Gcaud1972.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1972.t1
Unique Name	Gcaud1972.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	561

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_297_length_31759_cov_4.165656	contig	NODE_297_length_31759_cov_4.165656:21072..22754 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703605.1
Preferred name	MPK17
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00003,RC00060,RC00181,RC00496
KEGG ko	ko:K04371,ko:K11430,ko:K13105,ko:K19603,ko:K20290,ko:K20538,ko:K22312
KEGG Reaction	R03875,R03938,R04866,R04867
KEGG Pathway	ko00310,ko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04016,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05202,ko05203,ko05205,ko05206,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map00310,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04016,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05202,map05203,map05205,map05206,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG Module	M00687
GOs	GO:0000165,GO:0000226,GO:0000302,GO:0001101,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004707,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005773,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009611,GO:0009636,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009753,GO:0009755,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010638,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019222,GO:0019538,GO:0023014,GO:0023052,GO:0030865,GO:0031122,GO:0032870,GO:0033043,GO:0033993,GO:0035556,GO:0036211,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043622,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046777,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071495,GO:0071704,GO:0071840,GO:0071944,GO:0097305,GO:0097306,GO:0097435,GO:0140096,GO:1900063,GO:1900064,GO:1901564,GO:1901700,GO:1901701
Evalue	5.47e-154
EggNOG OGs	KOG0660@1\|root,KOG0660@2759\|Eukaryota
EC	2.1.1.43,2.7.11.24,2.8.2.39
Description	MAP kinase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko03041,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1972	Gcaud1972	Gracilaria caudata M_176_S67 male	gene	NODE_297_length_31759_cov_4.165656 21072..22754 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1972.t1.stop1	Gcaud1972.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_297_length_31759_cov_4.165656 21072..21074 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1972.t1.CDS1	Gcaud1972.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_297_length_31759_cov_4.165656 21072..22754 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1972.t1.exon1	Gcaud1972.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_297_length_31759_cov_4.165656 21072..22754 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1972.t1.start1	Gcaud1972.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_297_length_31759_cov_4.165656 22752..22754 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1972.t1	Gcaud1972.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_297_length_31759_cov_4.165656 21072..22754 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_297_length_31759_cov_4.165656:21072..22754-
coding sequence from alignment at NODE_297_length_31759_cov_4.165656:21072..22754-

mRNA sequence

>Gcaud1972.t1 ID=Gcaud1972.t1|Name=Gcaud1972.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=561bp
MERPRNEEERRRLLERLKEEFFLPPLLEHKYKLEQVIGEGSYGIVCSAVN
TETNEKVAVKRIMRVFEEAPEATRTLRELKFLRLLKDHENIITIKDVLLP
SDRDRFDDVFVVLELMPTDLMRVLRSRIELSPDHIRWLVFQLIRGIFYIH
TSRVFHRDLKPSNILINARCDLRIVDFGLSRAAFDAQEPDAVFWTDYVAT
RWYRAPELIMAANTNYTTAIDMWSIGCIFAEMLNNGRAIFPGHNPEDQLQ
RIINVCGTPTPEAIAAVREPRARALIARMPPRQRKPLKQLFPHAEPLAVD
LLEKILEFDPAKRLSAEEALKHQYLRMDTVTRGTPIDMNEFAFERRSYTV
QELRMLFLEEILKYHPEHRDLYLRPKPEPRLQYAPVDQAARFREAMIANQ
NGMDPPRAWESMPNQRLTTYYRDTKPHPPQHSEAGSYVQRGVGGNGVMTA
TTDAENSVRQPDERSNQARGPHVTVRTDGEASIGGRHTDQDGSGQDEEQQ
LLQYTQLGKFSSVDSATSTFNQDSSQLGPPVVRRVSETIDSMTDVNPEMI
MDASAGGEVG*

