Gcaud1975.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1975.t1
Unique Name	Gcaud1975.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	530

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_297_length_31759_cov_4.165656	contig	NODE_297_length_31759_cov_4.165656:27745..30761 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_04553T0
Max annot lvl	4751\|Fungi
Evalue	2.16e-15
EggNOG OGs	2E3H1@1\|root,2SAJC@2759\|Eukaryota,3ARBF@33154\|Opisthokonta,3PFVF@4751\|Fungi
Description	Allomyces macrogynus ATCC 38327
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1975	Gcaud1975	Gracilaria caudata M_176_S67 male	gene	NODE_297_length_31759_cov_4.165656 27745..30761 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1975.t1	Gcaud1975.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_297_length_31759_cov_4.165656 27745..30761 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1975.t1.stop1	Gcaud1975.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_297_length_31759_cov_4.165656 27745..27747 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1975.t1.CDS1	Gcaud1975.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_297_length_31759_cov_4.165656 27745..28772 -
Gcaud1975.t1.CDS2	Gcaud1975.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_297_length_31759_cov_4.165656 28872..29054 -
Gcaud1975.t1.CDS3	Gcaud1975.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_297_length_31759_cov_4.165656 30302..30388 -
Gcaud1975.t1.CDS4	Gcaud1975.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_297_length_31759_cov_4.165656 30470..30761 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1975.t1.exon1	Gcaud1975.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_297_length_31759_cov_4.165656 27745..28772 -
Gcaud1975.t1.exon2	Gcaud1975.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_297_length_31759_cov_4.165656 28872..29054 -
Gcaud1975.t1.exon3	Gcaud1975.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_297_length_31759_cov_4.165656 30302..30388 -
Gcaud1975.t1.exon4	Gcaud1975.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_297_length_31759_cov_4.165656 30470..30761 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1975.t1.intron1	Gcaud1975.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_297_length_31759_cov_4.165656 28773..28871 -
Gcaud1975.t1.intron2	Gcaud1975.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_297_length_31759_cov_4.165656 29055..30301 -
Gcaud1975.t1.intron3	Gcaud1975.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_297_length_31759_cov_4.165656 30389..30469 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1975.t1.start1	Gcaud1975.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_297_length_31759_cov_4.165656 30759..30761 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_297_length_31759_cov_4.165656:27745..30761-
coding sequence from alignment at NODE_297_length_31759_cov_4.165656:27745..30761-

mRNA sequence

>Gcaud1975.t1 ID=Gcaud1975.t1|Name=Gcaud1975.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=530bp
MKSEASESNKMAADQVANVLLERMQQSGERDRIKEWLMNDLETTGWTSAL
LEKATQLRSSNERSTSENSSGVDASSSSQADQLTVRRMSSQLCKDALASV
PDSVRSKLMQELLDICRQYVASENLANPLPTRELHCRVGAQQGRDCYGPC
PAPDDYGRLNHPWINEHNPAQTWKRGDMVNVRWHRDNHDGTGFVRLVLVP
VEKMMDKNAHDQYAFHFLCMNEGLHHCSDRSYDTCGNDAEGMAWQKLVQV
PTSYPDGVYVFGWSWYGGGDYRAMSFFGDYYSCSFVKIEGGVPVTDSYEP
QWDGNRCVSATDRLGICWKEPCHVGRMYEMEPFEFKDGKKPLAIQRSWFG
EDHDNDHDDDSNSSGSSASLGSGAFVAVGARSGGRGGRNNAASALDLDIG
QTMSGSSSEDDENAFNTELISTGALGVFFLDFTNWEKLPLKDGETYRLDN
FKNGFTVEAFYNGDVRFIDFFVDGTRVRRERSKPYVMQGNRGKLIFGWNP
PVGRIVKVQVKVTTKSGRTEGFEADIEFE*

