Gcaud1981.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1981.t1
Unique Name	Gcaud1981.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	417

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:9340..10590 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707625.1
PFAMs	Aminotran_1_2
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00021,RC01124
KEGG ko	ko:K01762,ko:K20772
KEGG Reaction	R00179
KEGG Pathway	ko00270,ko01100,ko01110,ko04016,map00270,map01100,map01110,map04016
KEGG Module	M00368
Evalue	1.69e-60
EggNOG OGs	COG0436@1\|root,KOG0256@2759\|Eukaryota
EC	4.4.1.14
Description	1-aminocyclopropane-1-carboxylate synthase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1981	Gcaud1981	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 9340..10590 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1981.t1.stop1	Gcaud1981.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 9340..9342 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1981.t1.CDS1	Gcaud1981.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 9340..10590 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1981.t1.exon1	Gcaud1981.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 9340..10590 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1981.t1.start1	Gcaud1981.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 10588..10590 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1981.t1	Gcaud1981.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 9340..10590 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:9340..10590-
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:9340..10590-

mRNA sequence

>Gcaud1981.t1 ID=Gcaud1981.t1|Name=Gcaud1981.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=417bp
MAEMQLKMELSSRVPDVDAPLPPHVAAFFIPPYHPELRPDGPINLSIAEN
KLSLPLVCDALNELPPIPVSALSPSSKTRHPISELADQLVDLFSKRIGHY
PVDRKGFSIHSGATCAIDVLTFSLCDPAEAVILTGPGYSALTRDVVTLSN
AHPIIAHSPDHEPILRVETLDAALKSSTRRVRFAIVLSPDNPTGLIWSPK
LISELARWAQQNHLHIVFDEAYALSVYDLTTGFTSAIDVFKGKLPPHVHI
VWSTSKDFCTSGLRFGVLYTQNEELQKCASILSSASPVSFVTQWSFAQIL
SRKQWLNGYLQESASRLRHASQRVASFLKVTRIPFCKPQAGFFFWIDLRK
WLKDSTLESEIDLWQSLTNGGVILTPGSGCFANTYGFFRLCFAAADHDTM
TVALQRLRVTLQAQPS*

spliced messenger RNA

>Gcaud1981.t1 ID=Gcaud1981.t1|Name=Gcaud1981.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1251bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:9340..10590- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAAATGCAGCTGAAAATGGAGCTCTCATCGCGGGTGCCAGATGT
TGATGCCCCCTTGCCACCACATGTCGCAGCCTTCTTCATCCCTCCTTATC
ATCCGGAACTCCGTCCCGACGGTCCAATAAATCTCTCAATTGCCGAGAAC
AAGCTTTCGCTTCCGCTCGTCTGTGATGCCCTCAATGAGCTCCCACCTAT
CCCCGTATCCGCCCTCTCTCCATCATCGAAAACTCGCCACCCTATCTCGG
AACTCGCGGATCAACTTGTGGACCTCTTTTCGAAGCGAATTGGTCACTAT
CCCGTCGATCGCAAAGGCTTTTCTATTCATTCCGGTGCTACTTGCGCCAT
AGACGTGCTTACTTTCTCTTTATGCGACCCAGCTGAAGCTGTTATACTAA
CAGGACCTGGGTATTCTGCCCTTACGCGTGACGTGGTCACTTTGTCGAAT
GCTCATCCAATTATCGCACATTCCCCAGATCATGAGCCTATTCTGAGAGT
CGAAACGCTGGATGCTGCTCTGAAGTCCAGCACAAGACGCGTTCGCTTCG
CTATAGTTCTTTCACCAGACAACCCCACCGGTCTAATTTGGTCACCCAAA
CTCATTTCGGAGCTGGCAAGATGGGCACAACAGAATCATCTACACATTGT
TTTTGATGAGGCTTACGCACTCAGTGTATATGACCTAACAACCGGATTCA
CCAGCGCTATTGACGTGTTCAAAGGAAAACTCCCACCCCACGTTCATATT
GTATGGTCAACGTCAAAGGACTTTTGTACATCTGGCTTACGCTTCGGAGT
GCTGTACACGCAAAATGAGGAACTGCAGAAGTGTGCCTCTATTCTTTCAT
CTGCCTCACCAGTCTCATTCGTCACTCAATGGAGTTTTGCGCAAATACTT
TCAAGAAAGCAGTGGCTCAATGGTTACCTGCAAGAAAGCGCCAGCCGCTT
GAGACATGCTTCGCAAAGAGTGGCCAGCTTCCTCAAAGTTACACGAATAC
CGTTTTGTAAACCACAGGCAGGTTTCTTTTTCTGGATTGATTTAAGAAAG
TGGCTGAAAGATTCGACCCTTGAAAGTGAGATCGATCTCTGGCAATCCCT
CACAAACGGAGGTGTCATCCTTACTCCTGGAAGTGGATGCTTTGCAAATA
CGTATGGCTTTTTTCGTCTTTGTTTCGCGGCGGCGGATCATGACACGATG
ACTGTTGCTCTTCAACGTCTCCGGGTGACGCTCCAGGCCCAGCCTAGTTG
A