spliced messenger RNA

>Gcaud1972.t1 ID=Gcaud1972.t1|Name=Gcaud1972.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1683bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:21072..22754- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGTCCGCGCAATGAGGAGGAACGACGTCGCCTCCTCGAGCGTCT
CAAGGAAGAGTTCTTTCTCCCGCCTTTGCTTGAACACAAGTACAAACTCG
AACAAGTAATAGGCGAGGGCAGTTATGGAATCGTTTGCTCAGCTGTCAAC
ACCGAAACCAACGAGAAAGTCGCCGTCAAACGTATCATGCGCGTGTTTGA
AGAAGCTCCTGAAGCAACACGAACCCTTCGCGAGTTAAAGTTCCTCCGCT
TGCTCAAAGACCACGAGAACATTATCACCATCAAAGATGTGTTGCTTCCA
TCTGACCGTGATCGTTTTGATGATGTCTTCGTCGTGCTTGAACTTATGCC
CACTGACCTCATGCGCGTGCTTCGTTCGCGTATAGAGCTTTCGCCTGACC
ACATTCGCTGGCTAGTCTTCCAACTCATTCGCGGTATATTTTATATTCAC
ACCTCCCGCGTGTTTCACCGGGACCTCAAGCCGAGCAACATTCTTATTAA
CGCCCGATGCGACTTGCGAATTGTCGACTTTGGTCTTTCTCGGGCCGCCT
TTGATGCACAGGAGCCGGATGCCGTATTCTGGACCGACTACGTCGCAACA
CGATGGTACAGAGCTCCAGAGCTCATCATGGCGGCGAACACAAATTATAC
CACTGCCATTGACATGTGGTCTATAGGTTGCATCTTTGCTGAGATGCTCA
ACAACGGTCGCGCCATCTTTCCTGGTCATAATCCAGAAGACCAGTTGCAA
AGAATCATTAACGTATGCGGTACCCCCACTCCAGAAGCTATTGCTGCCGT
TCGCGAGCCTCGCGCACGTGCCTTAATTGCCCGCATGCCTCCGCGACAAC
GAAAGCCCTTGAAACAACTTTTCCCACACGCTGAACCTCTGGCTGTTGAT
CTTCTCGAGAAGATTCTTGAATTTGATCCAGCGAAACGCCTCAGTGCGGA
AGAGGCTTTGAAACATCAATACTTGCGAATGGACACAGTCACAAGAGGTA
CACCCATTGATATGAATGAATTTGCTTTTGAAAGAAGAAGTTATACTGTT
CAAGAGTTGAGAATGCTTTTCTTAGAAGAGATTCTTAAGTATCATCCGGA
GCATCGCGATTTATACTTGCGACCGAAGCCGGAACCCCGTTTACAGTACG
CTCCTGTCGATCAGGCCGCTCGATTCCGTGAAGCCATGATTGCCAATCAA
AACGGAATGGACCCGCCACGGGCGTGGGAGTCAATGCCCAATCAGCGGCT
CACCACATATTATCGCGATACCAAACCACATCCGCCACAACATAGCGAAG
CTGGTAGCTATGTGCAACGAGGTGTGGGAGGAAACGGCGTTATGACTGCC
ACCACAGACGCAGAGAATAGTGTTCGTCAACCTGATGAACGCTCTAACCA
AGCCCGTGGACCTCATGTTACCGTACGCACGGACGGTGAGGCTTCAATTG
GAGGTCGTCACACTGATCAGGATGGTTCAGGTCAGGACGAGGAGCAACAG
CTTTTGCAGTATACACAACTTGGAAAGTTTTCCAGCGTGGATAGTGCAAC
ATCGACATTCAATCAGGATTCTTCCCAGTTGGGACCCCCGGTTGTGCGAA
GAGTTAGTGAAACCATTGATAGTATGACCGATGTGAATCCAGAAATGATC
ATGGATGCTTCGGCAGGAGGCGAAGTGGGTTGA

protein sequence of Gcaud1972.t1

>Gcaud1972.t1 ID=Gcaud1972.t1|Name=Gcaud1972.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=561bp
MERPRNEEERRRLLERLKEEFFLPPLLEHKYKLEQVIGEGSYGIVCSAVN
TETNEKVAVKRIMRVFEEAPEATRTLRELKFLRLLKDHENIITIKDVLLP
SDRDRFDDVFVVLELMPTDLMRVLRSRIELSPDHIRWLVFQLIRGIFYIH
TSRVFHRDLKPSNILINARCDLRIVDFGLSRAAFDAQEPDAVFWTDYVAT
RWYRAPELIMAANTNYTTAIDMWSIGCIFAEMLNNGRAIFPGHNPEDQLQ
RIINVCGTPTPEAIAAVREPRARALIARMPPRQRKPLKQLFPHAEPLAVD
LLEKILEFDPAKRLSAEEALKHQYLRMDTVTRGTPIDMNEFAFERRSYTV
QELRMLFLEEILKYHPEHRDLYLRPKPEPRLQYAPVDQAARFREAMIANQ
NGMDPPRAWESMPNQRLTTYYRDTKPHPPQHSEAGSYVQRGVGGNGVMTA
TTDAENSVRQPDERSNQARGPHVTVRTDGEASIGGRHTDQDGSGQDEEQQ
LLQYTQLGKFSSVDSATSTFNQDSSQLGPPVVRRVSETIDSMTDVNPEMI
MDASAGGEVG*

