGCCAACCACTATCGTGCCATGTTCAAGATGGAGTTCTTCGGCGATAGC
ACCTCAGATGGCTTAGCTTTCAGTGGATTCATCCGATCCTACGGTGCTTA
CTTAGAACAGTGGCTCACTATGAAGGCCGCCATTAATTTTCCTCCCAAGA
ACTCAAGAGAAGATGATCAGGCGCTTACTAACCGCTATGGACAAGCGCCC
ATTGAAGAACTGCTCGCCGCCCTTCCGATTCTCATGGATACGTTTGAAGC
GCTCACGTCAGTCCGATTGGACGGCCAGGCTCGTTATTCCCCTGTAACAA
TGCCAGCCCGATCGATGGTCTTGCGCGACTTGTCACTTGTCGTTACAACT
ATGCAATGCGGCGTTATCCGCCTTCTTGACTTGTTCTTCAACCTCGAGAT
TCCGAATGCCATCATTGCCTTAGATGTGTACAAACGTTTTGTCACTTTAA
TTACAAATGCGAAACCGTTCTTTGATCTCGCTCAATCACTGTCCTCAAAA
TGGCGAGCTCCCGAATTGAGCTCGATATCATTTGAACTGACTGAATCTAT
GCAGGAGTATATTGACAAAGGTCCGCAGAAAGATGAAGTTAAGGAGCCTC
AGTTTTCGGATGACGAAGAGTATGAACCTGAACCGGAACCGGAACCCGTT
CCAGAAGATTACTATGAGCCTGAGCCAGAGTATTATTCAGAAGAAGAACC
AGAAATAATACCGCCGCCACCCCGTCTCCCGACTCCTCCGTCGTCTACGT
CGTCAGAGTCCTCTTCCGAAGAAGAGGAGTCATCATCAGAAGAAGAAGAC
GACATTGACATTCTTCCTTCCGCTCCCGAACCACCACCGCCTCCAAAACC
ATTTGACCCGTTACGAGACCTACTTGGTATTGAGTCCGGCGTTGGTCCTG
CAACTGCTCAACCCGGTCAAACACAAGTTCCTCAACAAAATATGGCTCTT
CAAGTATATGGGGCCGGTGGTCCGATGCCAGGCATGTTCCAACCAGCTGC
GTTAGAGAACACAGTTGACGACCGTGTTGCTAATGTGAAAGGTATTATGG
CCAATTCTGGATGGCAGCACCAACAAAGAAGCGGATTCGGAGTGGATGGC
TCCAACATGCAGTTAGCACTGTATGGAGCCCAAACAACCCCGCAGCAGCA
AGCCCAGCAGCAAGCCCAGCAGCAAGCCCAACAGCAGATGTACAATACAA
TGTCTCTGCAACAGCAACAACAAATGGCGGCGTATCAGACAATGGCTGCG
TATCAGACAATGGCTGCGCAAAACCAGCAACTGGCAATGTATCAGATGCA
GCATGCCGGTATGCACGGAATGAACGGCATGCAACCGATGGGCATGGCAG
GTGCATATACCCCCGTCCCTCGAGGAAATCAATCAGTGCCAGTCATGCAA
TCTGAACAAGTGAAGTCGCAGCCTGGAAATTACCGTGTCCAGAAAGGCAC
AAAACCTTCAAGAGTGAATGAAGACGATCTTGCTTTCGGCCCCCTAATTG
ATCAGATGAAGAAGACGGGGATTAGCAAATAG

protein sequence of Gcaud1987.t1

>Gcaud1987.t1 ID=Gcaud1987.t1|Name=Gcaud1987.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=744bp
MSYDDYRTGRPPVPSTRPPIPRGSYDSLAGRMSEQPARGSLQRSQSARDS
SNTSAGRGASSASTSAAITTAQAAMASMRGNVNAMTNNAQVENPYVTNAY
ASTRAPPTSNYADVGDGMGGGMPMYASKSNVNFQSKMKDQVRQTMASIKG
DDWKIYCMKATNRENAAPKGKHVRVIMEALRYGGSISNRESPAGGIFYHL
