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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1985.t1.start1 | Gcaud1985.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_5_length_105932_cov_4.447794 19356..19358 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1985.t1.intron1 | Gcaud1985.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_5_length_105932_cov_4.447794 19464..19554 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1985.t1.stop1 | Gcaud1985.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_5_length_105932_cov_4.447794 21892..21894 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1985.t1 ID=Gcaud1985.t1|Name=Gcaud1985.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=816bp MSLQDLALEKDTYRLAKFLKRQRRLLDAVTSVIELAADGHQILDSVEVCQ KCNLDDLQNDITVETDQLFQSVVRKPSNKLRTFVDKTENADLRSVVRKSS NGLLASADKSKNADLLKFARSFVRRIVAQPIQMFLNAGNTILGAYLKQDD HSEQKQRFRVSILRILMYLSDCFRYRFDHKTAQEVAELMLFSDSKDAEAY MRMAMNAAVTTICTQDLTPFFYYCMFLDNRNVEVNHAEARVVHRYVKIVK ETSHSKVSGSDSVRSEAMVKFIDATWALLMADLKHASLKVRNEELWKTLK DFVNEATGTEVLHMIGAFMFSHYRSTAERKDSGMDWQWELADYALSRFVT VLAEAVAEKLNEVKNIIRNRKRNRRRSKQKKRKKDATNVHGDGGEVAAFA VLKHIGSLEKQVPHLGALSFMAHYWASRELTIGQHNVHNMAKALQSLKTV VCELRLINELTSTLNLSNYLEPKQFKSSRLLPPLPEDVTFCNFALCERLG MFKNVRIFGATFESLFKSGPPNLQEVIRNKTIATYESFVQATATRHMKAF SLRCAQDAKVGVDDLGFAATLSVVTTAIRKQRISILISKLSKIGGGKIAR LQLQVPKVGEAQRSDFEVEASISPPLPGQKPPQECKHLQDEQETTTIDAL ITKRQRLIGSYTPGHSKGQHATHDDVENDPAAPGSPSLSGGLCDASQKTR LVEKNIMSAELARKEADGRTNRFSKEPSGILCRIRQPVDSETLTTPREHS TVETKSTTLRLLELMYPAHTNSVPDLCCRTAYDLDWRGSSSELPYTNVTK FPALDTRKIQSRLEP* back to topspliced messenger RNA >Gcaud1985.t1 ID=Gcaud1985.t1|Name=Gcaud1985.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2448bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:19356..21894+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAGTCTCCAAGACCTGGCATTAGAGAAAGATACATACAGACTCGCCAA ATTCCTAAAACGGCAGCGCCGGCTTCTTGATGCCGTCACCTCTGTTATCG AGCTTGCAGCTGATGGTCACCAGATACTTGACTCAGTTGAAGTTTGTCAG AAGTGCAACCTGGATGATCTTCAAAACGATATCACTGTTGAAACTGATCA GCTTTTCCAGTCGGTAGTAAGAAAGCCATCCAATAAGTTGCGAACGTTTG TGGACAAGACTGAGAATGCAGATCTACGATCTGTAGTAAGGAAATCATCC AATGGGTTGCTGGCCTCTGCGGACAAGAGTAAGAATGCAGATCTGCTTAA GTTTGCGAGGAGCTTTGTCCGCAGGATCGTTGCCCAACCAATTCAGATGT