Gcaud196.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud196.t1
Unique Name	Gcaud196.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	576

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1222_length_12421_cov_10.218491	contig	NODE_1222_length_12421_cov_10.218491:789..2516 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud196	Gcaud196	Gracilaria caudata M_176_S67 male	gene	NODE_1222_length_12421_cov_10.218491 789..2516 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud196.t1.stop1	Gcaud196.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1222_length_12421_cov_10.218491 789..791 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud196.t1.CDS1	Gcaud196.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1222_length_12421_cov_10.218491 789..2516 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud196.t1.exon1	Gcaud196.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1222_length_12421_cov_10.218491 789..2516 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud196.t1.start1	Gcaud196.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1222_length_12421_cov_10.218491 2514..2516 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud196.t1	Gcaud196.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1222_length_12421_cov_10.218491 789..2516 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1222_length_12421_cov_10.218491:789..2516-
coding sequence from alignment at NODE_1222_length_12421_cov_10.218491:789..2516-

mRNA sequence

>Gcaud196.t1 ID=Gcaud196.t1|Name=Gcaud196.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=576bp
MEKLSLIPATDSEPEEGSVAHEDLFGNETESVDEFPLSQVPVSHVVDSVE
HAQPEQATENRDKRSRLKRLLLEQRKRLPQVSQEPVPIFRSKRRRALPNS
EPHSLSKEEAWRKMVDRMLILDGTFFDSPEARLEVNEAKKRGKVVYSGLN
VFSSNCYDIETIYDMRYRSRVLFTKKKSQPFECLRSTAGQFLRFLISLGL
LDRKDGYKEKALFGSLADYDAVEYFMNHFNLTSSPYTVASKCTHLTTIIS
VAQIVLHNDADVAAKLKFNAEYLRNLAASSKRAARQKRRQQRLMEISLDN
QNLLLDEDMRKAYSIARHKLRGIVETYRLDEAEKDGSFLSRLESNGDLVH
KWCLNFLAAVVFSCGGQRPKAIASLQVPSRRELNRVETTPIGNFLSLRSN
LDKRERNLNYPVVTFPASMKQFLEFHTNIIRPYMKKKLKFVDKEGDARLL
VHSRDGVPFRSRNVTTSIRTFMTNIDRKFKFVTTMTVRGSYATSMMHSFR
LGKVGKDVSQAKFMDALASRMNTSPEQLTDAYIQIVRTDYESAVQLAMEH
FVITMEENDDDDDDDDDNERKCAKK*