spliced messenger RNA

>Gcaud1975.t1 ID=Gcaud1975.t1|Name=Gcaud1975.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:27745..30761- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGCGAGGCGTCTGAAAGCAACAAAATGGCGGCTGATCAAGTTGC
GAACGTGCTTTTAGAACGAATGCAACAGTCTGGCGAGCGCGACCGAATCA
AAGAGTGGTTGATGAATGACTTGGAAACCACCGGTTGGACATCTGCTTTG
CTCGAGAAAGCCACGCAACTGCGTTCTTCAAACGAGAGGTCAACCTCGGA
GAACAGTTCCGGAGTGGATGCCTCTTCATCATCACAGGCAGATCAGCTTA
CTGTGAGACGCATGTCGTCGCAGTTGTGTAAAGATGCTTTAGCTTCTGTG
CCGGACTCTGTGCGTTCGAAGTTGATGCAAGAGCTGTTGGATATCTGCAG
ACAATACGTTGCCTCAGAAAATCTGGCGAACCCGCTTCCTACTCGTGAGT
TGCATTGTCGCGTCGGTGCCCAACAAGGGAGAGATTGCTATGGACCTTGC
CCAGCGCCGGATGACTACGGGCGTCTAAATCATCCTTGGATTAACGAACA
CAATCCTGCACAAACATGGAAACGAGGCGATATGGTGAATGTGAGATGGC
ATAGAGATAACCATGACGGAACTGGTTTTGTGAGACTCGTTTTAGTACCA
GTTGAAAAAATGATGGATAAGAACGCGCACGATCAATATGCGTTCCATTT
TCTTTGTATGAACGAAGGACTTCATCACTGTTCCGACCGGTCGTACGACA
CATGCGGAAATGATGCTGAAGGCATGGCGTGGCAAAAGTTGGTACAAGTT
CCAACGAGTTACCCCGATGGGGTGTACGTGTTTGGGTGGTCATGGTACGG
CGGAGGCGATTATCGCGCAATGAGTTTCTTCGGAGACTATTACAGCTGCA
GTTTTGTGAAAATCGAAGGCGGTGTGCCAGTCACCGACAGCTACGAACCG
CAATGGGACGGCAACAGATGCGTGAGTGCAACGGATCGGTTGGGGATTTG
CTGGAAAGAACCCTGCCATGTTGGTCGCATGTATGAAATGGAACCGTTCG
AATTCAAGGACGGGAAGAAACCTCTAGCGATTCAACGTTCGTGGTTTGGC
GAGGATCATGATAATGATCATGACGACGACAGCAATTCTTCTGGAAGTTC
GGCATCATTAGGCTCTGGCGCGTTTGTAGCTGTCGGGGCACGAAGTGGCG
GGCGAGGGGGAAGGAACAATGCAGCAAGCGCACTAGATCTGGACATTGGA
CAAACTATGTCGGGGTCGTCATCTGAAGACGATGAGAACGCATTCAACAC
AGAGCTTATATCAACCGGAGCTCTAGGGGTGTTCTTTCTTGACTTCACAA
ACTGGGAGAAGCTCCCACTCAAGGACGGAGAGACCTATCGACTTGACAAC
TTCAAGAACGGGTTCACCGTGGAAGCGTTCTACAACGGAGACGTGCGGTT
CATAGACTTTTTCGTGGATGGCACAAGAGTACGACGCGAGCGGTCGAAAC
CGTACGTGATGCAGGGCAACCGAGGAAAGCTTATCTTCGGGTGGAACCCA
CCGGTGGGACGCATCGTGAAAGTGCAAGTGAAGGTAACGACCAAGTCGGG
ACGCACTGAAGGCTTCGAGGCGGACATCGAGTTTGAATAA

