Gcaud1958.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1958.t1
Unique Name	Gcaud1958.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	366

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3195_length_3856_cov_4.767596	contig	NODE_3195_length_3856_cov_4.767596:2419..3516 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1958	Gcaud1958	Gracilaria caudata M_176_S67 male	gene	NODE_3195_length_3856_cov_4.767596 2419..3516 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1958.t1.stop1	Gcaud1958.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3195_length_3856_cov_4.767596 2419..2421 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1958.t1.CDS1	Gcaud1958.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3195_length_3856_cov_4.767596 2419..3516 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1958.t1.exon1	Gcaud1958.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3195_length_3856_cov_4.767596 2419..3516 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1958.t1.start1	Gcaud1958.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3195_length_3856_cov_4.767596 3514..3516 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1958.t1	Gcaud1958.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3195_length_3856_cov_4.767596 2419..3516 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3195_length_3856_cov_4.767596:2419..3516-
coding sequence from alignment at NODE_3195_length_3856_cov_4.767596:2419..3516-

mRNA sequence

>Gcaud1958.t1 ID=Gcaud1958.t1|Name=Gcaud1958.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=366bp
LITTALIGLSESNSFRVSRNHTVPGDSLCRTKGFSISPHSRLGEASDRVK
LHFESGGNVLSVGRTGRNADALIVEDEQFSLGSTVVVDEFNVSIPMNISI
SSVHPRLEYDDASLHARPDLMWSYDFSVENWTISGIDKQIVKGPLYIMYS
ESDGGNDPYEGYTFARCTLPRLELQIDESKEFISDCTAANLQRSDEIDEG
WATLTENHLPLRDMVKTYQGLNMSELGKRSLMVFDVAKSLGRDSCGNSYV
AYLPSSEISRTSVIIICALGGITLLNLVAAALSLLITRGTFNWNGSYQRV
INLVSNSDSIEQKSCWKISSAPKVDVVVEPAHGHLDSTTYDVHAIPREAA
SNPVPKANVNSINKQ*

spliced messenger RNA

>Gcaud1958.t1 ID=Gcaud1958.t1|Name=Gcaud1958.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at NODE_3195_length_3856_cov_4.767596:2419..3516- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGATCACTACTGCTCTAATTGGGTTATCAGAGTCAAACAGTTTTCGTGT
GAGTCGGAATCACACAGTGCCAGGAGATTCACTATGTCGCACGAAAGGTT
TTTCTATTTCCCCCCATAGTCGATTAGGAGAAGCAAGCGATAGAGTTAAA
TTGCACTTTGAATCAGGTGGAAATGTTCTAAGCGTAGGCAGGACAGGTAG
GAATGCTGATGCACTCATAGTCGAAGACGAACAGTTCAGCCTGGGCTCTA
CAGTGGTAGTGGACGAATTCAATGTTTCCATTCCTATGAATATTTCAATC
TCTTCAGTCCATCCACGTCTTGAATACGACGACGCTTCATTGCATGCCCG
GCCTGACCTTATGTGGAGTTATGATTTTTCCGTCGAGAATTGGACAATTT
CGGGAATCGACAAACAAATCGTAAAAGGTCCATTGTATATCATGTACTCG
GAGTCGGATGGAGGAAATGATCCTTATGAGGGGTACACATTCGCCAGGTG
CACTTTACCTCGACTGGAATTGCAGATCGACGAATCAAAAGAGTTCATCA
GTGATTGTACAGCGGCAAACCTCCAAAGAAGTGATGAAATAGATGAAGGC
TGGGCGACTCTTACGGAAAACCATCTTCCCTTGAGAGATATGGTTAAGAC
GTACCAGGGATTAAATATGTCAGAACTGGGGAAAAGGTCACTTATGGTGT
TTGATGTGGCAAAATCTCTGGGTCGAGATTCATGTGGAAATTCATATGTG
GCATACCTTCCATCGTCCGAGATCTCCAGAACCTCAGTCATCATTATCTG
CGCTCTCGGTGGCATTACGTTGCTGAATCTGGTAGCAGCGGCGTTGTCAC
TTTTGATCACAAGAGGAACGTTCAATTGGAATGGGTCTTACCAAAGAGTG
ATTAATCTTGTGTCGAATTCAGATTCGATTGAACAAAAGAGCTGCTGGAA
AATAAGTAGTGCTCCCAAAGTGGACGTCGTTGTCGAGCCTGCACATGGAC
ACTTAGACAGCACGACATACGATGTGCACGCGATTCCAAGAGAGGCTGCA
TCAAACCCAGTGCCAAAAGCAAATGTGAATTCGATCAATAAGCAATGA

protein sequence of Gcaud1958.t1

>Gcaud1958.t1 ID=Gcaud1958.t1|Name=Gcaud1958.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=366bp
LITTALIGLSESNSFRVSRNHTVPGDSLCRTKGFSISPHSRLGEASDRVK
LHFESGGNVLSVGRTGRNADALIVEDEQFSLGSTVVVDEFNVSIPMNISI
SSVHPRLEYDDASLHARPDLMWSYDFSVENWTISGIDKQIVKGPLYIMYS
ESDGGNDPYEGYTFARCTLPRLELQIDESKEFISDCTAANLQRSDEIDEG
WATLTENHLPLRDMVKTYQGLNMSELGKRSLMVFDVAKSLGRDSCGNSYV
AYLPSSEISRTSVIIICALGGITLLNLVAAALSLLITRGTFNWNGSYQRV
INLVSNSDSIEQKSCWKISSAPKVDVVVEPAHGHLDSTTYDVHAIPREAA
SNPVPKANVNSINKQ*

