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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7955.ENSDARP00000017065 |
| Preferred name | YBEY |
| PFAMs | UPF0054 |
| Max annot lvl | 33208|Metazoa |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464 |
| Evalue | 3.86e-16 |
| EggNOG OGs | COG0319@1|root,2R6QZ@2759|Eukaryota,39SQ4@33154|Opisthokonta,3BNIH@33208|Metazoa,3D1BN@33213|Bilateria,481IS@7711|Chordata,497IB@7742|Vertebrata,49U80@7898|Actinopterygii |
| Description | ybeY metallopeptidase |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1956.t1.stop1 | Gcaud1956.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1304_length_11589_cov_5.861106 4847..4849 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1956.t1.start1 | Gcaud1956.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1304_length_11589_cov_5.861106 5910..5912 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1956.t1 ID=Gcaud1956.t1|Name=Gcaud1956.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=215bp
MAVYIKAMRGVNSIDRVRLKKQVEIIRNTFLNGKFRQHDATIILATDAKV
RRLNWYYGTDRTTTDVLSFPLHDKPRRKPRVPAAFEKDVTTLLKSAPFLD
PNTGQLIDSAVVPPPLTEDLGRIFIAVAYCKQVAKERQVEHADYITLACI
HGMGHLVGFDHRTEDEYEAMRTAEETVVGAVVSEIGLLGDEKTFPRSYLC
INCLSLGISRPTAR* back to topspliced messenger RNA >Gcaud1956.t1 ID=Gcaud1956.t1|Name=Gcaud1956.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_1304_length_11589_cov_5.861106:4847..5912- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGGTCTATATCAAAGCCATGCGAGGGGTCAATTCTATTGACCGTGT
CCGTCTCAAGAAACAGGTTGAAATAATCCGCAACACCTTTCTTAACGGCA
AGTTCAGACAGCATGATGCAACGATCATACTCGCCACCGATGCGAAGGTG
CGCCGCTTAAATTGGTATTATGGGACAGATCGTACAACAACAGATGTTCT
TTCATTCCCATTACACGACAAGCCCCGACGTAAACCTCGAGTTCCCGCGG
CGTTTGAAAAAGACGTCACCACATTGTTGAAGAGTGCACCTTTTCTCGAC
CCGAATACTGGGCAACTGATTGATAGTGCTGTCGTTCCTCCACCGCTGAC
GGAAGACCTCGGACGAATCTTCATTGCAGTTGCGTACTGTAAACAGGTTG
CGAAAGAGCGTCAAGTAGAACATGCAGACTATATTACACTTGCCTGCATT
CACGGCATGGGGCATTTGGTTGGCTTCGACCATCGAACGGAAGATGAGTA
TGAAGCGATGAGAACAGCAGAAGAAACCGTTGTGGGAGCCGTTGTATCAG
AGATTGGACTTCTTGGTGACGAGAAAACGTTTCCACGATCATATCTTTGC
ATCAATTGCCTCTCGTTGGGAATATCCCGACCCACAGCGAGATAA back to topprotein sequence of Gcaud1956.t1 >Gcaud1956.t1 ID=Gcaud1956.t1|Name=Gcaud1956.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=215bp
MAVYIKAMRGVNSIDRVRLKKQVEIIRNTFLNGKFRQHDATIILATDAKV
RRLNWYYGTDRTTTDVLSFPLHDKPRRKPRVPAAFEKDVTTLLKSAPFLD
PNTGQLIDSAVVPPPLTEDLGRIFIAVAYCKQVAKERQVEHADYITLACI
HGMGHLVGFDHRTEDEYEAMRTAEETVVGAVVSEIGLLGDEKTFPRSYLC
