Gcaud1968.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1968.t1
Unique NameGcaud1968.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length762
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_297_length_31759_cov_4.165656contigNODE_297_length_31759_cov_4.165656:7673..10061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009034106.1
PFAMsPH,PI3_PI4_kinase
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K21289
KEGG ReactionR04545
KEGG Pathwayko00562,ko04022,ko04072,ko04151,ko04261,ko04371,ko04611,ko04725,ko04921,ko05145,ko05167,map00562,map04022,map04072,map04151,map04261,map04371,map04611,map04725,map04921,map05145,map05167
Evalue4.18e-22
EggNOG OGsCOG5032@1|root,KOG0904@2759|Eukaryota
EC2.7.1.153
Description1-phosphatidylinositol-4-phosphate 3-kinase activity
COG categoryBDLTU
BRITEko00000,ko00001,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1968Gcaud1968Gracilaria caudata M_176_S67 malegeneNODE_297_length_31759_cov_4.165656 7673..10061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1968.t1Gcaud1968.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_297_length_31759_cov_4.165656 7673..10061 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1968.t1.stop1Gcaud1968.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_297_length_31759_cov_4.165656 7673..7675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1968.t1.CDS1Gcaud1968.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_297_length_31759_cov_4.165656 7673..8237 -
Gcaud1968.t1.CDS2Gcaud1968.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_297_length_31759_cov_4.165656 8341..10061 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1968.t1.exon1Gcaud1968.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_297_length_31759_cov_4.165656 7673..8237 -
Gcaud1968.t1.exon2Gcaud1968.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_297_length_31759_cov_4.165656 8341..10061 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1968.t1.intron1Gcaud1968.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_297_length_31759_cov_4.165656 8238..8340 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1968.t1.start1Gcaud1968.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_297_length_31759_cov_4.165656 10059..10061 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1968.t1 ID=Gcaud1968.t1|Name=Gcaud1968.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=762bp
MTQDQQESAGSAPQLVTSSVSQSEDSSENDLRRLNRLSSATMLRTTFNAF