spliced messenger RNA

>Gcaud196.t1 ID=Gcaud196.t1|Name=Gcaud196.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1728bp|location=Sequence derived from alignment at NODE_1222_length_12421_cov_10.218491:789..2516- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAGCTTTCCCTCATCCCTGCGACGGATTCAGAGCCTGAAGAAGG
CTCTGTTGCGCATGAAGACCTTTTTGGCAATGAGACAGAAAGCGTAGACG
AATTTCCACTCAGCCAAGTACCTGTTTCTCACGTGGTAGACTCTGTCGAA
CATGCTCAACCAGAACAAGCCACCGAGAATAGAGATAAGCGCTCCCGACT
TAAGCGCTTGCTTCTTGAGCAGAGAAAGCGTCTTCCTCAGGTATCTCAGG
AACCAGTTCCCATTTTCAGATCCAAGCGACGCAGAGCGCTGCCGAACAGT
GAGCCTCATTCCTTGTCGAAAGAAGAAGCGTGGAGGAAAATGGTGGATCG
CATGCTCATCTTGGACGGAACTTTCTTCGACAGCCCTGAAGCTCGACTAG
AAGTCAATGAAGCAAAGAAGCGTGGTAAGGTCGTGTATAGCGGTCTGAAC
GTCTTTTCGTCGAACTGCTACGATATTGAAACGATCTACGATATGAGATA
TCGTTCCCGAGTGTTGTTTACGAAGAAGAAGTCACAACCTTTCGAATGTC
TTCGGTCGACGGCTGGTCAGTTTCTAAGGTTTCTGATTTCGTTGGGATTG
CTGGATCGAAAGGATGGGTACAAGGAGAAAGCTCTATTTGGTTCATTGGC
AGATTATGACGCGGTGGAGTACTTTATGAACCATTTCAATCTCACCTCTT
CTCCGTACACTGTGGCGTCCAAATGTACGCATTTGACTACAATCATCTCT
GTTGCGCAAATAGTCCTTCATAACGACGCGGATGTTGCAGCAAAACTCAA
GTTCAACGCGGAGTACCTAAGGAATCTTGCTGCCTCTTCGAAACGTGCCG
CTCGACAGAAGCGTCGACAACAACGGTTGATGGAGATTAGTTTGGATAAT
CAGAATCTGCTTCTCGATGAGGACATGCGCAAGGCCTATTCTATTGCACG
TCACAAGTTGCGGGGAATTGTCGAGACCTACCGCTTGGATGAAGCCGAGA
AGGATGGCTCCTTTTTGTCAAGGCTTGAATCGAATGGGGATCTTGTCCAC
AAGTGGTGCCTTAACTTCTTGGCGGCAGTCGTTTTTTCCTGCGGAGGACA
GCGGCCGAAAGCTATTGCTTCACTGCAGGTGCCATCAAGGCGAGAACTAA
ATCGCGTGGAGACCACCCCGATCGGAAATTTCCTTAGCTTGCGATCAAAC
TTGGACAAAAGGGAAAGGAATTTGAACTATCCGGTTGTCACCTTTCCGGC
CTCTATGAAGCAGTTTCTTGAGTTTCATACGAATATCATTCGCCCATATA
TGAAGAAGAAGTTGAAATTCGTTGACAAGGAAGGTGATGCTCGTCTACTT
GTTCACTCTCGCGATGGAGTACCTTTCAGGTCCCGAAACGTCACGACTTC
AATAAGAACTTTTATGACGAACATAGATAGGAAGTTCAAGTTTGTCACCA
CAATGACGGTAAGAGGAAGCTATGCCACTTCTATGATGCATTCATTTCGG
CTGGGGAAAGTGGGGAAAGACGTATCTCAGGCGAAGTTTATGGACGCACT
GGCGAGCCGTATGAACACAAGTCCAGAACAGTTGACAGATGCCTACATTC
AGATTGTGAGAACAGACTACGAGAGTGCAGTGCAGCTAGCAATGGAGCAC
TTTGTTATCACTATGGAGGAAAACGATGATGATGATGATGATGATGATGA
TAATGAGCGTAAGTGTGCTAAGAAGTAG

protein sequence of Gcaud196.t1

>Gcaud196.t1 ID=Gcaud196.t1|Name=Gcaud196.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=576bp
MEKLSLIPATDSEPEEGSVAHEDLFGNETESVDEFPLSQVPVSHVVDSVE
HAQPEQATENRDKRSRLKRLLLEQRKRLPQVSQEPVPIFRSKRRRALPNS
EPHSLSKEEAWRKMVDRMLILDGTFFDSPEARLEVNEAKKRGKVVYSGLN
VFSSNCYDIETIYDMRYRSRVLFTKKKSQPFECLRSTAGQFLRFLISLGL
LDRKDGYKEKALFGSLADYDAVEYFMNHFNLTSSPYTVASKCTHLTTIIS
VAQIVLHNDADVAAKLKFNAEYLRNLAASSKRAARQKRRQQRLMEISLDN
QNLLLDEDMRKAYSIARHKLRGIVETYRLDEAEKDGSFLSRLESNGDLVH
KWCLNFLAAVVFSCGGQRPKAIASLQVPSRRELNRVETTPIGNFLSLRSN
LDKRERNLNYPVVTFPASMKQFLEFHTNIIRPYMKKKLKFVDKEGDARLL
VHSRDGVPFRSRNVTTSIRTFMTNIDRKFKFVTTMTVRGSYATSMMHSFR
LGKVGKDVSQAKFMDALASRMNTSPEQLTDAYIQIVRTDYESAVQLAMEH
FVITMEENDDDDDDDDDNERKCAKK*

