Gcaud1966.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1966.t1
Unique Name	Gcaud1966.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	423

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_297_length_31759_cov_4.165656	contig	NODE_297_length_31759_cov_4.165656:4712..5980 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1966	Gcaud1966	Gracilaria caudata M_176_S67 male	gene	NODE_297_length_31759_cov_4.165656 4712..5980 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1966.t1.start1	Gcaud1966.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_297_length_31759_cov_4.165656 4712..4714 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1966.t1.CDS1	Gcaud1966.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_297_length_31759_cov_4.165656 4712..5980 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1966.t1.exon1	Gcaud1966.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_297_length_31759_cov_4.165656 4712..5980 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1966.t1.stop1	Gcaud1966.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_297_length_31759_cov_4.165656 5978..5980 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1966.t1	Gcaud1966.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_297_length_31759_cov_4.165656 4712..5980 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_297_length_31759_cov_4.165656:4712..5980+
coding sequence from alignment at NODE_297_length_31759_cov_4.165656:4712..5980+

mRNA sequence

>Gcaud1966.t1 ID=Gcaud1966.t1|Name=Gcaud1966.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=423bp
MPRNGDDKSSVQLSPAQFFKDMKDMMQKKAEQSSRAQSAGSGVTKKSSSS
MPGAHELPVVSNPLQQHASHASMQNMMRPAQRMLLAVAQSSAHAQAAMAA
SHPYGASQSSSLTAFDVDAATFQLAGTRIDEPQPTHGASNNHTASSTLEE
EALVRSPSQELMASNMTLSESVSQGLDLHSTHLSSDAANARKQRADDIDK
VLNSAGMSVGLSNHCNVSATTTNQMFDASRFNNGKNSASVSRSFSFLFKN
NAPFASRENSMDFRKGDLGGKRDMSMDMIRRDMSMDLLCARRVGSQEPID
GELVRDMSVDFFGSSLRNANRDFSMEMQFPTDSSGAQSGAVFELGALTDD
VVFGQPFHNLHAAAKSEHNGAADARDGRFSRSKIGMSQDDLMVHVLANQA
HHQTYRRNVNGSIDDLRELKMP*

spliced messenger RNA

>Gcaud1966.t1 ID=Gcaud1966.t1|Name=Gcaud1966.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:4712..5980+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcctaGAAACGGCGATGACAAGAGCTCGGTGCAACTTTCGCCCGCGCA
GTTCTTCAAGGACATGAAGGACATGATGCAGAAGAAGGCGGAGCAATCGT
CGCGGGCGCAGAGCGCGGGCTCGGGTGTGACGAAGAAGAGCTCGTCGTCC
ATGCCGGGAGCGCATGAGCTGCCGGTGGTGTCCAACCCGTTGCAACAACA
TGCGTCGCACGCGTCGATGCAAAACATGATGCGTCCTGCACAACGCATGC
TGCTGGCGGTTGCACAGTCGTCTGCGCATGCTCAGGCCGCGATGGCTGCG
TCGCACCCGTATGGCGCTTCGCAGTCCTCGTCGCTCACTGCTTTTGATGT
GGATGCGGCCACTTTTCAACTGGCGGGTACTAGGATTGATGAACCGCAGC
CGACGCATGGCGCGAGTAATAATCATACTGCTTCTTCGACGCTTGAAGAG
GAGGCGCTTGTGCGGTCGCCTTCGCAGGAGCTCATGGCGTCGAATATGAC
GCTGTCGGAGTCGGTGTCGCAGGGGCTGGACTTGCATTCGACGCATCTGT
CGTCCGATGCGGCGAATGCTAGGAAACAGCGCGCGGATGATATTGACAAG
GTGCTCAACAGCGCGGGCATGTCGGTTGGACTGTCCAACCATTGTAATGT
ATCTGCTACTACTACAAACCAGATGTTTGATGCGTCTCGCTTCAACAATG
GCAAGAACTCGGCGTCGGTGAGTCGCTCGTTTAGCTTTCTGTTCAAGAAT
AATGCGCCGTTCGCGTCGAGGGAGAACTCGATGGACTTTCGAAAGGGTGA
TCTGGGTGGAAAGCGTGACATGTCGATGGATATGATCCGAAGAGACATGT
CGATGGATTTACTGTGCGCGAGGAGAGTGGGCTCGCAGGAACCGATTGAC
GGCGAGCTTGTGCGTGACATGAGCGTGGACTTTTTTGGAAGCTCGTTACG
AAACGCCAACCGCGATTTTAGCATGGAGATGCAGTTCCCCACCGACTCGA
GCGGCGCGCAGTCTGGCGCGGTGTTCGAGCTGGGCGCGCTCACGGATGAC
GTGGTGTTTGGGCAACCGTTTCATAACTTGCACGCGGCTGCGAAGAGTGA
GCATAATGGCGCGGCTGATGCGCGTGACGGCAGGTTCTCGAGGTCAAAAA
TAGGAATGTCGCAAGACGACCTGATGGTGCATGTGTTGGCAAACCAGGCT
CATCACCAGACGTACCGACGCAATGTGAATGGAAGCATAGACGATCTCCG
CGAGCTCAAGATGCCGTAG