ELHPGHLVNLLLAPDLEDNLTHEALLAANNVAIFRLLPLILAAIHRIGES
PTHRQNYIKLVSVLRMRVAACRGIKLRFLLLIRNPAFAQQWNVKLVHRRD
CYQSARHALDDYAREKSGTPSSSALSQADSASFRLADSKQVAGWLEDKKT
LFSFAMRRVLHPEHGIHIRTINWFMRPFRGAFFGTELVDGIMERANFRSR
SDAVALAQRMLDHGLIHKVGGHSSKFVDSKKRVYQCRMALQREDAGHCRC
KINTNKVITSWCELGQQPIAIKQIEVQLPMDMIDLQSFEFWTSTAYVRDV
EKGYRYGYRAITHPLYCGGLNAQVNLDFSKFLSDDTAASDNASSTSFGSS
SADFASDLLTPRSVISTMEINDVRQDSSVIGSVVVRKVFSSIARPMIVEL
RVPMENADLDEDSDHIILPPGILIKEGDNLMQDLGVEVMFQVFNHIWESS
SLIKPKYEKPPYSFCYEVFPTSPTRGFMEAMTGLIPLKDYNWVNWRNRFG
SDPERVEDILRSTVGSYIGAYICGGRDRHFDNVLVKDDQYVLHIDFGFLM
GTSPPIDGPRIAIAPQMEAVFKELKIWDRFVSMCVDAFLALRAEAPAIIR
SFVMMFSKAGYEEAQIRSFVQGKFSLNVHDSEKKAGDLIRRQLVMSSGDI
KTKFKAFAHAHIDPAWYGLLEKGFPPAVAIMKLVDAKEQKAARKLSQRPH
VVVSEEQKIQL*
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spliced messenger RNA

>Gcaud1968.t1 ID=Gcaud1968.t1|Name=Gcaud1968.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2286bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:7673..10061- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCAGGACCAGCAAGAGTCGGCGGGCAGTGCCCCCCAGCTTGTCAC
TTCTTCCGTGAGTCAGTCGGAGGATTCTTCAGAGAATGACCTTCGTCGTC
TTAATCGTTTGTCGTCGGCCACCATGTTGCGGACCACCTTTAATGCATTT
GAGCTTCATCCGGGTCACCTGGTAAACCTTTTGTTAGCTCCTGACCTCGA
GGACAACCTAACGCACGAGGCCCTTCTTGCCGCCAATAATGTCGCCATTT
TCCGTCTGCTACCGCTCATCTTGGCTGCGATACACCGCATTGGCGAGTCA
CCCACTCACCGTCAGAACTACATAAAACTGGTGTCTGTTCTGCGCATGCG
CGTTGCTGCCTGTCGCGGTATCAAGTTGCGCTTTTTACTGTTGATTCGCA
ATCCTGCTTTCGCTCAGCAGTGGAACGTCAAACTCGTTCATCGAAGAGAT
TGTTACCAATCTGCCAGACATGCGCTCGATGACTATGCTCGCGAAAAGTC
CGGAACCCCCTCGTCGAGCGCTCTCTCACAAGCTGATTCTGCTTCGTTTC
GTCTCGCTGACAGCAAGCAAGTCGCTGGCTGGTTAGAGGACAAGAAGACT
CTCTTCAGTTTCGCAATGCGACGTGTACTGCATCCCGAACACGGCATTCA
CATTCGCACCATCAATTGGTTTATGCGTCCTTTCAGGGGCGCCTTTTTTG
GCACTGAACTGGTTGATGGTATTATGGAACGTGCCAATTTCAGGTCTAGA
AGTGATGCTGTTGCGCTCGCTCAACGAATGCTGGACCATGGCTTGATACA
TAAAGTTGGCGGCCACTCCTCGAAGTTTGTGGATTCGAAGAAGCGAGTAT
ACCAATGCCGAATGGCTTTGCAGCGTGAGGATGCTGGTCACTGTCGTTGT
AAGATCAATACTAATAAGGTCATTACTTCGTGGTGTGAGCTTGGGCAGCA
ACCAATTGCAATCAAACAAATTGAGGTGCAGCTCCCAATGGATATGATTG
ATTTGCAGAGCTTCGAGTTCTGGACAAGCACTGCGTATGTTCGCGATGTT
GAAAAGGGCTATCGCTATGGATATCGTGCTATCACGCATCCTTTGTACTG
CGGCGGTCTTAATGCGCAAGTTAATCTGGACTTCTCCAAATTCTTGTCGG
ATGATACTGCTGCGAGTGATAACGCGTCATCAACAAGCTTTGGTTCGTCG
TCAGCAGACTTTGCGAGCGACTTGTTGACACCGAGATCAGTGATTTCTAC
AATGGAAATCAACGACGTGCGTCAGGACAGTTCGGTCATTGGCTCTGTCG
TCGTTCGCAAAGTGTTCTCGAGCATCGCGCGCCCTATGATAGTCGAATTG
AGAGTACCCATGGAAAATGCCGATTTAGACGAAGATAGCGACCATATCAT