TCCTCAATGCGGGAAATACTATTCTCGGCGCTTATCTCAAACAGGATGAT CACTCTGAGCAAAAACAAAGATTTCGTGTTTCAATTCTCCGCATCCTCAT GTATCTCAGTGATTGTTTTCGATATCGCTTTGATCATAAAACGGCTCAGG AGGTAGCAGAGCTCATGCTCTTCTCAGATTCCAAAGATGCGGAAGCTTAT ATGCGTATGGCAATGAATGCAGCCGTTACGACGATTTGTACTCAAGATCT TACCCCATTTTTTTATTACTGTATGTTTCTGGATAATCGAAATGTGGAGG TCAATCATGCCGAAGCAAGGGTTGTTCATCGATATGTGAAGATTGTTAAG GAGACAAGCCATTCGAAAGTCAGCGGTTCTGATTCTGTGCGAAGCGAAGC AATGGTGAAATTTATAGATGCGACGTGGGCATTGCTAATGGCGGATTTGA AGCATGCATCTTTGAAAGTTCGCAATGAAGAGTTGTGGAAAACCTTGAAG GATTTCGTAAATGAAGCTACTGGAACAGAAGTTCTGCACATGATTGGCGC CTTCATGTTCTCTCATTACAGGTCTACCGCTGAAAGAAAGGACAGTGGTA TGGACTGGCAGTGGGAGCTGGCAGACTACGCCCTTTCTCGATTCGTAACT GTTCTAGCAGAAGCCGTTGCAGAAAAGCTAAACGAGGTAAAGAACATTAT TCGAAACAGAAAAAGGAATAGACGGCGTTCGAAGCAAAAGAAACGCAAGA AGGATGCCACCAACGTCCATGGCGACGGAGGGGAAGTCGCTGCCTTTGCA GTATTGAAACATATTGGATCACTTGAAAAACAAGTTCCGCATCTGGGGGC CCTGAGTTTTATGGCGCACTATTGGGCTTCGAGAGAGCTTACCATCGGCC AGCACAATGTCCATAACATGGCAAAGGCTTTACAAAGTTTAAAGACTGTC GTATGCGAGTTGCGGCTCATTAACGAGTTAACATCCACATTGAATCTGAG CAATTATTTGGAACCTAAGCAGTTCAAAAGCTCAAGACTCCTGCCTCCGT TGCCCGAAGATGTCACTTTTTGCAACTTTGCGCTCTGTGAAAGGCTTGGA ATGTTCAAAAATGTACGCATATTTGGAGCCACATTCGAAAGTCTCTTCAA GAGCGGACCTCCGAATCTTCAAGAGGTTATCCGCAATAAGACCATAGCAA CCTATGAGTCTTTTGTGCAGGCCACTGCCACAAGACATATGAAGGCATTT TCGCTTCGATGTGCGCAAGACGCAAAAGTTGGAGTGGACGATCTCGGTTT TGCTGCCACTCTATCAGTCGTAACGACAGCAATTCGAAAACAGCGAATCT CCATTTTGATATCTAAGTTATCCAAGATCGGAGGTGGCAAGATTGCCCGC CTGCAGTTACAAGTACCAAAGGTTGGCGAAGCTCAGCGATCAGACTTCGA AGTCGAGGCTTCAATTTCCCCACCTCTTCCTGGTCAGAAGCCCCCCCAGG AGTGCAAACACCTTCAAGATGAACAAGAAACCACCACGATTGATGCACTA ATAACAAAGCGGCAAAGACTAATCGGCTCCTACACCCCAGGGCATTCCAA AGGTCAACATGCAACACACGATGACGTCGAGAATGATCCCGCTGCACCGG GTTCGCCTAGCTTATCGGGCGGACTTTGTGACGCATCTCAAAAGACAAGG CTTGTGGAAAAGAACATCATGTCAGCAGAGCTAGCGAGAAAAGAAGCAGA TGGTCGCACAAACAGGTTCTCTAAAGAACCATCCGGCATACTCTGCCGAA TTCGGCAACCAGTAGATTCTGAAACGCTTACGACCCCAAGGGAGCATTCA ACCGTAGAAACCAAAAGCACCACGCTTCGCTTGCTTGAGCTGATGTATCC AGCCCACACGAATTCAGTTCCCGACCTCTGCTGCAGAACGGCATACGACC TAGATTGGAGAGGTTCATCTTCTGAACTCCCCTATACCAACGTTACTAAG TTCCCTGCTCTTGATACTCGTAAGATTCAAAGCCGCCTTGAACCCTAA back to topprotein sequence of Gcaud1985.t1 >Gcaud1985.t1 ID=Gcaud1985.t1|Name=Gcaud1985.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=816bp