protein sequence of Gcaud1975.t1

>Gcaud1975.t1 ID=Gcaud1975.t1|Name=Gcaud1975.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=530bp
MKSEASESNKMAADQVANVLLERMQQSGERDRIKEWLMNDLETTGWTSAL
LEKATQLRSSNERSTSENSSGVDASSSSQADQLTVRRMSSQLCKDALASV
PDSVRSKLMQELLDICRQYVASENLANPLPTRELHCRVGAQQGRDCYGPC
PAPDDYGRLNHPWINEHNPAQTWKRGDMVNVRWHRDNHDGTGFVRLVLVP
VEKMMDKNAHDQYAFHFLCMNEGLHHCSDRSYDTCGNDAEGMAWQKLVQV
PTSYPDGVYVFGWSWYGGGDYRAMSFFGDYYSCSFVKIEGGVPVTDSYEP
QWDGNRCVSATDRLGICWKEPCHVGRMYEMEPFEFKDGKKPLAIQRSWFG
EDHDNDHDDDSNSSGSSASLGSGAFVAVGARSGGRGGRNNAASALDLDIG
QTMSGSSSEDDENAFNTELISTGALGVFFLDFTNWEKLPLKDGETYRLDN
FKNGFTVEAFYNGDVRFIDFFVDGTRVRRERSKPYVMQGNRGKLIFGWNP
PVGRIVKVQVKVTTKSGRTEGFEADIEFE*