CCTGCCTCCTGGGATTTTGATCAAAGAAGGGGATAATCTTATGCAGGACT
TGGGTGTGGAGGTCATGTTTCAAGTATTCAACCACATCTGGGAGTCATCA
AGTCTCATTAAACCCAAGTATGAGAAGCCACCGTATAGCTTTTGCTATGA
GGTTTTCCCGACATCTCCAACACGGGGATTCATGGAGGCTATGACTGGAC
TCATTCCACTGAAGGATTATAACTGGGTGAACTGGAGAAATCGGTTTGGT
TCGGACCCCGAGCGAGTTGAAGATATTCTTCGTTCTACAGTCGGATCTTA
CATTGGAGCTTATATCTGCGGAGGGAGAGACCGACATTTCGACAATGTCT
TGGTTAAAGATGATCAGTATGTTTTACATATTGACTTCGGCTTCCTGATG
GGTACCAGTCCACCAATCGATGGACCTCGAATCGCGATTGCGCCACAGAT
GGAGGCCGTTTTTAAGGAGTTGAAGATTTGGGATAGGTTTGTGAGCATGT
GTGTGGATGCTTTCCTTGCCCTGCGGGCGGAAGCGCCTGCAATTATTCGA
TCATTTGTGATGATGTTCAGCAAGGCAGGATACGAAGAAGCACAAATACG
AAGCTTCGTGCAAGGCAAGTTTAGCTTGAATGTACATGATTCTGAGAAGA
AAGCAGGGGATTTGATCAGAAGACAGTTAGTTATGAGCTCCGGGGACATC
AAGACCAAGTTCAAGGCGTTTGCTCATGCACACATCGATCCAGCTTGGTA
CGGACTTTTGGAAAAAGGATTCCCGCCGGCTGTAGCCATCATGAAACTTG
TGGACGCGAAGGAGCAGAAGGCTGCCAGGAAGCTATCGCAGAGACCCCAT
GTTGTAGTTAGCGAGGAGCAAAAAATCCAGCTCTGA
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protein sequence of Gcaud1968.t1

>Gcaud1968.t1 ID=Gcaud1968.t1|Name=Gcaud1968.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=762bp
MTQDQQESAGSAPQLVTSSVSQSEDSSENDLRRLNRLSSATMLRTTFNAF
ELHPGHLVNLLLAPDLEDNLTHEALLAANNVAIFRLLPLILAAIHRIGES
PTHRQNYIKLVSVLRMRVAACRGIKLRFLLLIRNPAFAQQWNVKLVHRRD
CYQSARHALDDYAREKSGTPSSSALSQADSASFRLADSKQVAGWLEDKKT
LFSFAMRRVLHPEHGIHIRTINWFMRPFRGAFFGTELVDGIMERANFRSR
SDAVALAQRMLDHGLIHKVGGHSSKFVDSKKRVYQCRMALQREDAGHCRC
KINTNKVITSWCELGQQPIAIKQIEVQLPMDMIDLQSFEFWTSTAYVRDV
EKGYRYGYRAITHPLYCGGLNAQVNLDFSKFLSDDTAASDNASSTSFGSS
SADFASDLLTPRSVISTMEINDVRQDSSVIGSVVVRKVFSSIARPMIVEL
RVPMENADLDEDSDHIILPPGILIKEGDNLMQDLGVEVMFQVFNHIWESS
SLIKPKYEKPPYSFCYEVFPTSPTRGFMEAMTGLIPLKDYNWVNWRNRFG
SDPERVEDILRSTVGSYIGAYICGGRDRHFDNVLVKDDQYVLHIDFGFLM
GTSPPIDGPRIAIAPQMEAVFKELKIWDRFVSMCVDAFLALRAEAPAIIR
SFVMMFSKAGYEEAQIRSFVQGKFSLNVHDSEKKAGDLIRRQLVMSSGDI
KTKFKAFAHAHIDPAWYGLLEKGFPPAVAIMKLVDAKEQKAARKLSQRPH
VVVSEEQKIQL*
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mRNA from alignment at NODE_297_length_31759_cov_4.165656:7673..10061-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1968.t1 ID=Gcaud1968.t1|Name=Gcaud1968.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2389bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:7673..10061- (Gracilaria caudata M_176_S67 male)