mRNA from alignment at NODE_297_length_31759_cov_4.165656:21072..22754-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1972.t1 ID=Gcaud1972.t1|Name=Gcaud1972.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1683bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:21072..22754- (Gracilaria caudata M_176_S67 male)
ATGGAGCGTCCGCGCAATGAGGAGGAACGACGTCGCCTCCTCGAGCGTCT
CAAGGAAGAGTTCTTTCTCCCGCCTTTGCTTGAACACAAGTACAAACTCG
AACAAGTAATAGGCGAGGGCAGTTATGGAATCGTTTGCTCAGCTGTCAAC
ACCGAAACCAACGAGAAAGTCGCCGTCAAACGTATCATGCGCGTGTTTGA
AGAAGCTCCTGAAGCAACACGAACCCTTCGCGAGTTAAAGTTCCTCCGCT
TGCTCAAAGACCACGAGAACATTATCACCATCAAAGATGTGTTGCTTCCA
TCTGACCGTGATCGTTTTGATGATGTCTTCGTCGTGCTTGAACTTATGCC
CACTGACCTCATGCGCGTGCTTCGTTCGCGTATAGAGCTTTCGCCTGACC
ACATTCGCTGGCTAGTCTTCCAACTCATTCGCGGTATATTTTATATTCAC
ACCTCCCGCGTGTTTCACCGGGACCTCAAGCCGAGCAACATTCTTATTAA
CGCCCGATGCGACTTGCGAATTGTCGACTTTGGTCTTTCTCGGGCCGCCT
TTGATGCACAGGAGCCGGATGCCGTATTCTGGACCGACTACGTCGCAACA
CGATGGTACAGAGCTCCAGAGCTCATCATGGCGGCGAACACAAATTATAC
CACTGCCATTGACATGTGGTCTATAGGTTGCATCTTTGCTGAGATGCTCA
ACAACGGTCGCGCCATCTTTCCTGGTCATAATCCAGAAGACCAGTTGCAA
AGAATCATTAACGTATGCGGTACCCCCACTCCAGAAGCTATTGCTGCCGT
TCGCGAGCCTCGCGCACGTGCCTTAATTGCCCGCATGCCTCCGCGACAAC
GAAAGCCCTTGAAACAACTTTTCCCACACGCTGAACCTCTGGCTGTTGAT
CTTCTCGAGAAGATTCTTGAATTTGATCCAGCGAAACGCCTCAGTGCGGA
AGAGGCTTTGAAACATCAATACTTGCGAATGGACACAGTCACAAGAGGTA
CACCCATTGATATGAATGAATTTGCTTTTGAAAGAAGAAGTTATACTGTT
CAAGAGTTGAGAATGCTTTTCTTAGAAGAGATTCTTAAGTATCATCCGGA
GCATCGCGATTTATACTTGCGACCGAAGCCGGAACCCCGTTTACAGTACG
CTCCTGTCGATCAGGCCGCTCGATTCCGTGAAGCCATGATTGCCAATCAA
AACGGAATGGACCCGCCACGGGCGTGGGAGTCAATGCCCAATCAGCGGCT
CACCACATATTATCGCGATACCAAACCACATCCGCCACAACATAGCGAAG
CTGGTAGCTATGTGCAACGAGGTGTGGGAGGAAACGGCGTTATGACTGCC
ACCACAGACGCAGAGAATAGTGTTCGTCAACCTGATGAACGCTCTAACCA
AGCCCGTGGACCTCATGTTACCGTACGCACGGACGGTGAGGCTTCAATTG
GAGGTCGTCACACTGATCAGGATGGTTCAGGTCAGGACGAGGAGCAACAG
CTTTTGCAGTATACACAACTTGGAAAGTTTTCCAGCGTGGATAGTGCAAC
ATCGACATTCAATCAGGATTCTTCCCAGTTGGGACCCCCGGTTGTGCGAA
GAGTTAGTGAAACCATTGATAGTATGACCGATGTGAATCCAGAAATGATC
ATGGATGCTTCGGCAGGAGGCGAAGTGGGTTGA