RKRMMQNEWVVVVKALTIFHHIFRDGNEKFVAHIANHYRAMFKMEFFGDS
TSDGLAFSGFIRSYGAYLEQWLTMKAAINFPPKNSREDDQALTNRYGQAP
IEELLAALPILMDTFEALTSVRLDGQARYSPVTMPARSMVLRDLSLVVTT
MQCGVIRLLDLFFNLEIPNAIIALDVYKRFVTLITNAKPFFDLAQSLSSK
WRAPELSSISFELTESMQEYIDKGPQKDEVKEPQFSDDEEYEPEPEPEPV
PEDYYEPEPEYYSEEEPEIIPPPPRLPTPPSSTSSESSSEEEESSSEEED
DIDILPSAPEPPPPPKPFDPLRDLLGIESGVGPATAQPGQTQVPQQNMAL
QVYGAGGPMPGMFQPAALENTVDDRVANVKGIMANSGWQHQQRSGFGVDG
SNMQLALYGAQTTPQQQAQQQAQQQAQQQMYNTMSLQQQQQMAAYQTMAA
YQTMAAQNQQLAMYQMQHAGMHGMNGMQPMGMAGAYTPVPRGNQSVPVMQ
SEQVKSQPGNYRVQKGTKPSRVNEDDLAFGPLIDQMKKTGISK*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:23507..25738-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1987.t1 ID=Gcaud1987.t1|Name=Gcaud1987.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2232bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:23507..25738- (Gracilaria caudata M_176_S67 male)
ATGTCGTACGATGACTATCGAACCGGACGCCCGCCCGTACCGTCTACTCG
TCCCCCCATCCCAAGGGGCTCGTACGATTCTCTTGCCGGGCGCATGAGCG
AGCAGCCTGCTCGCGGCTCACTCCAGCGCTCCCAGTCCGCCCGAGACTCC
TCCAACACCTCCGCCGGTCGTGGCGCCTCCTCTGCATCCACTTCTGCCGC
CATTACCACCGCCCAGGCCGCCATGGCTTCCATGCGTGGTAATGTCAACG
CCATGACGAATAACGCCCAGGTTGAAAACCCCTACGTTACCAACGCTTAT
GCTTCCACACGCGCACCGCCCACCTCCAACTATGCCGATGTCGGCGATGG
CATGGGAGGGGGAATGCCGATGTACGCGTCTAAAAGCAACGTGAACTTTC
AGTCCAAGATGAAGGATCAGGTTCGTCAGACCATGGCGAGCATAAAGGGT
GATGACTGGAAGATCTACTGCATGAAGGCCACCAATCGTGAGAACGCGGC
TCCTAAAGGGAAGCACGTTCGCGTTATCATGGAAGCGCTTCGTTATGGTG
GTAGCATCTCGAATCGAGAAAGTCCCGCCGGCGGCATTTTCTATCATCTT
CGCAAGCGAATGATGCAGAACGAGTGGGTAGTCGTTGTGAAGGCGTTAAC
TATCTTTCACCACATTTTCCGTGACGGCAACGAGAAATTTGTCGCTCACA
TAGCCAACCACTATCGTGCCATGTTCAAGATGGAGTTCTTCGGCGATAGC
ACCTCAGATGGCTTAGCTTTCAGTGGATTCATCCGATCCTACGGTGCTTA
CTTAGAACAGTGGCTCACTATGAAGGCCGCCATTAATTTTCCTCCCAAGA
ACTCAAGAGAAGATGATCAGGCGCTTACTAACCGCTATGGACAAGCGCCC
ATTGAAGAACTGCTCGCCGCCCTTCCGATTCTCATGGATACGTTTGAAGC
GCTCACGTCAGTCCGATTGGACGGCCAGGCTCGTTATTCCCCTGTAACAA