protein sequence of Gcaud1966.t1

>Gcaud1966.t1 ID=Gcaud1966.t1|Name=Gcaud1966.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=423bp
MPRNGDDKSSVQLSPAQFFKDMKDMMQKKAEQSSRAQSAGSGVTKKSSSS
MPGAHELPVVSNPLQQHASHASMQNMMRPAQRMLLAVAQSSAHAQAAMAA
SHPYGASQSSSLTAFDVDAATFQLAGTRIDEPQPTHGASNNHTASSTLEE
EALVRSPSQELMASNMTLSESVSQGLDLHSTHLSSDAANARKQRADDIDK
VLNSAGMSVGLSNHCNVSATTTNQMFDASRFNNGKNSASVSRSFSFLFKN
NAPFASRENSMDFRKGDLGGKRDMSMDMIRRDMSMDLLCARRVGSQEPID
GELVRDMSVDFFGSSLRNANRDFSMEMQFPTDSSGAQSGAVFELGALTDD
VVFGQPFHNLHAAAKSEHNGAADARDGRFSRSKIGMSQDDLMVHVLANQA
HHQTYRRNVNGSIDDLRELKMP*

mRNA from alignment at NODE_297_length_31759_cov_4.165656:4712..5980+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1966.t1 ID=Gcaud1966.t1|Name=Gcaud1966.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:4712..5980+ (Gracilaria caudata M_176_S67 male)
atgcctaGAAACGGCGATGACAAGAGCTCGGTGCAACTTTCGCCCGCGCA
GTTCTTCAAGGACATGAAGGACATGATGCAGAAGAAGGCGGAGCAATCGT
CGCGGGCGCAGAGCGCGGGCTCGGGTGTGACGAAGAAGAGCTCGTCGTCC
ATGCCGGGAGCGCATGAGCTGCCGGTGGTGTCCAACCCGTTGCAACAACA
TGCGTCGCACGCGTCGATGCAAAACATGATGCGTCCTGCACAACGCATGC
TGCTGGCGGTTGCACAGTCGTCTGCGCATGCTCAGGCCGCGATGGCTGCG
TCGCACCCGTATGGCGCTTCGCAGTCCTCGTCGCTCACTGCTTTTGATGT
GGATGCGGCCACTTTTCAACTGGCGGGTACTAGGATTGATGAACCGCAGC
CGACGCATGGCGCGAGTAATAATCATACTGCTTCTTCGACGCTTGAAGAG
GAGGCGCTTGTGCGGTCGCCTTCGCAGGAGCTCATGGCGTCGAATATGAC
GCTGTCGGAGTCGGTGTCGCAGGGGCTGGACTTGCATTCGACGCATCTGT
CGTCCGATGCGGCGAATGCTAGGAAACAGCGCGCGGATGATATTGACAAG
GTGCTCAACAGCGCGGGCATGTCGGTTGGACTGTCCAACCATTGTAATGT
ATCTGCTACTACTACAAACCAGATGTTTGATGCGTCTCGCTTCAACAATG
GCAAGAACTCGGCGTCGGTGAGTCGCTCGTTTAGCTTTCTGTTCAAGAAT
AATGCGCCGTTCGCGTCGAGGGAGAACTCGATGGACTTTCGAAAGGGTGA
TCTGGGTGGAAAGCGTGACATGTCGATGGATATGATCCGAAGAGACATGT
CGATGGATTTACTGTGCGCGAGGAGAGTGGGCTCGCAGGAACCGATTGAC
GGCGAGCTTGTGCGTGACATGAGCGTGGACTTTTTTGGAAGCTCGTTACG
AAACGCCAACCGCGATTTTAGCATGGAGATGCAGTTCCCCACCGACTCGA
GCGGCGCGCAGTCTGGCGCGGTGTTCGAGCTGGGCGCGCTCACGGATGAC
GTGGTGTTTGGGCAACCGTTTCATAACTTGCACGCGGCTGCGAAGAGTGA
GCATAATGGCGCGGCTGATGCGCGTGACGGCAGGTTCTCGAGGTCAAAAA
TAGGAATGTCGCAAGACGACCTGATGGTGCATGTGTTGGCAAACCAGGCT
CATCACCAGACGTACCGACGCAATGTGAATGGAAGCATAGACGATCTCCG
CGAGCTCAAGATGCCGTAG