mRNA from alignment at NODE_1222_length_12421_cov_10.218491:789..2516-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud196.t1 ID=Gcaud196.t1|Name=Gcaud196.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1728bp|location=Sequence derived from alignment at NODE_1222_length_12421_cov_10.218491:789..2516- (Gracilaria caudata M_176_S67 male)
ATGGAGAAGCTTTCCCTCATCCCTGCGACGGATTCAGAGCCTGAAGAAGG
CTCTGTTGCGCATGAAGACCTTTTTGGCAATGAGACAGAAAGCGTAGACG
AATTTCCACTCAGCCAAGTACCTGTTTCTCACGTGGTAGACTCTGTCGAA
CATGCTCAACCAGAACAAGCCACCGAGAATAGAGATAAGCGCTCCCGACT
TAAGCGCTTGCTTCTTGAGCAGAGAAAGCGTCTTCCTCAGGTATCTCAGG
AACCAGTTCCCATTTTCAGATCCAAGCGACGCAGAGCGCTGCCGAACAGT
GAGCCTCATTCCTTGTCGAAAGAAGAAGCGTGGAGGAAAATGGTGGATCG
CATGCTCATCTTGGACGGAACTTTCTTCGACAGCCCTGAAGCTCGACTAG
AAGTCAATGAAGCAAAGAAGCGTGGTAAGGTCGTGTATAGCGGTCTGAAC
GTCTTTTCGTCGAACTGCTACGATATTGAAACGATCTACGATATGAGATA
TCGTTCCCGAGTGTTGTTTACGAAGAAGAAGTCACAACCTTTCGAATGTC
TTCGGTCGACGGCTGGTCAGTTTCTAAGGTTTCTGATTTCGTTGGGATTG
CTGGATCGAAAGGATGGGTACAAGGAGAAAGCTCTATTTGGTTCATTGGC
AGATTATGACGCGGTGGAGTACTTTATGAACCATTTCAATCTCACCTCTT
CTCCGTACACTGTGGCGTCCAAATGTACGCATTTGACTACAATCATCTCT
GTTGCGCAAATAGTCCTTCATAACGACGCGGATGTTGCAGCAAAACTCAA
GTTCAACGCGGAGTACCTAAGGAATCTTGCTGCCTCTTCGAAACGTGCCG
CTCGACAGAAGCGTCGACAACAACGGTTGATGGAGATTAGTTTGGATAAT
CAGAATCTGCTTCTCGATGAGGACATGCGCAAGGCCTATTCTATTGCACG
TCACAAGTTGCGGGGAATTGTCGAGACCTACCGCTTGGATGAAGCCGAGA
AGGATGGCTCCTTTTTGTCAAGGCTTGAATCGAATGGGGATCTTGTCCAC
AAGTGGTGCCTTAACTTCTTGGCGGCAGTCGTTTTTTCCTGCGGAGGACA
GCGGCCGAAAGCTATTGCTTCACTGCAGGTGCCATCAAGGCGAGAACTAA
ATCGCGTGGAGACCACCCCGATCGGAAATTTCCTTAGCTTGCGATCAAAC
TTGGACAAAAGGGAAAGGAATTTGAACTATCCGGTTGTCACCTTTCCGGC
CTCTATGAAGCAGTTTCTTGAGTTTCATACGAATATCATTCGCCCATATA
TGAAGAAGAAGTTGAAATTCGTTGACAAGGAAGGTGATGCTCGTCTACTT
GTTCACTCTCGCGATGGAGTACCTTTCAGGTCCCGAAACGTCACGACTTC
AATAAGAACTTTTATGACGAACATAGATAGGAAGTTCAAGTTTGTCACCA
CAATGACGGTAAGAGGAAGCTATGCCACTTCTATGATGCATTCATTTCGG
CTGGGGAAAGTGGGGAAAGACGTATCTCAGGCGAAGTTTATGGACGCACT
GGCGAGCCGTATGAACACAAGTCCAGAACAGTTGACAGATGCCTACATTC
AGATTGTGAGAACAGACTACGAGAGTGCAGTGCAGCTAGCAATGGAGCAC
TTTGTTATCACTATGGAGGAAAACGATGATGATGATGATGATGATGATGA
TAATGAGCGTAAGTGTGCTAAGAAGTAG

Coding sequence (CDS) from alignment at NODE_1222_length_12421_cov_10.218491:789..2516-