protein sequence of Gcaud1981.t1

>Gcaud1981.t1 ID=Gcaud1981.t1|Name=Gcaud1981.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=417bp
MAEMQLKMELSSRVPDVDAPLPPHVAAFFIPPYHPELRPDGPINLSIAEN
KLSLPLVCDALNELPPIPVSALSPSSKTRHPISELADQLVDLFSKRIGHY
PVDRKGFSIHSGATCAIDVLTFSLCDPAEAVILTGPGYSALTRDVVTLSN
AHPIIAHSPDHEPILRVETLDAALKSSTRRVRFAIVLSPDNPTGLIWSPK
LISELARWAQQNHLHIVFDEAYALSVYDLTTGFTSAIDVFKGKLPPHVHI
VWSTSKDFCTSGLRFGVLYTQNEELQKCASILSSASPVSFVTQWSFAQIL
SRKQWLNGYLQESASRLRHASQRVASFLKVTRIPFCKPQAGFFFWIDLRK
WLKDSTLESEIDLWQSLTNGGVILTPGSGCFANTYGFFRLCFAAADHDTM
TVALQRLRVTLQAQPS*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:9340..10590-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1981.t1 ID=Gcaud1981.t1|Name=Gcaud1981.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1251bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:9340..10590- (Gracilaria caudata M_176_S67 male)
ATGGCGGAAATGCAGCTGAAAATGGAGCTCTCATCGCGGGTGCCAGATGT
TGATGCCCCCTTGCCACCACATGTCGCAGCCTTCTTCATCCCTCCTTATC
ATCCGGAACTCCGTCCCGACGGTCCAATAAATCTCTCAATTGCCGAGAAC
AAGCTTTCGCTTCCGCTCGTCTGTGATGCCCTCAATGAGCTCCCACCTAT
CCCCGTATCCGCCCTCTCTCCATCATCGAAAACTCGCCACCCTATCTCGG
AACTCGCGGATCAACTTGTGGACCTCTTTTCGAAGCGAATTGGTCACTAT
CCCGTCGATCGCAAAGGCTTTTCTATTCATTCCGGTGCTACTTGCGCCAT
AGACGTGCTTACTTTCTCTTTATGCGACCCAGCTGAAGCTGTTATACTAA
CAGGACCTGGGTATTCTGCCCTTACGCGTGACGTGGTCACTTTGTCGAAT
GCTCATCCAATTATCGCACATTCCCCAGATCATGAGCCTATTCTGAGAGT
CGAAACGCTGGATGCTGCTCTGAAGTCCAGCACAAGACGCGTTCGCTTCG
CTATAGTTCTTTCACCAGACAACCCCACCGGTCTAATTTGGTCACCCAAA
CTCATTTCGGAGCTGGCAAGATGGGCACAACAGAATCATCTACACATTGT
TTTTGATGAGGCTTACGCACTCAGTGTATATGACCTAACAACCGGATTCA
CCAGCGCTATTGACGTGTTCAAAGGAAAACTCCCACCCCACGTTCATATT
GTATGGTCAACGTCAAAGGACTTTTGTACATCTGGCTTACGCTTCGGAGT
GCTGTACACGCAAAATGAGGAACTGCAGAAGTGTGCCTCTATTCTTTCAT
CTGCCTCACCAGTCTCATTCGTCACTCAATGGAGTTTTGCGCAAATACTT
TCAAGAAAGCAGTGGCTCAATGGTTACCTGCAAGAAAGCGCCAGCCGCTT
GAGACATGCTTCGCAAAGAGTGGCCAGCTTCCTCAAAGTTACACGAATAC
CGTTTTGTAAACCACAGGCAGGTTTCTTTTTCTGGATTGATTTAAGAAAG
TGGCTGAAAGATTCGACCCTTGAAAGTGAGATCGATCTCTGGCAATCCCT
CACAAACGGAGGTGTCATCCTTACTCCTGGAAGTGGATGCTTTGCAAATA
CGTATGGCTTTTTTCGTCTTTGTTTCGCGGCGGCGGATCATGACACGATG
ACTGTTGCTCTTCAACGTCTCCGGGTGACGCTCCAGGCCCAGCCTAGTTG
A