mRNA from alignment at NODE_297_length_31759_cov_4.165656:27745..30761-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1975.t1 ID=Gcaud1975.t1|Name=Gcaud1975.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3017bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:27745..30761- (Gracilaria caudata M_176_S67 male)
ATGAAGAGCGAGGCGTCTGAAAGCAACAAAATGGCGGCTGATCAAGTTGC
GAACGTGCTTTTAGAACGAATGCAACAGTCTGGCGAGCGCGACCGAATCA
AAGAGTGGTTGATGAATGACTTGGAAACCACCGGTTGGACATCTGCTTTG
CTCGAGAAAGCCACGCAACTGCGTTCTTCAAACGAGAGGTCAACCTCGGA
GAACAGTTCCGGAGTGGATGCCTCTTCATCATCACAGGCAGATCAGCTTA
CTGTGAGACGCATGTCGTCGCAGTTGTGTAAAGATGCTTTAGGTACGTCG
TTTTACTAAGTAATCGCTTCTTGCAATTATGCCTTTTTTGCTCATACTTT
CGGTTTCTTTCGGTTTCTTTCAGCTTCTGTGCCGGACTCTGTGCGTTCGA
AGTTGATGCAAGAGCTGTTGGATATCTGCAGACAATACGTTGCCTCAGAA
AATCTGGCGAGTACCATCCAAAAATCAAACAAGTGATTGATGTACCCTGT
ATGTGTCCCGGTGTTTTCTACAATTTGTTTGTTTATAGTCATTTCTTTGT
CTCCACACGGCCCGCTTTGACTTAAACAAGAGCTTCGGGGTGGTTTCCTG
TTTGAGTTTGCCCTTCAGCTCCAGTAAGCTTTTTCTTCCCAGGAGTGTGC
TGTTGATGCGCTTCATTGCTTCGCCTTCAGGCGTTATTTACAAATCATGC
ACGCTGAGTTTCTACCTTGTTGGCACATTGAGCCCAGGCACCATCCTGTC
AGCACCATGAGTCACACCAGAGAAACCGCACTGCTTTTCAGCACTTCTAA
ACGGGACACAAAACAACTGACGTACAACAACAACACTCCGGGGCAACGGT
TTCAACCAAGAAGCCAACAGGCTGCTATCCTGAGACTTTCTTCCCATCGG
GTCAAAATGTAATCTACATGTGTGTAATGTTCGTTCATTCTCCCGAACCT
GCCTAAAACAACTGCCAGCAATGTCCTCTCAAAGCTCCAACCCAACAGTT
CAGATCGGGCACCGATAACAAACCCCGGCAACTAAGCTCCAAAGAAGCAA
CAAAGTCTGACATTAGACTCGTTCGAAAAAAGGGCGATCGGTACAACTGG
CCCACACGTCGATATCTAGTTCAAAGGTCCATGAATGCATCTCAAACAAC
ATTCCAAATCGATCGCCCCGATTTCAAGTGGCATCGGACGAGCAGTGCAC
TTCGGCGCCGCCACGTTATTTTTGTCTTGTGCGTGCTGTGGTGCGATGAC
GATTCAGTCTTTTCGTTGATGCGGAATTGAAGCGTGCGGATGACCAATGT
CATCACTATGACATTCGGGCCGATTTCCTAGACTCCAGCTTACGTCGAGG
ATGCATGCTTGCGAAATTTGGTTCGGTTACGGCGAGTGTCGCTTCAAAGA
CTGAATGACGGAGCCCAGGAATTTGCACTCTATAATGAAGGGCGAACTAT
CGACGCTGGTCCTCCCGCTATCTTTGTCAAGACTCAGCAGTGCTAAACTT
TGCTGTCGAGTCTAAACTCACCTGCTATCTACCAACGCTCTTTGAAAAGC
TTTCTTCTTACCTCTCTTTCAAATTCATTGAAACTGGTTTTCATCCGTTT
CTTCATGACACATAATAACAGATTGCGATATTCCGCGGTTACTCTCTCAT
TTGTGGTCGTTTTTTTCACACTTGCGAAGGTCGTTTTCGGTCATTCTCAT
CTAGCAGACCCGCTTCCTACTCGTGAGTTGCATTGTCGCGTCGGTGCCCA
ACAAGGGAGAGATTGCTATGGACCTTGCCCAGCGCCGGATGACTACGGGC
GTCTAAATCATCCTTGGATTAACGAACACAATCCTGCACAAACATGGAAA
CGAGGCGATATGGTGAATGTGAGATGGCATAGAGATAACCGTAAGTATAA
TGGTCATACCACTGAAATACTGAATATGGCATTGTTGCTGACATGAGTTA
TAATGCGTTTCTGCTGTTGGTGTACATCTTTACAAACAGATGACGGAACT
GGTTTTGTGAGACTCGTTTTAGTACCAGTTGAAAAAATGATGGATAAGAA
CGCGCACGATCAATATGCGTTCCATTTTCTTTGTATGAACGAAGGACTTC
ATCACTGTTCCGACCGGTCGTACGACACATGCGGAAATGATGCTGAAGGC
ATGGCGTGGCAAAAGTTGGTACAAGTTCCAACGAGTTACCCCGATGGGGT
GTACGTGTTTGGGTGGTCATGGTACGGCGGAGGCGATTATCGCGCAATGA
GTTTCTTCGGAGACTATTACAGCTGCAGTTTTGTGAAAATCGAAGGCGGT
GTGCCAGTCACCGACAGCTACGAACCGCAATGGGACGGCAACAGATGCGT
GAGTGCAACGGATCGGTTGGGGATTTGCTGGAAAGAACCCTGCCATGTTG
GTCGCATGTATGAAATGGAACCGTTCGAATTCAAGGACGGGAAGAAACCT
CTAGCGATTCAACGTTCGTGGTTTGGCGAGGATCATGATAATGATCATGA
CGACGACAGCAATTCTTCTGGAAGTTCGGCATCATTAGGCTCTGGCGCGT
TTGTAGCTGTCGGGGCACGAAGTGGCGGGCGAGGGGGAAGGAACAATGCA
GCAAGCGCACTAGATCTGGACATTGGACAAACTATGTCGGGGTCGTCATC
TGAAGACGATGAGAACGCATTCAACACAGAGCTTATATCAACCGGAGCTC
TAGGGGTGTTCTTTCTTGACTTCACAAACTGGGAGAAGCTCCCACTCAAG
GACGGAGAGACCTATCGACTTGACAACTTCAAGAACGGGTTCACCGTGGA
AGCGTTCTACAACGGAGACGTGCGGTTCATAGACTTTTTCGTGGATGGCA
CAAGAGTACGACGCGAGCGGTCGAAACCGTACGTGATGCAGGGCAACCGA
GGAAAGCTTATCTTCGGGTGGAACCCACCGGTGGGACGCATCGTGAAAGT
GCAAGTGAAGGTAACGACCAAGTCGGGACGCACTGAAGGCTTCGAGGCGG
ACATCGAGTTTGAATAA