TGCCAGCCCGATCGATGGTCTTGCGCGACTTGTCACTTGTCGTTACAACT
ATGCAATGCGGCGTTATCCGCCTTCTTGACTTGTTCTTCAACCTCGAGAT
TCCGAATGCCATCATTGCCTTAGATGTGTACAAACGTTTTGTCACTTTAA
TTACAAATGCGAAACCGTTCTTTGATCTCGCTCAATCACTGTCCTCAAAA
TGGCGAGCTCCCGAATTGAGCTCGATATCATTTGAACTGACTGAATCTAT
GCAGGAGTATATTGACAAAGGTCCGCAGAAAGATGAAGTTAAGGAGCCTC
AGTTTTCGGATGACGAAGAGTATGAACCTGAACCGGAACCGGAACCCGTT
CCAGAAGATTACTATGAGCCTGAGCCAGAGTATTATTCAGAAGAAGAACC
AGAAATAATACCGCCGCCACCCCGTCTCCCGACTCCTCCGTCGTCTACGT
CGTCAGAGTCCTCTTCCGAAGAAGAGGAGTCATCATCAGAAGAAGAAGAC
GACATTGACATTCTTCCTTCCGCTCCCGAACCACCACCGCCTCCAAAACC
ATTTGACCCGTTACGAGACCTACTTGGTATTGAGTCCGGCGTTGGTCCTG
CAACTGCTCAACCCGGTCAAACACAAGTTCCTCAACAAAATATGGCTCTT
CAAGTATATGGGGCCGGTGGTCCGATGCCAGGCATGTTCCAACCAGCTGC
GTTAGAGAACACAGTTGACGACCGTGTTGCTAATGTGAAAGGTATTATGG
CCAATTCTGGATGGCAGCACCAACAAAGAAGCGGATTCGGAGTGGATGGC
TCCAACATGCAGTTAGCACTGTATGGAGCCCAAACAACCCCGCAGCAGCA
AGCCCAGCAGCAAGCCCAGCAGCAAGCCCAACAGCAGATGTACAATACAA
TGTCTCTGCAACAGCAACAACAAATGGCGGCGTATCAGACAATGGCTGCG
TATCAGACAATGGCTGCGCAAAACCAGCAACTGGCAATGTATCAGATGCA
GCATGCCGGTATGCACGGAATGAACGGCATGCAACCGATGGGCATGGCAG
GTGCATATACCCCCGTCCCTCGAGGAAATCAATCAGTGCCAGTCATGCAA
TCTGAACAAGTGAAGTCGCAGCCTGGAAATTACCGTGTCCAGAAAGGCAC
AAAACCTTCAAGAGTGAATGAAGACGATCTTGCTTTCGGCCCCCTAATTG
ATCAGATGAAGAAGACGGGGATTAGCAAATAG

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:23507..25738-

>Gcaud1987.t1 ID=Gcaud1987.t1|Name=Gcaud1987.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2232bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:23507..25738- (Gracilaria caudata M_176_S67 male)
ATGTCGTACGATGACTATCGAACCGGACGCCCGCCCGTACCGTCTACTCG
TCCCCCCATCCCAAGGGGCTCGTACGATTCTCTTGCCGGGCGCATGAGCG
AGCAGCCTGCTCGCGGCTCACTCCAGCGCTCCCAGTCCGCCCGAGACTCC
TCCAACACCTCCGCCGGTCGTGGCGCCTCCTCTGCATCCACTTCTGCCGC
CATTACCACCGCCCAGGCCGCCATGGCTTCCATGCGTGGTAATGTCAACG
CCATGACGAATAACGCCCAGGTTGAAAACCCCTACGTTACCAACGCTTAT
GCTTCCACACGCGCACCGCCCACCTCCAACTATGCCGATGTCGGCGATGG