MSLQDLALEKDTYRLAKFLKRQRRLLDAVTSVIELAADGHQILDSVEVCQ KCNLDDLQNDITVETDQLFQSVVRKPSNKLRTFVDKTENADLRSVVRKSS NGLLASADKSKNADLLKFARSFVRRIVAQPIQMFLNAGNTILGAYLKQDD HSEQKQRFRVSILRILMYLSDCFRYRFDHKTAQEVAELMLFSDSKDAEAY MRMAMNAAVTTICTQDLTPFFYYCMFLDNRNVEVNHAEARVVHRYVKIVK ETSHSKVSGSDSVRSEAMVKFIDATWALLMADLKHASLKVRNEELWKTLK DFVNEATGTEVLHMIGAFMFSHYRSTAERKDSGMDWQWELADYALSRFVT VLAEAVAEKLNEVKNIIRNRKRNRRRSKQKKRKKDATNVHGDGGEVAAFA VLKHIGSLEKQVPHLGALSFMAHYWASRELTIGQHNVHNMAKALQSLKTV VCELRLINELTSTLNLSNYLEPKQFKSSRLLPPLPEDVTFCNFALCERLG MFKNVRIFGATFESLFKSGPPNLQEVIRNKTIATYESFVQATATRHMKAF SLRCAQDAKVGVDDLGFAATLSVVTTAIRKQRISILISKLSKIGGGKIAR LQLQVPKVGEAQRSDFEVEASISPPLPGQKPPQECKHLQDEQETTTIDAL ITKRQRLIGSYTPGHSKGQHATHDDVENDPAAPGSPSLSGGLCDASQKTR LVEKNIMSAELARKEADGRTNRFSKEPSGILCRIRQPVDSETLTTPREHS TVETKSTTLRLLELMYPAHTNSVPDLCCRTAYDLDWRGSSSELPYTNVTK FPALDTRKIQSRLEP* back to topmRNA from alignment at NODE_5_length_105932_cov_4.447794:19356..21894+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1985.t1 ID=Gcaud1985.t1|Name=Gcaud1985.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2539bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:19356..21894+ (Gracilaria caudata M_176_S67 male) ATGAGTCTCCAAGACCTGGCATTAGAGAAAGATACATACAGACTCGCCAA
ATTCCTAAAACGGCAGCGCCGGCTTCTTGATGCCGTCACCTCTGTTATCG
AGCTTGCAGTACGTCCAGTTTAGCTTTCTTCTATTCGCTTGGGCAGTGCC
TTTGCTATTGTGTTTCTCACCATTCGTATCGCACGCCACGTTTTTGTAGG
CTGATGGTCACCAGATACTTGACTCAGTTGAAGTTTGTCAGAAGTGCAAC
CTGGATGATCTTCAAAACGATATCACTGTTGAAACTGATCAGCTTTTCCA
GTCGGTAGTAAGAAAGCCATCCAATAAGTTGCGAACGTTTGTGGACAAGA
CTGAGAATGCAGATCTACGATCTGTAGTAAGGAAATCATCCAATGGGTTG
CTGGCCTCTGCGGACAAGAGTAAGAATGCAGATCTGCTTAAGTTTGCGAG
GAGCTTTGTCCGCAGGATCGTTGCCCAACCAATTCAGATGTTCCTCAATG
CGGGAAATACTATTCTCGGCGCTTATCTCAAACAGGATGATCACTCTGAG
CAAAAACAAAGATTTCGTGTTTCAATTCTCCGCATCCTCATGTATCTCAG
TGATTGTTTTCGATATCGCTTTGATCATAAAACGGCTCAGGAGGTAGCAG
AGCTCATGCTCTTCTCAGATTCCAAAGATGCGGAAGCTTATATGCGTATG
GCAATGAATGCAGCCGTTACGACGATTTGTACTCAAGATCTTACCCCATT
TTTTTATTACTGTATGTTTCTGGATAATCGAAATGTGGAGGTCAATCATG
CCGAAGCAAGGGTTGTTCATCGATATGTGAAGATTGTTAAGGAGACAAGC
CATTCGAAAGTCAGCGGTTCTGATTCTGTGCGAAGCGAAGCAATGGTGAA
ATTTATAGATGCGACGTGGGCATTGCTAATGGCGGATTTGAAGCATGCAT
CTTTGAAAGTTCGCAATGAAGAGTTGTGGAAAACCTTGAAGGATTTCGTA
