Gcaud1971.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1971.t1
Unique Name	Gcaud1971.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	520

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_297_length_31759_cov_4.165656	contig	NODE_297_length_31759_cov_4.165656:18732..20291 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709246.1
Preferred name	SWC4
PFAMs	DMAP1,SANT_DAMP1_like
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11324,ko:K13865,ko:K21412
KEGG TC	2.A.3.3.5
GOs	GO:0000122,GO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0000981,GO:0001085,GO:0001103,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006305,GO:0006306,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032259,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0032991,GO:0033157,GO:0033554,GO:0034641,GO:0034728,GO:0035267,GO:0036211,GO:0042306,GO:0042307,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044728,GO:0045892,GO:0045934,GO:0046483,GO:0046822,GO:0046824,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051222,GO:0051223,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070491,GO:0070603,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090087,GO:0090304,GO:0090316,GO:0097159,GO:0097346,GO:0140110,GO:1900180,GO:1900182,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904949,GO:1904951,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Evalue	1.18e-61
EggNOG OGs	KOG2656@1\|root,KOG2656@2759\|Eukaryota
Description	histone H2A acetylation
COG category	S
BRITE	ko00000,ko02000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1971	Gcaud1971	Gracilaria caudata M_176_S67 male	gene	NODE_297_length_31759_cov_4.165656 18732..20291 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1971.t1.start1	Gcaud1971.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_297_length_31759_cov_4.165656 18732..18734 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1971.t1.CDS1	Gcaud1971.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_297_length_31759_cov_4.165656 18732..20291 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1971.t1.exon1	Gcaud1971.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_297_length_31759_cov_4.165656 18732..20291 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1971.t1.stop1	Gcaud1971.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_297_length_31759_cov_4.165656 20289..20291 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1971.t1	Gcaud1971.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_297_length_31759_cov_4.165656 18732..20291 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_297_length_31759_cov_4.165656:18732..20291+
coding sequence from alignment at NODE_297_length_31759_cov_4.165656:18732..20291+

mRNA sequence

>Gcaud1971.t1 ID=Gcaud1971.t1|Name=Gcaud1971.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=520bp
MPTTPTHADPPSVLPSKTQSPSVSSLAAAQPPVSTTAANAAKPLLTASSA
PQTPTTAAKPPLPQASKASVRTAHPTRVNSTKNGTRPAPQINQPPPKRMH
ALLPNRPPSTPGHNENAVPREVFLLTGGATPAPIAPHLPPHIITSKPTRK
NAWVVAPFRNSARKDKLMFNHWTRVGASADSAFVRFNKQIRMIAYTNDEY
EKHLKNLLPLADAPKGEKERPNTNPKLPKSERNDIYKIPPQAAWTKEETD
ALFALCSRFDMRFAVIHDRWPDSLRPRSMDELKDRYYSVARRLIDVRTAA
DPSYVSKQSLAIQKHSDSIIKNQFDYEYECVRKNQLEWAYKRSKQELREE
EETVREARRIEANRRRIYKERQRLARLLAPTPDIAADLARQSAAPAKIFP
HRKTITGAFARSTMIYAQVSNSAKVAKRVDAALIELGVGLRPTPTALVVD
NFDLLRMDILAFMELARTVQRKEEEVHQLRCKLAKLKGDQPPSMPPGMSV
SNKKRRSDEADIASLFGRG*