>Gcaud196.t1 ID=Gcaud196.t1|Name=Gcaud196.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1728bp|location=Sequence derived from alignment at NODE_1222_length_12421_cov_10.218491:789..2516- (Gracilaria caudata M_176_S67 male)
ATGGAGAAGCTTTCCCTCATCCCTGCGACGGATTCAGAGCCTGAAGAAGG
CTCTGTTGCGCATGAAGACCTTTTTGGCAATGAGACAGAAAGCGTAGACG
AATTTCCACTCAGCCAAGTACCTGTTTCTCACGTGGTAGACTCTGTCGAA
CATGCTCAACCAGAACAAGCCACCGAGAATAGAGATAAGCGCTCCCGACT
TAAGCGCTTGCTTCTTGAGCAGAGAAAGCGTCTTCCTCAGGTATCTCAGG
AACCAGTTCCCATTTTCAGATCCAAGCGACGCAGAGCGCTGCCGAACAGT
GAGCCTCATTCCTTGTCGAAAGAAGAAGCGTGGAGGAAAATGGTGGATCG
CATGCTCATCTTGGACGGAACTTTCTTCGACAGCCCTGAAGCTCGACTAG
AAGTCAATGAAGCAAAGAAGCGTGGTAAGGTCGTGTATAGCGGTCTGAAC
GTCTTTTCGTCGAACTGCTACGATATTGAAACGATCTACGATATGAGATA
TCGTTCCCGAGTGTTGTTTACGAAGAAGAAGTCACAACCTTTCGAATGTC
TTCGGTCGACGGCTGGTCAGTTTCTAAGGTTTCTGATTTCGTTGGGATTG
CTGGATCGAAAGGATGGGTACAAGGAGAAAGCTCTATTTGGTTCATTGGC
AGATTATGACGCGGTGGAGTACTTTATGAACCATTTCAATCTCACCTCTT
CTCCGTACACTGTGGCGTCCAAATGTACGCATTTGACTACAATCATCTCT
GTTGCGCAAATAGTCCTTCATAACGACGCGGATGTTGCAGCAAAACTCAA
GTTCAACGCGGAGTACCTAAGGAATCTTGCTGCCTCTTCGAAACGTGCCG
CTCGACAGAAGCGTCGACAACAACGGTTGATGGAGATTAGTTTGGATAAT
CAGAATCTGCTTCTCGATGAGGACATGCGCAAGGCCTATTCTATTGCACG
TCACAAGTTGCGGGGAATTGTCGAGACCTACCGCTTGGATGAAGCCGAGA
AGGATGGCTCCTTTTTGTCAAGGCTTGAATCGAATGGGGATCTTGTCCAC
AAGTGGTGCCTTAACTTCTTGGCGGCAGTCGTTTTTTCCTGCGGAGGACA
GCGGCCGAAAGCTATTGCTTCACTGCAGGTGCCATCAAGGCGAGAACTAA
ATCGCGTGGAGACCACCCCGATCGGAAATTTCCTTAGCTTGCGATCAAAC
TTGGACAAAAGGGAAAGGAATTTGAACTATCCGGTTGTCACCTTTCCGGC
CTCTATGAAGCAGTTTCTTGAGTTTCATACGAATATCATTCGCCCATATA
TGAAGAAGAAGTTGAAATTCGTTGACAAGGAAGGTGATGCTCGTCTACTT
GTTCACTCTCGCGATGGAGTACCTTTCAGGTCCCGAAACGTCACGACTTC
AATAAGAACTTTTATGACGAACATAGATAGGAAGTTCAAGTTTGTCACCA
CAATGACGGTAAGAGGAAGCTATGCCACTTCTATGATGCATTCATTTCGG
CTGGGGAAAGTGGGGAAAGACGTATCTCAGGCGAAGTTTATGGACGCACT
GGCGAGCCGTATGAACACAAGTCCAGAACAGTTGACAGATGCCTACATTC
AGATTGTGAGAACAGACTACGAGAGTGCAGTGCAGCTAGCAATGGAGCAC
TTTGTTATCACTATGGAGGAAAACGATGATGATGATGATGATGATGATGA
TAATGAGCGTAAGTGTGCTAAGAAGTAG