Gcaud1976.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1976.t1
Unique NameGcaud1976.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:2199..3338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0T3C4
PFAMsDDE_Tnp_4
Max annot lvl2759|Eukaryota
Evalue4.97e-38
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota
Descriptionnuclease activity
COG categoryB
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1976Gcaud1976Gracilaria caudata M_176_S67 malegeneNODE_5_length_105932_cov_4.447794 2199..3338 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1976.t1.stop1Gcaud1976.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5_length_105932_cov_4.447794 2199..2201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1976.t1.CDS1Gcaud1976.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 2199..3338 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1976.t1.exon1Gcaud1976.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 2199..3338 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1976.t1.start1Gcaud1976.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5_length_105932_cov_4.447794 3336..3338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1976.t1Gcaud1976.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5_length_105932_cov_4.447794 2199..3338 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1976.t1 ID=Gcaud1976.t1|Name=Gcaud1976.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=380bp
MSPAIYRRNSTFESITDFLGPQTFKHDYRMSRASFYKLLRLVERNITRNE
EMGTRSGRPTLSASVRLDITLTILAGGSVDTVHQLFRTQRSTVYSVFKST
CVALSSTLDLPGIPESFKELEELFLGFKISRSKVNPFTGCIGAIDGIAVK
IKPPKRQAAKYWCRKGFYALPVQAVVDARGRFLFISAMCVGSTHDSLAYA
ASRLSEFLRNQNMPREFHLVGDEAYVCNNFLITPIPASQVRYWFEKSFNY
FHSSLRVHVEQAFGRLVARWRILQARLNYSVHTNASIFVLCAKLQNFCIE
EGDELFRHFTISELKDMDKDVQDWYTLCKESLTMMENTSEGGTGSALAQR
STNKRDRMVDLVRQRNIRRPEITGAPVPL*
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spliced messenger RNA

>Gcaud1976.t1 ID=Gcaud1976.t1|Name=Gcaud1976.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:2199..3338- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCCGGCAATATATAGACGTAATTCGACTTTCGAGTCTATCACGGA
CTTTCTTGGTCCTCAAACGTTTAAACACGATTACCGAATGAGTAGAGCTT
CATTCTACAAACTGCTACGTCTAGTGGAAAGAAATATCACGCGCAACGAA
GAAATGGGAACCAGATCAGGTCGTCCAACACTTTCCGCATCTGTTCGATT
GGATATTACGCTTACTATTCTTGCGGGAGGTTCAGTGGATACCGTACACC
AACTATTTAGGACACAGCGTTCTACTGTGTACTCTGTTTTCAAGAGCACA
TGTGTTGCCTTGTCCTCAACGCTGGATCTGCCCGGCATACCTGAATCATT
CAAAGAACTTGAAGAGCTCTTTCTGGGATTCAAGATATCCCGTTCAAAAG
TTAATCCCTTTACGGGATGCATTGGCGCGATCGATGGCATTGCGGTGAAA
ATAAAACCGCCCAAGAGACAGGCCGCAAAGTACTGGTGTCGGAAAGGGTT
TTACGCTCTTCCAGTTCAGGCTGTCGTGGACGCTAGGGGTCGTTTTCTTT
TCATTTCTGCTATGTGCGTTGGATCTACGCATGACTCCTTGGCATACGCT
GCTTCGCGGCTCTCGGAGTTCCTTCGAAATCAAAACATGCCAAGGGAGTT
TCACTTGGTGGGCGACGAAGCTTACGTGTGCAATAATTTTCTCATCACCC
CCATACCAGCCTCACAGGTACGTTATTGGTTTGAAAAGTCGTTTAACTAT
TTCCACTCTTCCCTTCGTGTGCATGTTGAACAGGCGTTTGGAAGATTGGT
GGCAAGATGGAGGATTTTGCAGGCGCGTCTCAACTACTCTGTTCACACAA
ATGCGAGCATATTCGTTCTGTGTGCAAAGCTGCAGAACTTTTGTATTGAG
GAAGGCGATGAGCTTTTTCGCCACTTTACGATATCTGAATTGAAGGACAT
GGACAAAGATGTGCAAGATTGGTACACGTTGTGTAAAGAGAGTCTCACTA
TGATGGAAAACACAAGCGAGGGCGGGACTGGCTCCGCATTGGCTCAACGT
TCCACAAATAAGCGTGATAGAATGGTGGACCTCGTGCGACAACGCAATAT
TAGACGGCCTGAGATCACGGGAGCACCCGTTCCACTTTGA
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protein sequence of Gcaud1976.t1