spliced messenger RNA

>Gcaud1971.t1 ID=Gcaud1971.t1|Name=Gcaud1971.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:18732..20291+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTACCACTCCAACGCATGCTGATCCGCCCTCAGTTCTGCCTTCCAA
GACTCAATCGCCGAGCGTGTCGTCTTTGGCAGCGGCACAACCACCCGTGT
CAACGACAGCTGCTAATGCCGCCAAGCCGCTCTTGACAGCTTCAAGTGCT
CCGCAAACGCCAACAACGGCCGCGAAGCCTCCTCTTCCTCAGGCTTCCAA
AGCCTCTGTGCGCACTGCCCATCCAACTCGTGTTAATTCCACAAAGAATG
GAACGCGTCCTGCGCCCCAAATCAACCAGCCTCCGCCCAAGCGCATGCAT
GCTCTTCTGCCGAATCGGCCGCCTTCAACACCAGGGCACAATGAAAATGC
CGTGCCGCGCGAAGTATTCCTTCTCACCGGTGGGGCTACTCCGGCCCCTA
TCGCACCTCACTTGCCACCGCATATAATTACTTCAAAGCCAACAAGAAAG
AACGCGTGGGTTGTAGCGCCCTTCCGTAATTCTGCTCGAAAGGATAAGCT
TATGTTTAATCACTGGACTCGTGTTGGCGCTTCCGCCGATTCCGCGTTCG
TTCGTTTCAACAAGCAGATTAGAATGATAGCTTATACGAACGATGAATAC
GAAAAGCACCTAAAGAACTTGCTGCCTCTAGCGGATGCTCCGAAGGGAGA
GAAGGAACGCCCGAACACAAACCCCAAACTTCCAAAGAGTGAGAGAAATG
ATATCTATAAGATTCCTCCACAAGCTGCATGGACAAAAGAAGAAACAGAT
GCACTGTTCGCGTTATGCAGTCGGTTTGATATGCGTTTTGCGGTCATTCA
CGATCGCTGGCCTGACTCACTACGACCACGGTCTATGGACGAGTTAAAGG
ATCGCTATTATTCTGTAGCTCGTCGACTAATTGATGTAAGAACGGCTGCA
GACCCATCGTATGTCTCCAAGCAATCTTTAGCAATTCAGAAGCATTCGGA
TTCTATCATTAAGAATCAGTTTGATTACGAATACGAATGCGTTCGAAAGA
ATCAGTTAGAATGGGCTTATAAGCGCTCCAAACAGGAGCTACGGGAGGAG
GAAGAAACCGTTCGCGAAGCGCGTCGAATCGAGGCCAACAGACGTCGGAT
ATACAAGGAAAGACAGCGCCTTGCAAGGCTTCTTGCCCCTACGCCGGATA
TCGCGGCAGATCTTGCACGGCAATCTGCTGCCCCTGCAAAGATTTTTCCG
CATCGTAAGACCATTACTGGAGCGTTTGCCCGTAGCACTATGATCTATGC
GCAAGTTTCTAACAGCGCGAAGGTTGCAAAGCGAGTTGATGCTGCCTTAA
TCGAACTTGGGGTTGGTCTCAGACCAACACCGACTGCGTTAGTAGTTGAT
AACTTCGATCTGTTGCGAATGGACATTCTTGCGTTTATGGAACTTGCGCG
GACCGTCCAGCGAAAGGAAGAAGAAGTGCATCAGCTACGATGCAAGCTTG
CAAAATTGAAGGGAGATCAACCCCCTTCCATGCCCCCAGGAATGAGCGTC
AGCAATAAGAAGAGACGTTCGGATGAAGCAGACATCGCTTCGCTATTCGG
CAGGGGCTGA

protein sequence of Gcaud1971.t1

>Gcaud1971.t1 ID=Gcaud1971.t1|Name=Gcaud1971.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=520bp
MPTTPTHADPPSVLPSKTQSPSVSSLAAAQPPVSTTAANAAKPLLTASSA
PQTPTTAAKPPLPQASKASVRTAHPTRVNSTKNGTRPAPQINQPPPKRMH
ALLPNRPPSTPGHNENAVPREVFLLTGGATPAPIAPHLPPHIITSKPTRK
NAWVVAPFRNSARKDKLMFNHWTRVGASADSAFVRFNKQIRMIAYTNDEY
EKHLKNLLPLADAPKGEKERPNTNPKLPKSERNDIYKIPPQAAWTKEETD
ALFALCSRFDMRFAVIHDRWPDSLRPRSMDELKDRYYSVARRLIDVRTAA
DPSYVSKQSLAIQKHSDSIIKNQFDYEYECVRKNQLEWAYKRSKQELREE
EETVREARRIEANRRRIYKERQRLARLLAPTPDIAADLARQSAAPAKIFP
HRKTITGAFARSTMIYAQVSNSAKVAKRVDAALIELGVGLRPTPTALVVD
NFDLLRMDILAFMELARTVQRKEEEVHQLRCKLAKLKGDQPPSMPPGMSV
SNKKRRSDEADIASLFGRG*