Coding sequence (CDS) from alignment at NODE_297_length_31759_cov_4.165656:27745..30761-

>Gcaud1975.t1 ID=Gcaud1975.t1|Name=Gcaud1975.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1590bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:27745..30761- (Gracilaria caudata M_176_S67 male)
ATGAAGAGCGAGGCGTCTGAAAGCAACAAAATGGCGGCTGATCAAGTTGC
GAACGTGCTTTTAGAACGAATGCAACAGTCTGGCGAGCGCGACCGAATCA
AAGAGTGGTTGATGAATGACTTGGAAACCACCGGTTGGACATCTGCTTTG
CTCGAGAAAGCCACGCAACTGCGTTCTTCAAACGAGAGGTCAACCTCGGA
GAACAGTTCCGGAGTGGATGCCTCTTCATCATCACAGGCAGATCAGCTTA
CTGTGAGACGCATGTCGTCGCAGTTGTGTAAAGATGCTTTAGCTTCTGTG
CCGGACTCTGTGCGTTCGAAGTTGATGCAAGAGCTGTTGGATATCTGCAG
ACAATACGTTGCCTCAGAAAATCTGGCGAACCCGCTTCCTACTCGTGAGT
TGCATTGTCGCGTCGGTGCCCAACAAGGGAGAGATTGCTATGGACCTTGC
CCAGCGCCGGATGACTACGGGCGTCTAAATCATCCTTGGATTAACGAACA
CAATCCTGCACAAACATGGAAACGAGGCGATATGGTGAATGTGAGATGGC
ATAGAGATAACCATGACGGAACTGGTTTTGTGAGACTCGTTTTAGTACCA
GTTGAAAAAATGATGGATAAGAACGCGCACGATCAATATGCGTTCCATTT
TCTTTGTATGAACGAAGGACTTCATCACTGTTCCGACCGGTCGTACGACA
CATGCGGAAATGATGCTGAAGGCATGGCGTGGCAAAAGTTGGTACAAGTT
CCAACGAGTTACCCCGATGGGGTGTACGTGTTTGGGTGGTCATGGTACGG
CGGAGGCGATTATCGCGCAATGAGTTTCTTCGGAGACTATTACAGCTGCA
GTTTTGTGAAAATCGAAGGCGGTGTGCCAGTCACCGACAGCTACGAACCG
CAATGGGACGGCAACAGATGCGTGAGTGCAACGGATCGGTTGGGGATTTG
CTGGAAAGAACCCTGCCATGTTGGTCGCATGTATGAAATGGAACCGTTCG
AATTCAAGGACGGGAAGAAACCTCTAGCGATTCAACGTTCGTGGTTTGGC
GAGGATCATGATAATGATCATGACGACGACAGCAATTCTTCTGGAAGTTC
GGCATCATTAGGCTCTGGCGCGTTTGTAGCTGTCGGGGCACGAAGTGGCG
GGCGAGGGGGAAGGAACAATGCAGCAAGCGCACTAGATCTGGACATTGGA
CAAACTATGTCGGGGTCGTCATCTGAAGACGATGAGAACGCATTCAACAC
AGAGCTTATATCAACCGGAGCTCTAGGGGTGTTCTTTCTTGACTTCACAA
ACTGGGAGAAGCTCCCACTCAAGGACGGAGAGACCTATCGACTTGACAAC
TTCAAGAACGGGTTCACCGTGGAAGCGTTCTACAACGGAGACGTGCGGTT
CATAGACTTTTTCGTGGATGGCACAAGAGTACGACGCGAGCGGTCGAAAC
CGTACGTGATGCAGGGCAACCGAGGAAAGCTTATCTTCGGGTGGAACCCA
CCGGTGGGACGCATCGTGAAAGTGCAAGTGAAGGTAACGACCAAGTCGGG
ACGCACTGAAGGCTTCGAGGCGGACATCGAGTTTGAATAA