ATGACTCAGGACCAGCAAGAGTCGGCGGGCAGTGCCCCCCAGCTTGTCAC TTCTTCCGTGAGTCAGTCGGAGGATTCTTCAGAGAATGACCTTCGTCGTC TTAATCGTTTGTCGTCGGCCACCATGTTGCGGACCACCTTTAATGCATTT GAGCTTCATCCGGGTCACCTGGTAAACCTTTTGTTAGCTCCTGACCTCGA GGACAACCTAACGCACGAGGCCCTTCTTGCCGCCAATAATGTCGCCATTT TCCGTCTGCTACCGCTCATCTTGGCTGCGATACACCGCATTGGCGAGTCA CCCACTCACCGTCAGAACTACATAAAACTGGTGTCTGTTCTGCGCATGCG CGTTGCTGCCTGTCGCGGTATCAAGTTGCGCTTTTTACTGTTGATTCGCA ATCCTGCTTTCGCTCAGCAGTGGAACGTCAAACTCGTTCATCGAAGAGAT TGTTACCAATCTGCCAGACATGCGCTCGATGACTATGCTCGCGAAAAGTC CGGAACCCCCTCGTCGAGCGCTCTCTCACAAGCTGATTCTGCTTCGTTTC GTCTCGCTGACAGCAAGCAAGTCGCTGGCTGGTTAGAGGACAAGAAGACT CTCTTCAGTTTCGCAATGCGACGTGTACTGCATCCCGAACACGGCATTCA CATTCGCACCATCAATTGGTTTATGCGTCCTTTCAGGGGCGCCTTTTTTG GCACTGAACTGGTTGATGGTATTATGGAACGTGCCAATTTCAGGTCTAGA AGTGATGCTGTTGCGCTCGCTCAACGAATGCTGGACCATGGCTTGATACA TAAAGTTGGCGGCCACTCCTCGAAGTTTGTGGATTCGAAGAAGCGAGTAT ACCAATGCCGAATGGCTTTGCAGCGTGAGGATGCTGGTCACTGTCGTTGT AAGATCAATACTAATAAGGTCATTACTTCGTGGTGTGAGCTTGGGCAGCA ACCAATTGCAATCAAACAAATTGAGGTGCAGCTCCCAATGGATATGATTG ATTTGCAGAGCTTCGAGTTCTGGACAAGCACTGCGTATGTTCGCGATGTT GAAAAGGGCTATCGCTATGGATATCGTGCTATCACGCATCCTTTGTACTG CGGCGGTCTTAATGCGCAAGTTAATCTGGACTTCTCCAAATTCTTGTCGG ATGATACTGCTGCGAGTGATAACGCGTCATCAACAAGCTTTGGTTCGTCG TCAGCAGACTTTGCGAGCGACTTGTTGACACCGAGATCAGTGATTTCTAC AATGGAAATCAACGACGTGCGTCAGGACAGTTCGGTCATTGGCTCTGTCG TCGTTCGCAAAGTGTTCTCGAGCATCGCGCGCCCTATGATAGTCGAATTG AGAGTACCCATGGAAAATGCCGATTTAGACGAAGATAGCGACCATATCAT CCTGCCTCCTGGGATTTTGATCAAAGAAGGGGATAATCTTATGCAGGACT TGGGTGTGGAGGTCATGTTTCAAGTATTCAACCACATCTGGGAGTCATCA AGTCTCATTAAACCCAAGTATGAGAAGCCACCGTATAGCTTTTGCTATGA GGTTTTCCCGACATCTCCAACACGGGGATTCATGGAGGCTATGACTGGAC TCATTCCACTGAAGGATTATAACTGGGTGAACTGGAGAAATCGGTTTGGT TCGGACCCCGAGCGAGTTGAAGATATTCTTCGTTCTACAGTCGGATCTTA CATTGGAGCTTATATCTGCGGGTAAGTTTATGCGACATACTTCACTTTTC TCGTATGCTTGGCTTATACTAACCGTTTTCTGTAACACTCTTGTTTTTCA CTGCATCGCTGTGTTGTAACACAGAGGGAGAGACCGACATTTCGACAATG TCTTGGTTAAAGATGATCAGTATGTTTTACATATTGACTTCGGCTTCCTG ATGGGTACCAGTCCACCAATCGATGGACCTCGAATCGCGATTGCGCCACA GATGGAGGCCGTTTTTAAGGAGTTGAAGATTTGGGATAGGTTTGTGAGCA TGTGTGTGGATGCTTTCCTTGCCCTGCGGGCGGAAGCGCCTGCAATTATT CGATCATTTGTGATGATGTTCAGCAAGGCAGGATACGAAGAAGCACAAAT ACGAAGCTTCGTGCAAGGCAAGTTTAGCTTGAATGTACATGATTCTGAGA AGAAAGCAGGGGATTTGATCAGAAGACAGTTAGTTATGAGCTCCGGGGAC ATCAAGACCAAGTTCAAGGCGTTTGCTCATGCACACATCGATCCAGCTTG GTACGGACTTTTGGAAAAAGGATTCCCGCCGGCTGTAGCCATCATGAAAC TTGTGGACGCGAAGGAGCAGAAGGCTGCCAGGAAGCTATCGCAGAGACCC CATGTTGTAGTTAGCGAGGAGCAAAAAATCCAGCTCTGA
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Coding sequence (CDS) from alignment at NODE_297_length_31759_cov_4.165656:7673..10061-

>Gcaud1968.t1 ID=Gcaud1968.t1|Name=Gcaud1968.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2286bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:7673..10061- (Gracilaria caudata M_176_S67 male)