mRNA from alignment at NODE_297_length_31759_cov_4.165656:18732..20291+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1971.t1 ID=Gcaud1971.t1|Name=Gcaud1971.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:18732..20291+ (Gracilaria caudata M_176_S67 male)
ATGCCTACCACTCCAACGCATGCTGATCCGCCCTCAGTTCTGCCTTCCAA
GACTCAATCGCCGAGCGTGTCGTCTTTGGCAGCGGCACAACCACCCGTGT
CAACGACAGCTGCTAATGCCGCCAAGCCGCTCTTGACAGCTTCAAGTGCT
CCGCAAACGCCAACAACGGCCGCGAAGCCTCCTCTTCCTCAGGCTTCCAA
AGCCTCTGTGCGCACTGCCCATCCAACTCGTGTTAATTCCACAAAGAATG
GAACGCGTCCTGCGCCCCAAATCAACCAGCCTCCGCCCAAGCGCATGCAT
GCTCTTCTGCCGAATCGGCCGCCTTCAACACCAGGGCACAATGAAAATGC
CGTGCCGCGCGAAGTATTCCTTCTCACCGGTGGGGCTACTCCGGCCCCTA
TCGCACCTCACTTGCCACCGCATATAATTACTTCAAAGCCAACAAGAAAG
AACGCGTGGGTTGTAGCGCCCTTCCGTAATTCTGCTCGAAAGGATAAGCT
TATGTTTAATCACTGGACTCGTGTTGGCGCTTCCGCCGATTCCGCGTTCG
TTCGTTTCAACAAGCAGATTAGAATGATAGCTTATACGAACGATGAATAC
GAAAAGCACCTAAAGAACTTGCTGCCTCTAGCGGATGCTCCGAAGGGAGA
GAAGGAACGCCCGAACACAAACCCCAAACTTCCAAAGAGTGAGAGAAATG
ATATCTATAAGATTCCTCCACAAGCTGCATGGACAAAAGAAGAAACAGAT
GCACTGTTCGCGTTATGCAGTCGGTTTGATATGCGTTTTGCGGTCATTCA
CGATCGCTGGCCTGACTCACTACGACCACGGTCTATGGACGAGTTAAAGG
ATCGCTATTATTCTGTAGCTCGTCGACTAATTGATGTAAGAACGGCTGCA
GACCCATCGTATGTCTCCAAGCAATCTTTAGCAATTCAGAAGCATTCGGA
TTCTATCATTAAGAATCAGTTTGATTACGAATACGAATGCGTTCGAAAGA
ATCAGTTAGAATGGGCTTATAAGCGCTCCAAACAGGAGCTACGGGAGGAG
GAAGAAACCGTTCGCGAAGCGCGTCGAATCGAGGCCAACAGACGTCGGAT
ATACAAGGAAAGACAGCGCCTTGCAAGGCTTCTTGCCCCTACGCCGGATA
TCGCGGCAGATCTTGCACGGCAATCTGCTGCCCCTGCAAAGATTTTTCCG
CATCGTAAGACCATTACTGGAGCGTTTGCCCGTAGCACTATGATCTATGC
GCAAGTTTCTAACAGCGCGAAGGTTGCAAAGCGAGTTGATGCTGCCTTAA
TCGAACTTGGGGTTGGTCTCAGACCAACACCGACTGCGTTAGTAGTTGAT
AACTTCGATCTGTTGCGAATGGACATTCTTGCGTTTATGGAACTTGCGCG
GACCGTCCAGCGAAAGGAAGAAGAAGTGCATCAGCTACGATGCAAGCTTG
CAAAATTGAAGGGAGATCAACCCCCTTCCATGCCCCCAGGAATGAGCGTC
AGCAATAAGAAGAGACGTTCGGATGAAGCAGACATCGCTTCGCTATTCGG
CAGGGGCTGA