AATGAAGCTACTGGAACAGAAGTTCTGCACATGATTGGCGCCTTCATGTT
CTCTCATTACAGGTCTACCGCTGAAAGAAAGGACAGTGGTATGGACTGGC
AGTGGGAGCTGGCAGACTACGCCCTTTCTCGATTCGTAACTGTTCTAGCA
GAAGCCGTTGCAGAAAAGCTAAACGAGGTAAAGAACATTATTCGAAACAG
AAAAAGGAATAGACGGCGTTCGAAGCAAAAGAAACGCAAGAAGGATGCCA
CCAACGTCCATGGCGACGGAGGGGAAGTCGCTGCCTTTGCAGTATTGAAA
CATATTGGATCACTTGAAAAACAAGTTCCGCATCTGGGGGCCCTGAGTTT
TATGGCGCACTATTGGGCTTCGAGAGAGCTTACCATCGGCCAGCACAATG
TCCATAACATGGCAAAGGCTTTACAAAGTTTAAAGACTGTCGTATGCGAG
TTGCGGCTCATTAACGAGTTAACATCCACATTGAATCTGAGCAATTATTT
GGAACCTAAGCAGTTCAAAAGCTCAAGACTCCTGCCTCCGTTGCCCGAAG
ATGTCACTTTTTGCAACTTTGCGCTCTGTGAAAGGCTTGGAATGTTCAAA
AATGTACGCATATTTGGAGCCACATTCGAAAGTCTCTTCAAGAGCGGACC
TCCGAATCTTCAAGAGGTTATCCGCAATAAGACCATAGCAACCTATGAGT
CTTTTGTGCAGGCCACTGCCACAAGACATATGAAGGCATTTTCGCTTCGA
TGTGCGCAAGACGCAAAAGTTGGAGTGGACGATCTCGGTTTTGCTGCCAC
TCTATCAGTCGTAACGACAGCAATTCGAAAACAGCGAATCTCCATTTTGA
TATCTAAGTTATCCAAGATCGGAGGTGGCAAGATTGCCCGCCTGCAGTTA
CAAGTACCAAAGGTTGGCGAAGCTCAGCGATCAGACTTCGAAGTCGAGGC
TTCAATTTCCCCACCTCTTCCTGGTCAGAAGCCCCCCCAGGAGTGCAAAC
ACCTTCAAGATGAACAAGAAACCACCACGATTGATGCACTAATAACAAAG
CGGCAAAGACTAATCGGCTCCTACACCCCAGGGCATTCCAAAGGTCAACA
TGCAACACACGATGACGTCGAGAATGATCCCGCTGCACCGGGTTCGCCTA
GCTTATCGGGCGGACTTTGTGACGCATCTCAAAAGACAAGGCTTGTGGAA
AAGAACATCATGTCAGCAGAGCTAGCGAGAAAAGAAGCAGATGGTCGCAC
AAACAGGTTCTCTAAAGAACCATCCGGCATACTCTGCCGAATTCGGCAAC
CAGTAGATTCTGAAACGCTTACGACCCCAAGGGAGCATTCAACCGTAGAA
ACCAAAAGCACCACGCTTCGCTTGCTTGAGCTGATGTATCCAGCCCACAC
GAATTCAGTTCCCGACCTCTGCTGCAGAACGGCATACGACCTAGATTGGA
GAGGTTCATCTTCTGAACTCCCCTATACCAACGTTACTAAGTTCCCTGCT
CTTGATACTCGTAAGATTCAAAGCCGCCTTGAACCCTAA back to topCoding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:19356..21894+ >Gcaud1985.t1 ID=Gcaud1985.t1|Name=Gcaud1985.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2448bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:19356..21894+ (Gracilaria caudata M_176_S67 male) ATGAGTCTCCAAGACCTGGCATTAGAGAAAGATACATACAGACTCGCCAA ATTCCTAAAACGGCAGCGCCGGCTTCTTGATGCCGTCACCTCTGTTATCG AGCTTGCAGCTGATGGTCACCAGATACTTGACTCAGTTGAAGTTTGTCAG AAGTGCAACCTGGATGATCTTCAAAACGATATCACTGTTGAAACTGATCA GCTTTTCCAGTCGGTAGTAAGAAAGCCATCCAATAAGTTGCGAACGTTTG TGGACAAGACTGAGAATGCAGATCTACGATCTGTAGTAAGGAAATCATCC AATGGGTTGCTGGCCTCTGCGGACAAGAGTAAGAATGCAGATCTGCTTAA