INCLSLGISRPTAR* back to topmRNA from alignment at NODE_1304_length_11589_cov_5.861106:4847..5912- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1956.t1 ID=Gcaud1956.t1|Name=Gcaud1956.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1066bp|location=Sequence derived from alignment at NODE_1304_length_11589_cov_5.861106:4847..5912- (Gracilaria caudata M_176_S67 male)
ATGGCGGTCTATATCAAAGCCATGCGAGGGGTCAATTCTATTGACCGTGT
CCGTCTCAAGAAACAGGTAGGTCAGTTAGTCACAAGCTTTTGAAAAAAGA
CCACGCTAACAGCTATTTCTCTTCCACTACACTCGTCTTCGGCTTCCTCC
AGGTTGAAATAATCCGCAACACCTTTCTTAACGGCAAGTTCAGACAGCAT
GATGCAACGATCATACTCGCCACCGATGCGAAGGTGCGCCGCTTAAATTG
GTATTATGGGACAGATCGTACAACAACAGATGTTCTTTCATTCCCATTAC
ACGACAAGCCCCGACGTAAACCTCGAGTTCCCGCGGCGTTTGAAAAAGAC
GTCACCACATTGTTGAAGAGTGCACCTTTTCTCGACCCGAATACTGGGCA
ACTGATTGATAGTGCTGTCGTTCCTCCACCGCTGACGGAAGACCTCGGAC
GAATCTTCATTGCAGTTGCGTACTGTAAACAGGTTGCGAAAGAGCGTCAA
GTAGAACATGCAGACTATATTACACTTGCCTGCATTCACGGCATGGGGCA
TTTGGTTGGCTTCGACCATCGAACGGAAGATGAGTATGAAGCGATGAGAA
CAGCAGAAGAAACCGTTGTGGGAGCCGTTGTATCAGAGATTGGACTTCTT
GGTGACGAGAAAACGTTTCCACGATCATATCTTTGGTAAAATAAAAACCT
CGTGTGCAAAAGAAAGAGATCAGCTGATCTTGATTACGATGGTCGCGATA
TCTTTATGCCTTTCGGAAGTCCGTTGCTCTGATGAGCTCGATTCTCATGG
CGGAAGGCAACGCCGGGGGCTGGATTGACATGAACGTCTGGCAACGTTGA
GCATCAATTGCCTCTCGTTGGGAATATCCCGGTAAGCCCACAAGCCCATA
CCTTTTATTCTTGTGGCGTTTGAACACGAGGTGCGGTGTGTACTTCCATA
TATCGAAGGAAAGGGACTCCTAACGACAATCACCGCTCTCTTGCGTAAGC
CGTTACCTGGTAACCGGTTTACTATGGCTTTGCTCTGTGTATAATGATAG
ACCCACAGCGAGATAA back to topCoding sequence (CDS) from alignment at NODE_1304_length_11589_cov_5.861106:4847..5912- >Gcaud1956.t1 ID=Gcaud1956.t1|Name=Gcaud1956.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=645bp|location=Sequence derived from alignment at NODE_1304_length_11589_cov_5.861106:4847..5912- (Gracilaria caudata M_176_S67 male)
ATGGCGGTCTATATCAAAGCCATGCGAGGGGTCAATTCTATTGACCGTGT
CCGTCTCAAGAAACAGGTTGAAATAATCCGCAACACCTTTCTTAACGGCA
AGTTCAGACAGCATGATGCAACGATCATACTCGCCACCGATGCGAAGGTG
CGCCGCTTAAATTGGTATTATGGGACAGATCGTACAACAACAGATGTTCT
TTCATTCCCATTACACGACAAGCCCCGACGTAAACCTCGAGTTCCCGCGG
CGTTTGAAAAAGACGTCACCACATTGTTGAAGAGTGCACCTTTTCTCGAC
CCGAATACTGGGCAACTGATTGATAGTGCTGTCGTTCCTCCACCGCTGAC
GGAAGACCTCGGACGAATCTTCATTGCAGTTGCGTACTGTAAACAGGTTG
CGAAAGAGCGTCAAGTAGAACATGCAGACTATATTACACTTGCCTGCATT
CACGGCATGGGGCATTTGGTTGGCTTCGACCATCGAACGGAAGATGAGTA
TGAAGCGATGAGAACAGCAGAAGAAACCGTTGTGGGAGCCGTTGTATCAG
AGATTGGACTTCTTGGTGACGAGAAAACGTTTCCACGATCATATCTTTGC
ATCAATTGCCTCTCGTTGGGAATATCCCGACCCACAGCGAGATAA back to top
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