Gcaud1962.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1962.t1
Unique NameGcaud1962.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_802_length_17758_cov_4.100526contigNODE_802_length_17758_cov_4.100526:9955..10797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703102.1
Preferred nameHUS1
PFAMsHus1
Max annot lvl2759|Eukaryota
KEGG koko:K02870,ko:K10903,ko:K10996
KEGG Pathwayko03010,ko04218,map03010,map04218
KEGG ModuleM00177
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000723,GO:0000724,GO:0000725,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0001932,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0007049,GO:0007093,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007338,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0009314,GO:0009411,GO:0009416,GO:0009566,GO:0009628,GO:0009653,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010212,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0010972,GO:0016043,GO:0016310,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030717,GO:0030720,GO:0030896,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033313,GO:0033314,GO:0033554,GO:0034641,GO:0035038,GO:0035861,GO:0036211,GO:0040020,GO:0042325,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044778,GO:0044818,GO:0045786,GO:0045835,GO:0045930,GO:0045934,GO:0046483,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051246,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070193,GO:0070194,GO:0070925,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090734,GO:0104004,GO:1901360,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000112,GO:2000113,GO:2000241,GO:2000242
Evalue2.04e-29
EggNOG OGsKOG3999@1|root,KOG3999@2759|Eukaryota
Descriptionmeiotic DNA integrity checkpoint
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1962Gcaud1962Gracilaria caudata M_176_S67 malegeneNODE_802_length_17758_cov_4.100526 9955..10797 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1962.t1.start1Gcaud1962.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_802_length_17758_cov_4.100526 9955..9957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1962.t1.CDS1Gcaud1962.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_802_length_17758_cov_4.100526 9955..10797 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1962.t1.exon1Gcaud1962.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_802_length_17758_cov_4.100526 9955..10797 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1962.t1.stop1Gcaud1962.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_802_length_17758_cov_4.100526 10795..10797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1962.t1Gcaud1962.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_802_length_17758_cov_4.100526 9955..10797 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1962.t1 ID=Gcaud1962.t1|Name=Gcaud1962.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=281bp
MRFKGRLKPERVADFLRVAQLLDKVGKRCVLHLSAPEVENIRIVFQADVS
GSVAAYAHFTRTEWFLSYRIESQNANQIGLEMDMQNLLRALRSASAADHI
LVKLAKKGVPVLTFEMITALGPIMQDIPVVVLSAIRLSEYQPPDHDRTKG
FALPPLTKIHTLVDRMKVLCNSLCLKATLYEDRAKLLLGIDTDTASVSAT
FTDLSIASYEDDESMQEQRGTPAPEQEAVVDLRNFSRCLFGHQAQPLHAT
CFIHPHYVMVHLTVSADVSISYYIPRKFAP*
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spliced messenger RNA

>Gcaud1962.t1 ID=Gcaud1962.t1|Name=Gcaud1962.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:9955..10797+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGATTTAAGGGTCGTCTGAAGCCAGAGCGAGTGGCTGATTTCTTAAG
AGTAGCCCAGCTTTTGGACAAGGTTGGAAAGAGATGTGTGTTGCACCTCA
GCGCACCTGAAGTTGAAAACATTCGAATCGTATTCCAAGCAGATGTTTCT
GGCTCTGTAGCAGCTTACGCCCATTTCACGAGAACAGAGTGGTTTCTGTC
ATACAGGATCGAGTCTCAAAATGCGAACCAAATCGGGCTTGAGATGGACA
TGCAAAATCTACTTCGTGCTTTGCGCTCTGCATCTGCCGCAGACCACATA
CTCGTCAAGCTGGCAAAAAAGGGAGTTCCGGTTCTAACATTTGAGATGAT
TACGGCTCTGGGGCCTATTATGCAGGACATCCCAGTGGTAGTTTTATCCG
CAATACGGCTTTCTGAATATCAACCACCGGATCATGATAGGACCAAAGGT
TTTGCATTGCCGCCACTAACTAAGATTCACACTCTTGTCGACCGCATGAA
AGTACTGTGCAATTCTCTTTGCTTGAAAGCTACGTTGTACGAGGATAGAG
CCAAGCTTCTGCTTGGAATCGACACAGACACGGCCTCCGTTTCTGCGACG
TTTACGGATCTTTCTATTGCAAGCTACGAAGATGACGAATCTATGCAAGA
GCAACGAGGAACGCCTGCCCCTGAGCAAGAAGCAGTCGTAGACCTGCGCA
ACTTTAGTAGATGTTTGTTTGGTCATCAAGCACAGCCACTACACGCAACG
TGCTTCATTCACCCACACTACGTCATGGTGCATTTGACAGTTTCCGCCGA
TGTGAGCATATCGTACTACATTCCTCGTAAGTTCGCCCCTTAG
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protein sequence of Gcaud1962.t1