CATGGGAGGGGGAATGCCGATGTACGCGTCTAAAAGCAACGTGAACTTTC
AGTCCAAGATGAAGGATCAGGTTCGTCAGACCATGGCGAGCATAAAGGGT
GATGACTGGAAGATCTACTGCATGAAGGCCACCAATCGTGAGAACGCGGC
TCCTAAAGGGAAGCACGTTCGCGTTATCATGGAAGCGCTTCGTTATGGTG
GTAGCATCTCGAATCGAGAAAGTCCCGCCGGCGGCATTTTCTATCATCTT
CGCAAGCGAATGATGCAGAACGAGTGGGTAGTCGTTGTGAAGGCGTTAAC
TATCTTTCACCACATTTTCCGTGACGGCAACGAGAAATTTGTCGCTCACA
TAGCCAACCACTATCGTGCCATGTTCAAGATGGAGTTCTTCGGCGATAGC
ACCTCAGATGGCTTAGCTTTCAGTGGATTCATCCGATCCTACGGTGCTTA
CTTAGAACAGTGGCTCACTATGAAGGCCGCCATTAATTTTCCTCCCAAGA
ACTCAAGAGAAGATGATCAGGCGCTTACTAACCGCTATGGACAAGCGCCC
ATTGAAGAACTGCTCGCCGCCCTTCCGATTCTCATGGATACGTTTGAAGC
GCTCACGTCAGTCCGATTGGACGGCCAGGCTCGTTATTCCCCTGTAACAA
TGCCAGCCCGATCGATGGTCTTGCGCGACTTGTCACTTGTCGTTACAACT
ATGCAATGCGGCGTTATCCGCCTTCTTGACTTGTTCTTCAACCTCGAGAT
TCCGAATGCCATCATTGCCTTAGATGTGTACAAACGTTTTGTCACTTTAA
TTACAAATGCGAAACCGTTCTTTGATCTCGCTCAATCACTGTCCTCAAAA
TGGCGAGCTCCCGAATTGAGCTCGATATCATTTGAACTGACTGAATCTAT
GCAGGAGTATATTGACAAAGGTCCGCAGAAAGATGAAGTTAAGGAGCCTC
AGTTTTCGGATGACGAAGAGTATGAACCTGAACCGGAACCGGAACCCGTT
CCAGAAGATTACTATGAGCCTGAGCCAGAGTATTATTCAGAAGAAGAACC
AGAAATAATACCGCCGCCACCCCGTCTCCCGACTCCTCCGTCGTCTACGT
CGTCAGAGTCCTCTTCCGAAGAAGAGGAGTCATCATCAGAAGAAGAAGAC
GACATTGACATTCTTCCTTCCGCTCCCGAACCACCACCGCCTCCAAAACC
ATTTGACCCGTTACGAGACCTACTTGGTATTGAGTCCGGCGTTGGTCCTG
CAACTGCTCAACCCGGTCAAACACAAGTTCCTCAACAAAATATGGCTCTT
CAAGTATATGGGGCCGGTGGTCCGATGCCAGGCATGTTCCAACCAGCTGC
GTTAGAGAACACAGTTGACGACCGTGTTGCTAATGTGAAAGGTATTATGG
CCAATTCTGGATGGCAGCACCAACAAAGAAGCGGATTCGGAGTGGATGGC
TCCAACATGCAGTTAGCACTGTATGGAGCCCAAACAACCCCGCAGCAGCA
AGCCCAGCAGCAAGCCCAGCAGCAAGCCCAACAGCAGATGTACAATACAA
TGTCTCTGCAACAGCAACAACAAATGGCGGCGTATCAGACAATGGCTGCG
TATCAGACAATGGCTGCGCAAAACCAGCAACTGGCAATGTATCAGATGCA
GCATGCCGGTATGCACGGAATGAACGGCATGCAACCGATGGGCATGGCAG
GTGCATATACCCCCGTCCCTCGAGGAAATCAATCAGTGCCAGTCATGCAA
TCTGAACAAGTGAAGTCGCAGCCTGGAAATTACCGTGTCCAGAAAGGCAC
AAAACCTTCAAGAGTGAATGAAGACGATCTTGCTTTCGGCCCCCTAATTG
ATCAGATGAAGAAGACGGGGATTAGCAAATAG