GTTTGCGAGGAGCTTTGTCCGCAGGATCGTTGCCCAACCAATTCAGATGT TCCTCAATGCGGGAAATACTATTCTCGGCGCTTATCTCAAACAGGATGAT CACTCTGAGCAAAAACAAAGATTTCGTGTTTCAATTCTCCGCATCCTCAT GTATCTCAGTGATTGTTTTCGATATCGCTTTGATCATAAAACGGCTCAGG AGGTAGCAGAGCTCATGCTCTTCTCAGATTCCAAAGATGCGGAAGCTTAT ATGCGTATGGCAATGAATGCAGCCGTTACGACGATTTGTACTCAAGATCT TACCCCATTTTTTTATTACTGTATGTTTCTGGATAATCGAAATGTGGAGG TCAATCATGCCGAAGCAAGGGTTGTTCATCGATATGTGAAGATTGTTAAG GAGACAAGCCATTCGAAAGTCAGCGGTTCTGATTCTGTGCGAAGCGAAGC AATGGTGAAATTTATAGATGCGACGTGGGCATTGCTAATGGCGGATTTGA AGCATGCATCTTTGAAAGTTCGCAATGAAGAGTTGTGGAAAACCTTGAAG GATTTCGTAAATGAAGCTACTGGAACAGAAGTTCTGCACATGATTGGCGC CTTCATGTTCTCTCATTACAGGTCTACCGCTGAAAGAAAGGACAGTGGTA TGGACTGGCAGTGGGAGCTGGCAGACTACGCCCTTTCTCGATTCGTAACT GTTCTAGCAGAAGCCGTTGCAGAAAAGCTAAACGAGGTAAAGAACATTAT TCGAAACAGAAAAAGGAATAGACGGCGTTCGAAGCAAAAGAAACGCAAGA AGGATGCCACCAACGTCCATGGCGACGGAGGGGAAGTCGCTGCCTTTGCA GTATTGAAACATATTGGATCACTTGAAAAACAAGTTCCGCATCTGGGGGC CCTGAGTTTTATGGCGCACTATTGGGCTTCGAGAGAGCTTACCATCGGCC AGCACAATGTCCATAACATGGCAAAGGCTTTACAAAGTTTAAAGACTGTC GTATGCGAGTTGCGGCTCATTAACGAGTTAACATCCACATTGAATCTGAG CAATTATTTGGAACCTAAGCAGTTCAAAAGCTCAAGACTCCTGCCTCCGT TGCCCGAAGATGTCACTTTTTGCAACTTTGCGCTCTGTGAAAGGCTTGGA ATGTTCAAAAATGTACGCATATTTGGAGCCACATTCGAAAGTCTCTTCAA GAGCGGACCTCCGAATCTTCAAGAGGTTATCCGCAATAAGACCATAGCAA CCTATGAGTCTTTTGTGCAGGCCACTGCCACAAGACATATGAAGGCATTT TCGCTTCGATGTGCGCAAGACGCAAAAGTTGGAGTGGACGATCTCGGTTT TGCTGCCACTCTATCAGTCGTAACGACAGCAATTCGAAAACAGCGAATCT CCATTTTGATATCTAAGTTATCCAAGATCGGAGGTGGCAAGATTGCCCGC CTGCAGTTACAAGTACCAAAGGTTGGCGAAGCTCAGCGATCAGACTTCGA AGTCGAGGCTTCAATTTCCCCACCTCTTCCTGGTCAGAAGCCCCCCCAGG AGTGCAAACACCTTCAAGATGAACAAGAAACCACCACGATTGATGCACTA ATAACAAAGCGGCAAAGACTAATCGGCTCCTACACCCCAGGGCATTCCAA AGGTCAACATGCAACACACGATGACGTCGAGAATGATCCCGCTGCACCGG GTTCGCCTAGCTTATCGGGCGGACTTTGTGACGCATCTCAAAAGACAAGG CTTGTGGAAAAGAACATCATGTCAGCAGAGCTAGCGAGAAAAGAAGCAGA TGGTCGCACAAACAGGTTCTCTAAAGAACCATCCGGCATACTCTGCCGAA TTCGGCAACCAGTAGATTCTGAAACGCTTACGACCCCAAGGGAGCATTCA ACCGTAGAAACCAAAAGCACCACGCTTCGCTTGCTTGAGCTGATGTATCC AGCCCACACGAATTCAGTTCCCGACCTCTGCTGCAGAACGGCATACGACC TAGATTGGAGAGGTTCATCTTCTGAACTCCCCTATACCAACGTTACTAAG TTCCCTGCTCTTGATACTCGTAAGATTCAAAGCCGCCTTGAACCCTAA back to top
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