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:9340..10590-

>Gcaud1981.t1 ID=Gcaud1981.t1|Name=Gcaud1981.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1251bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:9340..10590- (Gracilaria caudata M_176_S67 male)
ATGGCGGAAATGCAGCTGAAAATGGAGCTCTCATCGCGGGTGCCAGATGT
TGATGCCCCCTTGCCACCACATGTCGCAGCCTTCTTCATCCCTCCTTATC
ATCCGGAACTCCGTCCCGACGGTCCAATAAATCTCTCAATTGCCGAGAAC
AAGCTTTCGCTTCCGCTCGTCTGTGATGCCCTCAATGAGCTCCCACCTAT
CCCCGTATCCGCCCTCTCTCCATCATCGAAAACTCGCCACCCTATCTCGG
AACTCGCGGATCAACTTGTGGACCTCTTTTCGAAGCGAATTGGTCACTAT
CCCGTCGATCGCAAAGGCTTTTCTATTCATTCCGGTGCTACTTGCGCCAT
AGACGTGCTTACTTTCTCTTTATGCGACCCAGCTGAAGCTGTTATACTAA
CAGGACCTGGGTATTCTGCCCTTACGCGTGACGTGGTCACTTTGTCGAAT
GCTCATCCAATTATCGCACATTCCCCAGATCATGAGCCTATTCTGAGAGT
CGAAACGCTGGATGCTGCTCTGAAGTCCAGCACAAGACGCGTTCGCTTCG
CTATAGTTCTTTCACCAGACAACCCCACCGGTCTAATTTGGTCACCCAAA
CTCATTTCGGAGCTGGCAAGATGGGCACAACAGAATCATCTACACATTGT
TTTTGATGAGGCTTACGCACTCAGTGTATATGACCTAACAACCGGATTCA
CCAGCGCTATTGACGTGTTCAAAGGAAAACTCCCACCCCACGTTCATATT
GTATGGTCAACGTCAAAGGACTTTTGTACATCTGGCTTACGCTTCGGAGT
GCTGTACACGCAAAATGAGGAACTGCAGAAGTGTGCCTCTATTCTTTCAT
CTGCCTCACCAGTCTCATTCGTCACTCAATGGAGTTTTGCGCAAATACTT
TCAAGAAAGCAGTGGCTCAATGGTTACCTGCAAGAAAGCGCCAGCCGCTT
GAGACATGCTTCGCAAAGAGTGGCCAGCTTCCTCAAAGTTACACGAATAC
CGTTTTGTAAACCACAGGCAGGTTTCTTTTTCTGGATTGATTTAAGAAAG
TGGCTGAAAGATTCGACCCTTGAAAGTGAGATCGATCTCTGGCAATCCCT
CACAAACGGAGGTGTCATCCTTACTCCTGGAAGTGGATGCTTTGCAAATA
CGTATGGCTTTTTTCGTCTTTGTTTCGCGGCGGCGGATCATGACACGATG
ACTGTTGCTCTTCAACGTCTCCGGGTGACGCTCCAGGCCCAGCCTAGTTG
A