mRNA from alignment at NODE_3195_length_3856_cov_4.767596:2419..3516-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1958.t1 ID=Gcaud1958.t1|Name=Gcaud1958.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at NODE_3195_length_3856_cov_4.767596:2419..3516- (Gracilaria caudata M_176_S67 male)
CTGATCACTACTGCTCTAATTGGGTTATCAGAGTCAAACAGTTTTCGTGT
GAGTCGGAATCACACAGTGCCAGGAGATTCACTATGTCGCACGAAAGGTT
TTTCTATTTCCCCCCATAGTCGATTAGGAGAAGCAAGCGATAGAGTTAAA
TTGCACTTTGAATCAGGTGGAAATGTTCTAAGCGTAGGCAGGACAGGTAG
GAATGCTGATGCACTCATAGTCGAAGACGAACAGTTCAGCCTGGGCTCTA
CAGTGGTAGTGGACGAATTCAATGTTTCCATTCCTATGAATATTTCAATC
TCTTCAGTCCATCCACGTCTTGAATACGACGACGCTTCATTGCATGCCCG
GCCTGACCTTATGTGGAGTTATGATTTTTCCGTCGAGAATTGGACAATTT
CGGGAATCGACAAACAAATCGTAAAAGGTCCATTGTATATCATGTACTCG
GAGTCGGATGGAGGAAATGATCCTTATGAGGGGTACACATTCGCCAGGTG
CACTTTACCTCGACTGGAATTGCAGATCGACGAATCAAAAGAGTTCATCA
GTGATTGTACAGCGGCAAACCTCCAAAGAAGTGATGAAATAGATGAAGGC
TGGGCGACTCTTACGGAAAACCATCTTCCCTTGAGAGATATGGTTAAGAC
GTACCAGGGATTAAATATGTCAGAACTGGGGAAAAGGTCACTTATGGTGT
TTGATGTGGCAAAATCTCTGGGTCGAGATTCATGTGGAAATTCATATGTG
GCATACCTTCCATCGTCCGAGATCTCCAGAACCTCAGTCATCATTATCTG
CGCTCTCGGTGGCATTACGTTGCTGAATCTGGTAGCAGCGGCGTTGTCAC
TTTTGATCACAAGAGGAACGTTCAATTGGAATGGGTCTTACCAAAGAGTG
ATTAATCTTGTGTCGAATTCAGATTCGATTGAACAAAAGAGCTGCTGGAA
AATAAGTAGTGCTCCCAAAGTGGACGTCGTTGTCGAGCCTGCACATGGAC
ACTTAGACAGCACGACATACGATGTGCACGCGATTCCAAGAGAGGCTGCA
TCAAACCCAGTGCCAAAAGCAAATGTGAATTCGATCAATAAGCAATGA

Coding sequence (CDS) from alignment at NODE_3195_length_3856_cov_4.767596:2419..3516-

>Gcaud1958.t1 ID=Gcaud1958.t1|Name=Gcaud1958.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1098bp|location=Sequence derived from alignment at NODE_3195_length_3856_cov_4.767596:2419..3516- (Gracilaria caudata M_176_S67 male)
CTGATCACTACTGCTCTAATTGGGTTATCAGAGTCAAACAGTTTTCGTGT
GAGTCGGAATCACACAGTGCCAGGAGATTCACTATGTCGCACGAAAGGTT
TTTCTATTTCCCCCCATAGTCGATTAGGAGAAGCAAGCGATAGAGTTAAA
TTGCACTTTGAATCAGGTGGAAATGTTCTAAGCGTAGGCAGGACAGGTAG
GAATGCTGATGCACTCATAGTCGAAGACGAACAGTTCAGCCTGGGCTCTA
CAGTGGTAGTGGACGAATTCAATGTTTCCATTCCTATGAATATTTCAATC
TCTTCAGTCCATCCACGTCTTGAATACGACGACGCTTCATTGCATGCCCG
GCCTGACCTTATGTGGAGTTATGATTTTTCCGTCGAGAATTGGACAATTT
CGGGAATCGACAAACAAATCGTAAAAGGTCCATTGTATATCATGTACTCG
GAGTCGGATGGAGGAAATGATCCTTATGAGGGGTACACATTCGCCAGGTG
CACTTTACCTCGACTGGAATTGCAGATCGACGAATCAAAAGAGTTCATCA
GTGATTGTACAGCGGCAAACCTCCAAAGAAGTGATGAAATAGATGAAGGC
TGGGCGACTCTTACGGAAAACCATCTTCCCTTGAGAGATATGGTTAAGAC
GTACCAGGGATTAAATATGTCAGAACTGGGGAAAAGGTCACTTATGGTGT
TTGATGTGGCAAAATCTCTGGGTCGAGATTCATGTGGAAATTCATATGTG
GCATACCTTCCATCGTCCGAGATCTCCAGAACCTCAGTCATCATTATCTG
CGCTCTCGGTGGCATTACGTTGCTGAATCTGGTAGCAGCGGCGTTGTCAC
TTTTGATCACAAGAGGAACGTTCAATTGGAATGGGTCTTACCAAAGAGTG
ATTAATCTTGTGTCGAATTCAGATTCGATTGAACAAAAGAGCTGCTGGAA
AATAAGTAGTGCTCCCAAAGTGGACGTCGTTGTCGAGCCTGCACATGGAC
ACTTAGACAGCACGACATACGATGTGCACGCGATTCCAAGAGAGGCTGCA
TCAAACCCAGTGCCAAAAGCAAATGTGAATTCGATCAATAAGCAATGA