>Gcaud1976.t1 ID=Gcaud1976.t1|Name=Gcaud1976.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=380bp
MSPAIYRRNSTFESITDFLGPQTFKHDYRMSRASFYKLLRLVERNITRNE
EMGTRSGRPTLSASVRLDITLTILAGGSVDTVHQLFRTQRSTVYSVFKST
CVALSSTLDLPGIPESFKELEELFLGFKISRSKVNPFTGCIGAIDGIAVK
IKPPKRQAAKYWCRKGFYALPVQAVVDARGRFLFISAMCVGSTHDSLAYA
ASRLSEFLRNQNMPREFHLVGDEAYVCNNFLITPIPASQVRYWFEKSFNY
FHSSLRVHVEQAFGRLVARWRILQARLNYSVHTNASIFVLCAKLQNFCIE
EGDELFRHFTISELKDMDKDVQDWYTLCKESLTMMENTSEGGTGSALAQR
STNKRDRMVDLVRQRNIRRPEITGAPVPL*
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mRNA from alignment at NODE_5_length_105932_cov_4.447794:2199..3338-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1976.t1 ID=Gcaud1976.t1|Name=Gcaud1976.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:2199..3338- (Gracilaria caudata M_176_S67 male)
ATGTCCCCGGCAATATATAGACGTAATTCGACTTTCGAGTCTATCACGGA
CTTTCTTGGTCCTCAAACGTTTAAACACGATTACCGAATGAGTAGAGCTT
CATTCTACAAACTGCTACGTCTAGTGGAAAGAAATATCACGCGCAACGAA
GAAATGGGAACCAGATCAGGTCGTCCAACACTTTCCGCATCTGTTCGATT
GGATATTACGCTTACTATTCTTGCGGGAGGTTCAGTGGATACCGTACACC
AACTATTTAGGACACAGCGTTCTACTGTGTACTCTGTTTTCAAGAGCACA
TGTGTTGCCTTGTCCTCAACGCTGGATCTGCCCGGCATACCTGAATCATT
CAAAGAACTTGAAGAGCTCTTTCTGGGATTCAAGATATCCCGTTCAAAAG
TTAATCCCTTTACGGGATGCATTGGCGCGATCGATGGCATTGCGGTGAAA
ATAAAACCGCCCAAGAGACAGGCCGCAAAGTACTGGTGTCGGAAAGGGTT
TTACGCTCTTCCAGTTCAGGCTGTCGTGGACGCTAGGGGTCGTTTTCTTT
TCATTTCTGCTATGTGCGTTGGATCTACGCATGACTCCTTGGCATACGCT
GCTTCGCGGCTCTCGGAGTTCCTTCGAAATCAAAACATGCCAAGGGAGTT
TCACTTGGTGGGCGACGAAGCTTACGTGTGCAATAATTTTCTCATCACCC
CCATACCAGCCTCACAGGTACGTTATTGGTTTGAAAAGTCGTTTAACTAT
TTCCACTCTTCCCTTCGTGTGCATGTTGAACAGGCGTTTGGAAGATTGGT
GGCAAGATGGAGGATTTTGCAGGCGCGTCTCAACTACTCTGTTCACACAA
ATGCGAGCATATTCGTTCTGTGTGCAAAGCTGCAGAACTTTTGTATTGAG
GAAGGCGATGAGCTTTTTCGCCACTTTACGATATCTGAATTGAAGGACAT
GGACAAAGATGTGCAAGATTGGTACACGTTGTGTAAAGAGAGTCTCACTA
TGATGGAAAACACAAGCGAGGGCGGGACTGGCTCCGCATTGGCTCAACGT
TCCACAAATAAGCGTGATAGAATGGTGGACCTCGTGCGACAACGCAATAT
TAGACGGCCTGAGATCACGGGAGCACCCGTTCCACTTTGA
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Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:2199..3338-

>Gcaud1976.t1 ID=Gcaud1976.t1|Name=Gcaud1976.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1140bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:2199..3338- (Gracilaria caudata M_176_S67 male)
ATGTCCCCGGCAATATATAGACGTAATTCGACTTTCGAGTCTATCACGGA
CTTTCTTGGTCCTCAAACGTTTAAACACGATTACCGAATGAGTAGAGCTT
CATTCTACAAACTGCTACGTCTAGTGGAAAGAAATATCACGCGCAACGAA
GAAATGGGAACCAGATCAGGTCGTCCAACACTTTCCGCATCTGTTCGATT
GGATATTACGCTTACTATTCTTGCGGGAGGTTCAGTGGATACCGTACACC
AACTATTTAGGACACAGCGTTCTACTGTGTACTCTGTTTTCAAGAGCACA
TGTGTTGCCTTGTCCTCAACGCTGGATCTGCCCGGCATACCTGAATCATT
CAAAGAACTTGAAGAGCTCTTTCTGGGATTCAAGATATCCCGTTCAAAAG
TTAATCCCTTTACGGGATGCATTGGCGCGATCGATGGCATTGCGGTGAAA
ATAAAACCGCCCAAGAGACAGGCCGCAAAGTACTGGTGTCGGAAAGGGTT
TTACGCTCTTCCAGTTCAGGCTGTCGTGGACGCTAGGGGTCGTTTTCTTT
TCATTTCTGCTATGTGCGTTGGATCTACGCATGACTCCTTGGCATACGCT
GCTTCGCGGCTCTCGGAGTTCCTTCGAAATCAAAACATGCCAAGGGAGTT
TCACTTGGTGGGCGACGAAGCTTACGTGTGCAATAATTTTCTCATCACCC
CCATACCAGCCTCACAGGTACGTTATTGGTTTGAAAAGTCGTTTAACTAT
TTCCACTCTTCCCTTCGTGTGCATGTTGAACAGGCGTTTGGAAGATTGGT
GGCAAGATGGAGGATTTTGCAGGCGCGTCTCAACTACTCTGTTCACACAA
ATGCGAGCATATTCGTTCTGTGTGCAAAGCTGCAGAACTTTTGTATTGAG
GAAGGCGATGAGCTTTTTCGCCACTTTACGATATCTGAATTGAAGGACAT
GGACAAAGATGTGCAAGATTGGTACACGTTGTGTAAAGAGAGTCTCACTA
TGATGGAAAACACAAGCGAGGGCGGGACTGGCTCCGCATTGGCTCAACGT
TCCACAAATAAGCGTGATAGAATGGTGGACCTCGTGCGACAACGCAATAT
TAGACGGCCTGAGATCACGGGAGCACCCGTTCCACTTTGA
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