>Gcaud1962.t1 ID=Gcaud1962.t1|Name=Gcaud1962.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=281bp
MRFKGRLKPERVADFLRVAQLLDKVGKRCVLHLSAPEVENIRIVFQADVS
GSVAAYAHFTRTEWFLSYRIESQNANQIGLEMDMQNLLRALRSASAADHI
LVKLAKKGVPVLTFEMITALGPIMQDIPVVVLSAIRLSEYQPPDHDRTKG
FALPPLTKIHTLVDRMKVLCNSLCLKATLYEDRAKLLLGIDTDTASVSAT
FTDLSIASYEDDESMQEQRGTPAPEQEAVVDLRNFSRCLFGHQAQPLHAT
CFIHPHYVMVHLTVSADVSISYYIPRKFAP*
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mRNA from alignment at NODE_802_length_17758_cov_4.100526:9955..10797+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1962.t1 ID=Gcaud1962.t1|Name=Gcaud1962.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:9955..10797+ (Gracilaria caudata M_176_S67 male)
ATGAGATTTAAGGGTCGTCTGAAGCCAGAGCGAGTGGCTGATTTCTTAAG
AGTAGCCCAGCTTTTGGACAAGGTTGGAAAGAGATGTGTGTTGCACCTCA
GCGCACCTGAAGTTGAAAACATTCGAATCGTATTCCAAGCAGATGTTTCT
GGCTCTGTAGCAGCTTACGCCCATTTCACGAGAACAGAGTGGTTTCTGTC
ATACAGGATCGAGTCTCAAAATGCGAACCAAATCGGGCTTGAGATGGACA
TGCAAAATCTACTTCGTGCTTTGCGCTCTGCATCTGCCGCAGACCACATA
CTCGTCAAGCTGGCAAAAAAGGGAGTTCCGGTTCTAACATTTGAGATGAT
TACGGCTCTGGGGCCTATTATGCAGGACATCCCAGTGGTAGTTTTATCCG
CAATACGGCTTTCTGAATATCAACCACCGGATCATGATAGGACCAAAGGT
TTTGCATTGCCGCCACTAACTAAGATTCACACTCTTGTCGACCGCATGAA
AGTACTGTGCAATTCTCTTTGCTTGAAAGCTACGTTGTACGAGGATAGAG
CCAAGCTTCTGCTTGGAATCGACACAGACACGGCCTCCGTTTCTGCGACG
TTTACGGATCTTTCTATTGCAAGCTACGAAGATGACGAATCTATGCAAGA
GCAACGAGGAACGCCTGCCCCTGAGCAAGAAGCAGTCGTAGACCTGCGCA
ACTTTAGTAGATGTTTGTTTGGTCATCAAGCACAGCCACTACACGCAACG
TGCTTCATTCACCCACACTACGTCATGGTGCATTTGACAGTTTCCGCCGA
TGTGAGCATATCGTACTACATTCCTCGTAAGTTCGCCCCTTAG
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Coding sequence (CDS) from alignment at NODE_802_length_17758_cov_4.100526:9955..10797+

>Gcaud1962.t1 ID=Gcaud1962.t1|Name=Gcaud1962.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=843bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:9955..10797+ (Gracilaria caudata M_176_S67 male)
ATGAGATTTAAGGGTCGTCTGAAGCCAGAGCGAGTGGCTGATTTCTTAAG
AGTAGCCCAGCTTTTGGACAAGGTTGGAAAGAGATGTGTGTTGCACCTCA
GCGCACCTGAAGTTGAAAACATTCGAATCGTATTCCAAGCAGATGTTTCT
GGCTCTGTAGCAGCTTACGCCCATTTCACGAGAACAGAGTGGTTTCTGTC
ATACAGGATCGAGTCTCAAAATGCGAACCAAATCGGGCTTGAGATGGACA
TGCAAAATCTACTTCGTGCTTTGCGCTCTGCATCTGCCGCAGACCACATA
CTCGTCAAGCTGGCAAAAAAGGGAGTTCCGGTTCTAACATTTGAGATGAT
TACGGCTCTGGGGCCTATTATGCAGGACATCCCAGTGGTAGTTTTATCCG
CAATACGGCTTTCTGAATATCAACCACCGGATCATGATAGGACCAAAGGT
TTTGCATTGCCGCCACTAACTAAGATTCACACTCTTGTCGACCGCATGAA
AGTACTGTGCAATTCTCTTTGCTTGAAAGCTACGTTGTACGAGGATAGAG
CCAAGCTTCTGCTTGGAATCGACACAGACACGGCCTCCGTTTCTGCGACG
TTTACGGATCTTTCTATTGCAAGCTACGAAGATGACGAATCTATGCAAGA
GCAACGAGGAACGCCTGCCCCTGAGCAAGAAGCAGTCGTAGACCTGCGCA
ACTTTAGTAGATGTTTGTTTGGTCATCAAGCACAGCCACTACACGCAACG
TGCTTCATTCACCCACACTACGTCATGGTGCATTTGACAGTTTCCGCCGA
TGTGAGCATATCGTACTACATTCCTCGTAAGTTCGCCCCTTAG
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