Coding sequence (CDS) from alignment at NODE_297_length_31759_cov_4.165656:18732..20291+

>Gcaud1971.t1 ID=Gcaud1971.t1|Name=Gcaud1971.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1560bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:18732..20291+ (Gracilaria caudata M_176_S67 male)
ATGCCTACCACTCCAACGCATGCTGATCCGCCCTCAGTTCTGCCTTCCAA
GACTCAATCGCCGAGCGTGTCGTCTTTGGCAGCGGCACAACCACCCGTGT
CAACGACAGCTGCTAATGCCGCCAAGCCGCTCTTGACAGCTTCAAGTGCT
CCGCAAACGCCAACAACGGCCGCGAAGCCTCCTCTTCCTCAGGCTTCCAA
AGCCTCTGTGCGCACTGCCCATCCAACTCGTGTTAATTCCACAAAGAATG
GAACGCGTCCTGCGCCCCAAATCAACCAGCCTCCGCCCAAGCGCATGCAT
GCTCTTCTGCCGAATCGGCCGCCTTCAACACCAGGGCACAATGAAAATGC
CGTGCCGCGCGAAGTATTCCTTCTCACCGGTGGGGCTACTCCGGCCCCTA
TCGCACCTCACTTGCCACCGCATATAATTACTTCAAAGCCAACAAGAAAG
AACGCGTGGGTTGTAGCGCCCTTCCGTAATTCTGCTCGAAAGGATAAGCT
TATGTTTAATCACTGGACTCGTGTTGGCGCTTCCGCCGATTCCGCGTTCG
TTCGTTTCAACAAGCAGATTAGAATGATAGCTTATACGAACGATGAATAC
GAAAAGCACCTAAAGAACTTGCTGCCTCTAGCGGATGCTCCGAAGGGAGA
GAAGGAACGCCCGAACACAAACCCCAAACTTCCAAAGAGTGAGAGAAATG
ATATCTATAAGATTCCTCCACAAGCTGCATGGACAAAAGAAGAAACAGAT
GCACTGTTCGCGTTATGCAGTCGGTTTGATATGCGTTTTGCGGTCATTCA
CGATCGCTGGCCTGACTCACTACGACCACGGTCTATGGACGAGTTAAAGG
ATCGCTATTATTCTGTAGCTCGTCGACTAATTGATGTAAGAACGGCTGCA
GACCCATCGTATGTCTCCAAGCAATCTTTAGCAATTCAGAAGCATTCGGA
TTCTATCATTAAGAATCAGTTTGATTACGAATACGAATGCGTTCGAAAGA
ATCAGTTAGAATGGGCTTATAAGCGCTCCAAACAGGAGCTACGGGAGGAG
GAAGAAACCGTTCGCGAAGCGCGTCGAATCGAGGCCAACAGACGTCGGAT
ATACAAGGAAAGACAGCGCCTTGCAAGGCTTCTTGCCCCTACGCCGGATA
TCGCGGCAGATCTTGCACGGCAATCTGCTGCCCCTGCAAAGATTTTTCCG
CATCGTAAGACCATTACTGGAGCGTTTGCCCGTAGCACTATGATCTATGC
GCAAGTTTCTAACAGCGCGAAGGTTGCAAAGCGAGTTGATGCTGCCTTAA
TCGAACTTGGGGTTGGTCTCAGACCAACACCGACTGCGTTAGTAGTTGAT
AACTTCGATCTGTTGCGAATGGACATTCTTGCGTTTATGGAACTTGCGCG
GACCGTCCAGCGAAAGGAAGAAGAAGTGCATCAGCTACGATGCAAGCTTG
CAAAATTGAAGGGAGATCAACCCCCTTCCATGCCCCCAGGAATGAGCGTC
AGCAATAAGAAGAGACGTTCGGATGAAGCAGACATCGCTTCGCTATTCGG
CAGGGGCTGA