Coding sequence (CDS) from alignment at NODE_297_length_31759_cov_4.165656:4712..5980+

>Gcaud1966.t1 ID=Gcaud1966.t1|Name=Gcaud1966.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1269bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:4712..5980+ (Gracilaria caudata M_176_S67 male)
atgcctaGAAACGGCGATGACAAGAGCTCGGTGCAACTTTCGCCCGCGCA
GTTCTTCAAGGACATGAAGGACATGATGCAGAAGAAGGCGGAGCAATCGT
CGCGGGCGCAGAGCGCGGGCTCGGGTGTGACGAAGAAGAGCTCGTCGTCC
ATGCCGGGAGCGCATGAGCTGCCGGTGGTGTCCAACCCGTTGCAACAACA
TGCGTCGCACGCGTCGATGCAAAACATGATGCGTCCTGCACAACGCATGC
TGCTGGCGGTTGCACAGTCGTCTGCGCATGCTCAGGCCGCGATGGCTGCG
TCGCACCCGTATGGCGCTTCGCAGTCCTCGTCGCTCACTGCTTTTGATGT
GGATGCGGCCACTTTTCAACTGGCGGGTACTAGGATTGATGAACCGCAGC
CGACGCATGGCGCGAGTAATAATCATACTGCTTCTTCGACGCTTGAAGAG
GAGGCGCTTGTGCGGTCGCCTTCGCAGGAGCTCATGGCGTCGAATATGAC
GCTGTCGGAGTCGGTGTCGCAGGGGCTGGACTTGCATTCGACGCATCTGT
CGTCCGATGCGGCGAATGCTAGGAAACAGCGCGCGGATGATATTGACAAG
GTGCTCAACAGCGCGGGCATGTCGGTTGGACTGTCCAACCATTGTAATGT
ATCTGCTACTACTACAAACCAGATGTTTGATGCGTCTCGCTTCAACAATG
GCAAGAACTCGGCGTCGGTGAGTCGCTCGTTTAGCTTTCTGTTCAAGAAT
AATGCGCCGTTCGCGTCGAGGGAGAACTCGATGGACTTTCGAAAGGGTGA
TCTGGGTGGAAAGCGTGACATGTCGATGGATATGATCCGAAGAGACATGT
CGATGGATTTACTGTGCGCGAGGAGAGTGGGCTCGCAGGAACCGATTGAC
GGCGAGCTTGTGCGTGACATGAGCGTGGACTTTTTTGGAAGCTCGTTACG
AAACGCCAACCGCGATTTTAGCATGGAGATGCAGTTCCCCACCGACTCGA
GCGGCGCGCAGTCTGGCGCGGTGTTCGAGCTGGGCGCGCTCACGGATGAC
GTGGTGTTTGGGCAACCGTTTCATAACTTGCACGCGGCTGCGAAGAGTGA
GCATAATGGCGCGGCTGATGCGCGTGACGGCAGGTTCTCGAGGTCAAAAA
TAGGAATGTCGCAAGACGACCTGATGGTGCATGTGTTGGCAAACCAGGCT
CATCACCAGACGTACCGACGCAATGTGAATGGAAGCATAGACGATCTCCG
CGAGCTCAAGATGCCGTAG