ATGACTCAGGACCAGCAAGAGTCGGCGGGCAGTGCCCCCCAGCTTGTCAC
TTCTTCCGTGAGTCAGTCGGAGGATTCTTCAGAGAATGACCTTCGTCGTC
TTAATCGTTTGTCGTCGGCCACCATGTTGCGGACCACCTTTAATGCATTT
GAGCTTCATCCGGGTCACCTGGTAAACCTTTTGTTAGCTCCTGACCTCGA
GGACAACCTAACGCACGAGGCCCTTCTTGCCGCCAATAATGTCGCCATTT
TCCGTCTGCTACCGCTCATCTTGGCTGCGATACACCGCATTGGCGAGTCA
CCCACTCACCGTCAGAACTACATAAAACTGGTGTCTGTTCTGCGCATGCG
CGTTGCTGCCTGTCGCGGTATCAAGTTGCGCTTTTTACTGTTGATTCGCA
ATCCTGCTTTCGCTCAGCAGTGGAACGTCAAACTCGTTCATCGAAGAGAT
TGTTACCAATCTGCCAGACATGCGCTCGATGACTATGCTCGCGAAAAGTC
CGGAACCCCCTCGTCGAGCGCTCTCTCACAAGCTGATTCTGCTTCGTTTC
GTCTCGCTGACAGCAAGCAAGTCGCTGGCTGGTTAGAGGACAAGAAGACT
CTCTTCAGTTTCGCAATGCGACGTGTACTGCATCCCGAACACGGCATTCA
CATTCGCACCATCAATTGGTTTATGCGTCCTTTCAGGGGCGCCTTTTTTG
GCACTGAACTGGTTGATGGTATTATGGAACGTGCCAATTTCAGGTCTAGA
AGTGATGCTGTTGCGCTCGCTCAACGAATGCTGGACCATGGCTTGATACA
TAAAGTTGGCGGCCACTCCTCGAAGTTTGTGGATTCGAAGAAGCGAGTAT
ACCAATGCCGAATGGCTTTGCAGCGTGAGGATGCTGGTCACTGTCGTTGT
AAGATCAATACTAATAAGGTCATTACTTCGTGGTGTGAGCTTGGGCAGCA
ACCAATTGCAATCAAACAAATTGAGGTGCAGCTCCCAATGGATATGATTG
ATTTGCAGAGCTTCGAGTTCTGGACAAGCACTGCGTATGTTCGCGATGTT
GAAAAGGGCTATCGCTATGGATATCGTGCTATCACGCATCCTTTGTACTG
CGGCGGTCTTAATGCGCAAGTTAATCTGGACTTCTCCAAATTCTTGTCGG
ATGATACTGCTGCGAGTGATAACGCGTCATCAACAAGCTTTGGTTCGTCG
TCAGCAGACTTTGCGAGCGACTTGTTGACACCGAGATCAGTGATTTCTAC
AATGGAAATCAACGACGTGCGTCAGGACAGTTCGGTCATTGGCTCTGTCG
TCGTTCGCAAAGTGTTCTCGAGCATCGCGCGCCCTATGATAGTCGAATTG
AGAGTACCCATGGAAAATGCCGATTTAGACGAAGATAGCGACCATATCAT
CCTGCCTCCTGGGATTTTGATCAAAGAAGGGGATAATCTTATGCAGGACT
TGGGTGTGGAGGTCATGTTTCAAGTATTCAACCACATCTGGGAGTCATCA
AGTCTCATTAAACCCAAGTATGAGAAGCCACCGTATAGCTTTTGCTATGA
GGTTTTCCCGACATCTCCAACACGGGGATTCATGGAGGCTATGACTGGAC
TCATTCCACTGAAGGATTATAACTGGGTGAACTGGAGAAATCGGTTTGGT
TCGGACCCCGAGCGAGTTGAAGATATTCTTCGTTCTACAGTCGGATCTTA
CATTGGAGCTTATATCTGCGGAGGGAGAGACCGACATTTCGACAATGTCT
TGGTTAAAGATGATCAGTATGTTTTACATATTGACTTCGGCTTCCTGATG
GGTACCAGTCCACCAATCGATGGACCTCGAATCGCGATTGCGCCACAGAT
GGAGGCCGTTTTTAAGGAGTTGAAGATTTGGGATAGGTTTGTGAGCATGT
GTGTGGATGCTTTCCTTGCCCTGCGGGCGGAAGCGCCTGCAATTATTCGA
TCATTTGTGATGATGTTCAGCAAGGCAGGATACGAAGAAGCACAAATACG
AAGCTTCGTGCAAGGCAAGTTTAGCTTGAATGTACATGATTCTGAGAAGA
AAGCAGGGGATTTGATCAGAAGACAGTTAGTTATGAGCTCCGGGGACATC
AAGACCAAGTTCAAGGCGTTTGCTCATGCACACATCGATCCAGCTTGGTA
CGGACTTTTGGAAAAAGGATTCCCGCCGGCTGTAGCCATCATGAAACTTG
TGGACGCGAAGGAGCAGAAGGCTGCCAGGAAGCTATCGCAGAGACCCCAT
GTTGTAGTTAGCGAGGAGCAAAAAATCCAGCTCTGA
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