Coding sequence (CDS) from alignment at NODE_297_length_31759_cov_4.165656:21072..22754-

>Gcaud1972.t1 ID=Gcaud1972.t1|Name=Gcaud1972.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1683bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:21072..22754- (Gracilaria caudata M_176_S67 male)
ATGGAGCGTCCGCGCAATGAGGAGGAACGACGTCGCCTCCTCGAGCGTCT
CAAGGAAGAGTTCTTTCTCCCGCCTTTGCTTGAACACAAGTACAAACTCG
AACAAGTAATAGGCGAGGGCAGTTATGGAATCGTTTGCTCAGCTGTCAAC
ACCGAAACCAACGAGAAAGTCGCCGTCAAACGTATCATGCGCGTGTTTGA
AGAAGCTCCTGAAGCAACACGAACCCTTCGCGAGTTAAAGTTCCTCCGCT
TGCTCAAAGACCACGAGAACATTATCACCATCAAAGATGTGTTGCTTCCA
TCTGACCGTGATCGTTTTGATGATGTCTTCGTCGTGCTTGAACTTATGCC
CACTGACCTCATGCGCGTGCTTCGTTCGCGTATAGAGCTTTCGCCTGACC
ACATTCGCTGGCTAGTCTTCCAACTCATTCGCGGTATATTTTATATTCAC
ACCTCCCGCGTGTTTCACCGGGACCTCAAGCCGAGCAACATTCTTATTAA
CGCCCGATGCGACTTGCGAATTGTCGACTTTGGTCTTTCTCGGGCCGCCT
TTGATGCACAGGAGCCGGATGCCGTATTCTGGACCGACTACGTCGCAACA
CGATGGTACAGAGCTCCAGAGCTCATCATGGCGGCGAACACAAATTATAC
CACTGCCATTGACATGTGGTCTATAGGTTGCATCTTTGCTGAGATGCTCA
ACAACGGTCGCGCCATCTTTCCTGGTCATAATCCAGAAGACCAGTTGCAA
AGAATCATTAACGTATGCGGTACCCCCACTCCAGAAGCTATTGCTGCCGT
TCGCGAGCCTCGCGCACGTGCCTTAATTGCCCGCATGCCTCCGCGACAAC
GAAAGCCCTTGAAACAACTTTTCCCACACGCTGAACCTCTGGCTGTTGAT
CTTCTCGAGAAGATTCTTGAATTTGATCCAGCGAAACGCCTCAGTGCGGA
AGAGGCTTTGAAACATCAATACTTGCGAATGGACACAGTCACAAGAGGTA
CACCCATTGATATGAATGAATTTGCTTTTGAAAGAAGAAGTTATACTGTT
CAAGAGTTGAGAATGCTTTTCTTAGAAGAGATTCTTAAGTATCATCCGGA
GCATCGCGATTTATACTTGCGACCGAAGCCGGAACCCCGTTTACAGTACG
CTCCTGTCGATCAGGCCGCTCGATTCCGTGAAGCCATGATTGCCAATCAA
AACGGAATGGACCCGCCACGGGCGTGGGAGTCAATGCCCAATCAGCGGCT
CACCACATATTATCGCGATACCAAACCACATCCGCCACAACATAGCGAAG
CTGGTAGCTATGTGCAACGAGGTGTGGGAGGAAACGGCGTTATGACTGCC
ACCACAGACGCAGAGAATAGTGTTCGTCAACCTGATGAACGCTCTAACCA
AGCCCGTGGACCTCATGTTACCGTACGCACGGACGGTGAGGCTTCAATTG
GAGGTCGTCACACTGATCAGGATGGTTCAGGTCAGGACGAGGAGCAACAG
CTTTTGCAGTATACACAACTTGGAAAGTTTTCCAGCGTGGATAGTGCAAC
ATCGACATTCAATCAGGATTCTTCCCAGTTGGGACCCCCGGTTGTGCGAA
GAGTTAGTGAAACCATTGATAGTATGACCGATGTGAATCCAGAAATGATC
ATGGATGCTTCGGCAGGAGGCGAAGTGGGTTGA